Wall clock time and date at job start Fri Apr 10 2020 18:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00374 * 2 1 4 4 H 1.09003 * 110.91276 * 26.09398 * 3 2 1 5 5 C 1.54909 * 111.00384 * 262.19913 * 3 2 1 6 6 N 1.47426 * 104.82893 * 204.91540 * 5 3 2 7 7 C 1.36941 * 125.64488 * 204.16352 * 6 5 3 8 8 H 1.07999 * 119.99582 * 161.48011 * 7 6 5 9 9 C 1.38812 * 120.00063 * 341.47349 * 7 6 5 10 10 N 1.31614 * 119.99972 * 157.63642 * 9 7 6 11 11 Si 1.86795 * 120.00268 * 337.64013 * 9 7 6 12 12 H 1.48499 * 109.47188 * 84.53165 * 11 9 7 13 13 H 1.48495 * 109.47385 * 204.53621 * 11 9 7 14 14 H 1.48501 * 109.47116 * 324.53357 * 11 9 7 15 15 C 1.47018 * 108.70739 * 24.12531 * 6 5 3 16 16 C 1.54329 * 107.27014 * 358.94180 * 15 6 5 17 17 H 1.09001 * 110.72053 * 96.34418 * 16 15 6 18 18 N 1.46495 * 110.71982 * 219.44291 * 16 15 6 19 19 C 1.34778 * 120.00188 * 273.54396 * 18 16 15 20 20 O 1.21278 * 119.99726 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00142 * 180.02562 * 19 18 16 22 22 N 1.46498 * 109.47174 * 179.97438 * 21 19 18 23 23 C 1.46500 * 120.00366 * 270.00458 * 22 21 19 24 24 C 1.34779 * 119.99749 * 90.00060 * 22 21 19 25 25 O 1.21275 * 120.00091 * 359.97438 * 24 22 21 26 26 C 1.50697 * 119.99910 * 180.02562 * 24 22 21 27 27 C 1.53005 * 117.49958 * 180.02562 * 26 24 22 28 28 C 1.52999 * 60.00033 * 107.48618 * 27 26 24 29 29 H 1.08997 * 109.46876 * 60.00244 * 1 2 3 30 30 H 1.08996 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46810 * 300.00403 * 1 2 3 32 32 H 1.09003 * 110.36807 * 86.07445 * 5 3 2 33 33 H 1.08999 * 110.36371 * 323.75156 * 5 3 2 34 34 H 0.96999 * 120.00640 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.88423 * 239.52903 * 15 6 5 36 36 H 1.08999 * 109.88308 * 118.35804 * 15 6 5 37 37 H 0.97001 * 119.99986 * 93.55269 * 18 16 15 38 38 H 1.09002 * 109.46772 * 60.00110 * 21 19 18 39 39 H 1.08995 * 109.46738 * 299.99997 * 21 19 18 40 40 H 1.09002 * 109.46807 * 269.99838 * 23 22 21 41 41 H 1.09006 * 109.46900 * 29.99430 * 23 22 21 42 42 H 1.08991 * 109.47285 * 149.99825 * 23 22 21 43 43 H 1.09002 * 115.56133 * 34.31090 * 26 24 22 44 44 H 1.09001 * 117.49697 * 359.97438 * 27 26 24 45 45 H 1.09004 * 117.49695 * 214.98291 * 27 26 24 46 46 H 1.09004 * 117.49461 * 107.48836 * 28 27 26 47 47 H 1.08991 * 117.49839 * 252.50965 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3333 2.0328 0.4479 5 6 2.4155 1.7328 -1.4328 6 7 3.4910 2.7228 -1.2413 7 6 3.8423 3.7019 -2.1319 8 1 4.4202 4.5517 -1.7999 9 6 3.4556 3.6020 -3.4614 10 7 3.3877 4.6824 -4.2099 11 14 3.0317 1.9343 -4.1881 12 1 1.6137 1.6101 -3.8891 13 1 3.2319 1.9698 -5.6590 14 1 3.9125 0.8969 -3.5936 15 6 4.1234 2.4854 0.0645 16 6 3.3825 1.3032 0.7243 17 1 3.9136 0.3680 0.5471 18 7 3.2109 1.5356 2.1605 19 6 4.1856 1.1821 3.0215 20 8 5.2050 0.6720 2.6073 21 6 4.0089 1.4206 4.4990 22 7 5.1983 0.9528 5.2149 23 6 5.2677 -0.4295 5.6954 24 6 6.2288 1.7940 5.4315 25 8 6.1716 2.9381 5.0333 26 6 7.4526 1.3126 6.1674 27 6 8.5880 2.3156 6.3821 28 6 7.7111 1.8888 7.5611 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.5686 2.1873 -1.9469 33 1 2.7853 0.8748 -1.9942 34 1 3.1179 4.6127 -5.1390 35 1 4.0316 3.3747 0.6880 36 1 5.1749 2.2335 -0.0731 37 1 2.3957 1.9438 2.4917 38 1 3.1341 0.8750 4.8530 39 1 3.8706 2.4864 4.6809 40 1 4.8621 -0.4837 6.7057 41 1 4.6862 -1.0732 5.0353 42 1 6.3063 -0.7599 5.7027 43 1 7.7262 0.2718 5.9947 44 1 8.4499 3.3235 5.9907 45 1 9.6088 1.9346 6.3502 46 1 8.1550 1.2271 8.3048 47 1 6.9960 2.6160 7.9455 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212361549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:30 Heat of formation + Delta-G solvation = -69.798173 kcal Electronic energy + Delta-G solvation = -28445.107627 eV Core-core repulsion = 24436.541879 eV Total energy + Delta-G solvation = -4008.565748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60581 -40.82611 -39.67775 -37.73291 -37.18607 -36.47519 -35.65912 -34.07404 -31.41015 -30.18267 -29.13140 -27.56323 -27.50977 -26.03230 -24.60545 -23.31254 -22.97453 -22.23541 -21.48413 -20.02353 -19.27710 -18.61812 -18.43812 -18.09004 -17.78299 -17.26570 -16.48274 -16.29863 -16.12645 -15.98710 -15.79546 -15.58787 -15.46144 -15.10382 -14.77990 -14.62219 -14.37133 -13.88534 -13.81253 -13.76542 -13.60272 -13.35014 -13.22557 -13.04925 -12.80122 -12.58110 -12.50692 -12.43831 -12.29588 -11.82376 -11.60049 -11.53980 -11.42017 -11.29303 -10.98386 -10.94221 -10.70127 -10.18599 -9.75054 -9.20885 -8.26338 -5.56102 1.22660 1.31792 1.34369 1.43434 1.55114 1.79375 2.19969 2.32546 2.48511 2.90453 3.00614 3.31432 3.38151 3.50947 3.69947 3.77711 3.82803 3.85744 3.97012 4.09973 4.18584 4.21615 4.29332 4.31474 4.38216 4.49755 4.55906 4.66835 4.71456 4.72667 4.74818 4.79532 4.85671 4.86158 4.87135 4.96177 5.06864 5.21930 5.31760 5.35405 5.53656 6.00562 6.13378 6.25622 6.45998 6.62200 7.07537 7.19181 7.40973 7.93782 8.93116 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.003058 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.729985 B = 9154.898667 C =10337.271646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.390 6.390 3 C 0.093 3.907 4 H 0.109 0.891 5 C 0.090 3.910 6 N -0.619 5.619 7 C -0.243 4.243 8 H 0.060 0.940 9 C -0.027 4.027 10 N -0.949 5.949 11 Si 0.943 3.057 12 H -0.261 1.261 13 H -0.301 1.301 14 H -0.280 1.280 15 C 0.129 3.871 16 C 0.155 3.845 17 H 0.085 0.915 18 N -0.701 5.701 19 C 0.493 3.507 20 O -0.576 6.576 21 C 0.101 3.899 22 N -0.598 5.598 23 C 0.077 3.923 24 C 0.535 3.465 25 O -0.588 6.588 26 C -0.203 4.203 27 C -0.165 4.165 28 C -0.124 4.124 29 H 0.038 0.962 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.041 0.959 36 H 0.015 0.985 37 H 0.419 0.581 38 H 0.160 0.840 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.148 0.852 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.138 0.862 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 -14.310 28.016 31.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.308 6.308 3 C 0.033 3.967 4 H 0.127 0.873 5 C -0.036 4.036 6 N -0.347 5.347 7 C -0.371 4.371 8 H 0.078 0.922 9 C -0.222 4.222 10 N -0.595 5.595 11 Si 0.771 3.229 12 H -0.186 1.186 13 H -0.229 1.229 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.048 3.952 17 H 0.103 0.897 18 N -0.355 5.355 19 C 0.280 3.720 20 O -0.455 6.455 21 C -0.026 4.026 22 N -0.329 5.329 23 C -0.064 4.064 24 C 0.325 3.675 25 O -0.469 6.469 26 C -0.224 4.224 27 C -0.203 4.203 28 C -0.161 4.161 29 H 0.057 0.943 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.257 0.743 38 H 0.177 0.823 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.165 0.835 44 H 0.097 0.903 45 H 0.142 0.858 46 H 0.156 0.844 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.727 -14.160 27.358 30.926 hybrid contribution -0.269 0.177 -1.482 1.517 sum -2.996 -13.982 25.876 29.564 Atomic orbital electron populations 1.23112 0.78780 1.04410 1.01242 1.87893 1.22137 1.26008 1.94772 1.23284 0.93744 0.85873 0.93779 0.87316 1.22423 0.91714 0.92014 0.97452 1.44632 1.36315 1.35741 1.17998 1.18561 1.32203 0.97337 0.89041 0.92194 1.25586 1.00455 1.00042 0.96166 1.69940 1.52090 1.28816 1.08617 0.86009 0.79169 0.81456 0.76246 1.18587 1.22926 1.20618 1.21746 0.95181 0.96150 0.86604 1.21594 0.95507 0.97492 0.80568 0.89659 1.45711 1.21357 1.63365 1.05036 1.21970 0.82594 0.76844 0.90602 1.90701 1.29564 1.44949 1.80257 1.21477 0.90566 1.04552 0.85966 1.47500 1.16580 1.13748 1.55062 1.22102 1.04356 0.79223 1.00742 1.20385 0.84184 0.84552 0.78371 1.90685 1.81332 1.21281 1.53559 1.22292 0.95600 1.01725 1.02746 1.23020 0.95987 0.98755 1.02508 1.23034 1.01569 1.02365 0.89121 0.94326 0.87575 0.91311 0.92408 0.95649 0.92470 0.94123 0.96727 0.74308 0.82303 0.86846 0.89082 0.90720 0.90046 0.83485 0.90302 0.85842 0.84430 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.85 113.37 1.23 1.63 16 2 O -0.39 -11.26 10.51 -148.98 -1.57 -12.82 16 3 C 0.09 2.99 3.15 31.99 0.10 3.09 16 4 H 0.11 2.87 7.69 -2.39 -0.02 2.85 16 5 C 0.09 3.91 4.43 86.85 0.38 4.30 16 6 N -0.62 -31.56 3.21 -691.99 -2.22 -33.78 16 7 C -0.24 -14.70 10.57 84.03 0.89 -13.81 16 8 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 9 C -0.03 -1.64 5.43 84.86 0.46 -1.18 16 10 N -0.95 -60.85 13.97 21.65 0.30 -60.54 16 11 Si 0.94 48.42 24.27 68.60 1.66 50.08 16 12 H -0.26 -12.21 6.49 99.48 0.65 -11.56 16 13 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 14 H -0.28 -14.52 6.66 99.48 0.66 -13.85 16 15 C 0.13 5.75 6.99 86.73 0.61 6.36 16 16 C 0.16 5.38 2.97 46.18 0.14 5.52 16 17 H 0.09 3.33 7.69 -2.39 -0.02 3.31 16 18 N -0.70 -17.98 5.13 -436.92 -2.24 -20.22 16 19 C 0.49 13.69 7.89 87.66 0.69 14.38 16 20 O -0.58 -21.83 16.16 -3.02 -0.05 -21.88 16 21 C 0.10 1.84 5.89 85.63 0.50 2.34 16 22 N -0.60 -11.75 2.36 -851.15 -2.01 -13.76 16 23 C 0.08 0.84 10.27 127.77 1.31 2.15 16 24 C 0.53 13.62 7.46 87.66 0.65 14.27 16 25 O -0.59 -20.66 15.84 -3.01 -0.05 -20.71 16 26 C -0.20 -3.53 5.29 -11.54 -0.06 -3.59 16 27 C -0.17 -2.88 10.04 30.60 0.31 -2.57 16 28 C -0.12 -1.48 10.23 30.60 0.31 -1.17 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 32 H 0.06 2.59 6.63 -2.39 -0.02 2.58 16 33 H 0.03 1.20 5.58 -2.39 -0.01 1.19 16 34 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 35 H 0.04 1.79 8.03 -2.39 -0.02 1.77 16 36 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.42 7.24 8.52 -92.71 -0.79 6.45 16 38 H 0.16 1.24 8.07 -2.39 -0.02 1.22 16 39 H 0.11 2.17 7.42 -2.39 -0.02 2.15 16 40 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.07 0.81 8.07 -2.38 -0.02 0.79 16 42 H 0.08 0.80 5.99 -2.39 -0.01 0.78 16 43 H 0.15 1.86 6.44 -2.39 -0.02 1.84 16 44 H 0.08 1.85 7.67 -2.39 -0.02 1.83 16 45 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -89.48 382.45 1.45 -88.03 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.09 Total: 13.90 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 7.53 Total: 31.71 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -6.17 Total: -128.31 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -1.66 Total: -55.41 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.66 Total: 50.08 kcal Total: -89.48 1.45 -88.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212361549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.229 kcal (2) G-P(sol) polarization free energy of solvation -89.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds