Wall clock time and date at job start Fri Apr 10 2020 18:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00374 * 2 1 4 4 H 1.09003 * 110.91276 * 26.09398 * 3 2 1 5 5 C 1.54909 * 111.00384 * 262.19913 * 3 2 1 6 6 N 1.47426 * 104.82893 * 204.91540 * 5 3 2 7 7 C 1.36941 * 125.64488 * 204.16352 * 6 5 3 8 8 H 1.07999 * 119.99582 * 161.48011 * 7 6 5 9 9 C 1.38812 * 120.00063 * 341.47349 * 7 6 5 10 10 N 1.31614 * 119.99972 * 157.63642 * 9 7 6 11 11 Si 1.86795 * 120.00268 * 337.64013 * 9 7 6 12 12 H 1.48499 * 109.47188 * 84.53165 * 11 9 7 13 13 H 1.48495 * 109.47385 * 204.53621 * 11 9 7 14 14 H 1.48501 * 109.47116 * 324.53357 * 11 9 7 15 15 C 1.47018 * 108.70739 * 24.12531 * 6 5 3 16 16 C 1.54329 * 107.27014 * 358.94180 * 15 6 5 17 17 H 1.09001 * 110.72053 * 96.34418 * 16 15 6 18 18 N 1.46495 * 110.71982 * 219.44291 * 16 15 6 19 19 C 1.34778 * 120.00188 * 273.54396 * 18 16 15 20 20 O 1.21278 * 119.99726 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00142 * 180.02562 * 19 18 16 22 22 N 1.46498 * 109.47174 * 179.97438 * 21 19 18 23 23 C 1.46500 * 120.00366 * 270.00458 * 22 21 19 24 24 C 1.34779 * 119.99749 * 90.00060 * 22 21 19 25 25 O 1.21275 * 120.00091 * 359.97438 * 24 22 21 26 26 C 1.50697 * 119.99910 * 180.02562 * 24 22 21 27 27 C 1.53005 * 117.49958 * 180.02562 * 26 24 22 28 28 C 1.52999 * 60.00033 * 107.48618 * 27 26 24 29 29 H 1.08997 * 109.46876 * 60.00244 * 1 2 3 30 30 H 1.08996 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46810 * 300.00403 * 1 2 3 32 32 H 1.09003 * 110.36807 * 86.07445 * 5 3 2 33 33 H 1.08999 * 110.36371 * 323.75156 * 5 3 2 34 34 H 0.96999 * 120.00640 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.88423 * 239.52903 * 15 6 5 36 36 H 1.08999 * 109.88308 * 118.35804 * 15 6 5 37 37 H 0.97001 * 119.99986 * 93.55269 * 18 16 15 38 38 H 1.09002 * 109.46772 * 60.00110 * 21 19 18 39 39 H 1.08995 * 109.46738 * 299.99997 * 21 19 18 40 40 H 1.09002 * 109.46807 * 269.99838 * 23 22 21 41 41 H 1.09006 * 109.46900 * 29.99430 * 23 22 21 42 42 H 1.08991 * 109.47285 * 149.99825 * 23 22 21 43 43 H 1.09002 * 115.56133 * 34.31090 * 26 24 22 44 44 H 1.09001 * 117.49697 * 359.97438 * 27 26 24 45 45 H 1.09004 * 117.49695 * 214.98291 * 27 26 24 46 46 H 1.09004 * 117.49461 * 107.48836 * 28 27 26 47 47 H 1.08991 * 117.49839 * 252.50965 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3333 2.0328 0.4479 5 6 2.4155 1.7328 -1.4328 6 7 3.4910 2.7228 -1.2413 7 6 3.8423 3.7019 -2.1319 8 1 4.4202 4.5517 -1.7999 9 6 3.4556 3.6020 -3.4614 10 7 3.3877 4.6824 -4.2099 11 14 3.0317 1.9343 -4.1881 12 1 1.6137 1.6101 -3.8891 13 1 3.2319 1.9698 -5.6590 14 1 3.9125 0.8969 -3.5936 15 6 4.1234 2.4854 0.0645 16 6 3.3825 1.3032 0.7243 17 1 3.9136 0.3680 0.5471 18 7 3.2109 1.5356 2.1605 19 6 4.1856 1.1821 3.0215 20 8 5.2050 0.6720 2.6073 21 6 4.0089 1.4206 4.4990 22 7 5.1983 0.9528 5.2149 23 6 5.2677 -0.4295 5.6954 24 6 6.2288 1.7940 5.4315 25 8 6.1716 2.9381 5.0333 26 6 7.4526 1.3126 6.1674 27 6 8.5880 2.3156 6.3821 28 6 7.7111 1.8888 7.5611 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.5686 2.1873 -1.9469 33 1 2.7853 0.8748 -1.9942 34 1 3.1179 4.6127 -5.1390 35 1 4.0316 3.3747 0.6880 36 1 5.1749 2.2335 -0.0731 37 1 2.3957 1.9438 2.4917 38 1 3.1341 0.8750 4.8530 39 1 3.8706 2.4864 4.6809 40 1 4.8621 -0.4837 6.7057 41 1 4.6862 -1.0732 5.0353 42 1 6.3063 -0.7599 5.7027 43 1 7.7262 0.2718 5.9947 44 1 8.4499 3.3235 5.9907 45 1 9.6088 1.9346 6.3502 46 1 8.1550 1.2271 8.3048 47 1 6.9960 2.6160 7.9455 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212361549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:30 Heat of formation + Delta-G solvation = -39.284880 kcal Electronic energy + Delta-G solvation = -28443.784472 eV Core-core repulsion = 24436.541879 eV Total energy + Delta-G solvation = -4007.242592 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58946 -39.59606 -38.36946 -36.52912 -36.18237 -35.52302 -34.15207 -32.02353 -30.00538 -28.84449 -27.64258 -26.79818 -26.34962 -24.46766 -23.53222 -22.70019 -21.28567 -20.89395 -20.00784 -19.17303 -17.87228 -17.59680 -17.02615 -16.74544 -16.40091 -15.92879 -15.55683 -15.05083 -14.96332 -14.72753 -14.49054 -14.28518 -14.25815 -13.70719 -13.38637 -13.21723 -13.03039 -12.93157 -12.80765 -12.49447 -12.17834 -12.09702 -11.99912 -11.81992 -11.48885 -11.29997 -11.18889 -10.88510 -10.76922 -10.69242 -10.49427 -10.13877 -10.04271 -9.99984 -9.50887 -9.40627 -8.96385 -8.83540 -8.63417 -7.09020 -5.95806 -3.27602 2.24064 2.60472 2.68719 3.27141 3.33526 3.49165 3.53981 3.60165 3.79767 4.20308 4.47092 4.53931 4.59636 4.67511 4.71005 4.84102 4.87253 4.92065 5.10143 5.14071 5.15284 5.22377 5.27122 5.30470 5.35602 5.38391 5.42854 5.49441 5.52412 5.65780 5.66395 5.80161 5.86823 5.88166 6.07493 6.30742 6.38892 6.48373 6.63886 6.78403 7.06804 7.31990 7.54149 7.66793 7.98006 8.27981 8.30755 8.80787 9.66234 10.11379 11.19913 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.003058 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.729985 B = 9154.898667 C =10337.271646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.068 3.932 4 H 0.079 0.921 5 C 0.098 3.902 6 N -0.604 5.604 7 C -0.242 4.242 8 H 0.095 0.905 9 C 0.023 3.977 10 N -0.906 5.906 11 Si 0.880 3.120 12 H -0.286 1.286 13 H -0.301 1.301 14 H -0.274 1.274 15 C 0.130 3.870 16 C 0.139 3.861 17 H 0.103 0.897 18 N -0.716 5.716 19 C 0.497 3.503 20 O -0.527 6.527 21 C 0.097 3.903 22 N -0.598 5.598 23 C 0.084 3.916 24 C 0.549 3.451 25 O -0.532 6.532 26 C -0.192 4.192 27 C -0.148 4.148 28 C -0.152 4.152 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.398 0.602 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -11.458 25.105 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C 0.009 3.991 4 H 0.097 0.903 5 C -0.028 4.028 6 N -0.333 5.333 7 C -0.369 4.369 8 H 0.113 0.887 9 C -0.175 4.175 10 N -0.550 5.550 11 Si 0.710 3.290 12 H -0.213 1.213 13 H -0.229 1.229 14 H -0.200 1.200 15 C 0.003 3.997 16 C 0.033 3.967 17 H 0.121 0.879 18 N -0.368 5.368 19 C 0.281 3.719 20 O -0.403 6.403 21 C -0.030 4.030 22 N -0.330 5.330 23 C -0.059 4.059 24 C 0.338 3.662 25 O -0.408 6.408 26 C -0.213 4.213 27 C -0.185 4.185 28 C -0.190 4.190 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.232 0.768 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.144 0.856 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.590 -11.256 24.384 26.863 hybrid contribution -0.936 -0.729 -0.626 1.341 sum -1.526 -11.984 23.758 26.653 Atomic orbital electron populations 1.22778 0.81288 1.02408 1.00074 1.87894 1.19480 1.27361 1.94952 1.23656 0.93576 0.84283 0.97577 0.90311 1.22324 0.93051 0.93501 0.93919 1.44609 1.34836 1.36037 1.17781 1.18657 1.33050 0.97232 0.87940 0.88710 1.24998 0.99667 0.96952 0.95907 1.69834 1.50069 1.26855 1.08218 0.87023 0.78188 0.86217 0.77523 1.21272 1.22853 1.19985 1.21704 0.96101 0.94329 0.87558 1.22107 0.95692 1.00462 0.78394 0.87870 1.45922 1.20364 1.63546 1.06958 1.21096 0.83623 0.78279 0.88860 1.90717 1.27653 1.42704 1.79182 1.21304 0.88820 1.03628 0.89209 1.47266 1.17067 1.12550 1.56130 1.21825 1.03488 0.81458 0.99143 1.19664 0.82951 0.84943 0.78652 1.90719 1.80127 1.18904 1.51081 1.22197 0.97002 1.00852 1.01278 1.22978 0.94752 1.00089 1.00683 1.22931 1.03202 1.03053 0.89801 0.93797 0.89864 0.94203 0.91746 0.94298 0.92627 0.94107 0.93943 0.76795 0.87430 0.86769 0.92293 0.90932 0.90626 0.85612 0.87304 0.87827 0.87806 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.85 101.05 1.10 1.47 16 2 O -0.38 -6.09 10.51 -35.23 -0.37 -6.46 16 3 C 0.07 1.18 3.15 -24.58 -0.08 1.10 16 4 H 0.08 1.19 7.69 -51.93 -0.40 0.79 16 5 C 0.10 2.19 4.43 -2.53 -0.01 2.18 16 6 N -0.60 -15.11 3.21 -170.07 -0.55 -15.66 16 7 C -0.24 -7.04 10.57 -15.06 -0.16 -7.20 16 8 H 0.10 2.93 8.06 -52.49 -0.42 2.50 16 9 C 0.02 0.70 5.43 -17.43 -0.09 0.60 16 10 N -0.91 -28.26 13.97 55.49 0.78 -27.48 16 11 Si 0.88 23.07 24.27 -169.99 -4.13 18.94 16 12 H -0.29 -7.11 6.49 56.52 0.37 -6.74 16 13 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 14 H -0.27 -7.23 6.66 56.52 0.38 -6.85 16 15 C 0.13 2.80 6.99 -3.06 -0.02 2.78 16 16 C 0.14 2.46 2.97 -66.10 -0.20 2.26 16 17 H 0.10 2.02 7.69 -51.93 -0.40 1.62 16 18 N -0.72 -9.86 5.13 -52.03 -0.27 -10.12 16 19 C 0.50 7.21 7.89 -10.98 -0.09 7.12 16 20 O -0.53 -9.95 16.16 5.56 0.09 -9.86 16 21 C 0.10 1.00 5.89 -5.19 -0.03 0.97 16 22 N -0.60 -6.44 2.36 -182.96 -0.43 -6.87 16 23 C 0.08 0.59 10.27 59.85 0.61 1.20 16 24 C 0.55 7.10 7.46 -10.99 -0.08 7.02 16 25 O -0.53 -9.01 15.84 5.56 0.09 -8.92 16 26 C -0.19 -1.80 5.29 -91.77 -0.49 -2.28 16 27 C -0.15 -1.31 10.04 -26.73 -0.27 -1.58 16 28 C -0.15 -1.08 10.23 -26.73 -0.27 -1.36 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.06 1.49 6.63 -51.93 -0.34 1.15 16 33 H 0.04 0.93 5.58 -51.93 -0.29 0.64 16 34 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.40 4.11 8.52 -40.82 -0.35 3.76 16 38 H 0.11 0.67 8.07 -51.93 -0.42 0.26 16 39 H 0.11 1.19 7.42 -51.93 -0.39 0.80 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 42 H 0.08 0.48 5.99 -51.93 -0.31 0.17 16 43 H 0.13 0.94 6.44 -51.93 -0.33 0.61 16 44 H 0.11 1.18 7.67 -51.93 -0.40 0.78 16 45 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -38.27 382.45 -6.57 -44.83 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.46 Total: 1.55 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: -0.08 Total: 14.28 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.47 Total: -60.13 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.19 Total: -25.24 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.13 Total: 18.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.27 -6.57 -44.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212361549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.549 kcal (2) G-P(sol) polarization free energy of solvation -38.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds