Wall clock time and date at job start Fri Apr 10 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00253 * 2 1 4 4 H 1.09000 * 110.91199 * 32.44713 * 3 2 1 5 5 C 1.54914 * 111.00244 * 268.55050 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.91582 * 5 3 2 7 7 C 1.36936 * 125.64583 * 204.09666 * 6 5 3 8 8 H 1.07997 * 119.99931 * 180.02562 * 7 6 5 9 9 C 1.38819 * 120.00094 * 0.03301 * 7 6 5 10 10 N 1.31618 * 119.99956 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99883 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47048 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46969 * 120.00174 * 11 9 7 14 14 H 1.48497 * 109.47276 * 240.00208 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21285 * 120.00103 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99890 * 180.02562 * 19 18 16 22 22 C 1.50697 * 109.46784 * 179.97438 * 21 19 18 23 23 O 1.21284 * 120.00454 * 359.97438 * 22 21 19 24 24 N 1.34780 * 119.99693 * 179.97438 * 22 21 19 25 25 C 1.46500 * 119.99932 * 180.02562 * 24 22 21 26 26 C 1.53005 * 109.47429 * 179.97438 * 25 24 22 27 27 C 1.52993 * 117.49801 * 243.62172 * 26 25 24 28 28 C 1.52994 * 117.50040 * 174.99810 * 26 25 24 29 29 H 1.08996 * 109.47676 * 60.00058 * 1 2 3 30 30 H 1.09010 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46799 * 299.99570 * 1 2 3 32 32 H 1.08999 * 110.37121 * 86.07316 * 5 3 2 33 33 H 1.09003 * 110.36718 * 323.75221 * 5 3 2 34 34 H 0.96998 * 120.00119 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 36 36 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 37 37 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 38 38 H 1.08998 * 109.46987 * 299.99488 * 21 19 18 39 39 H 1.09000 * 109.47441 * 59.99528 * 21 19 18 40 40 H 0.96999 * 120.00091 * 359.97438 * 24 22 21 41 41 H 1.09002 * 109.47373 * 300.00176 * 25 24 22 42 42 H 1.09000 * 109.47219 * 59.99757 * 25 24 22 43 43 H 1.09002 * 115.54451 * 29.33031 * 26 25 24 44 44 H 1.08993 * 117.50382 * 0.02562 * 27 26 25 45 45 H 1.09006 * 117.49378 * 145.01913 * 27 26 25 46 46 H 1.09002 * 117.49735 * 214.98133 * 28 26 25 47 47 H 1.08997 * 117.50108 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3836 2.0104 0.5463 5 6 2.2695 1.7978 -1.4458 6 7 3.3611 2.7806 -1.3196 7 6 3.6235 3.7988 -2.1969 8 1 4.4509 4.4686 -2.0149 9 6 2.8260 3.9701 -3.3201 10 7 1.8172 3.1541 -3.5416 11 14 3.1844 5.3586 -4.5172 12 1 4.3637 6.1274 -4.0446 13 1 3.4687 4.7929 -5.8605 14 1 2.0062 6.2587 -4.5984 15 6 4.1217 2.4861 -0.0964 16 6 3.4498 1.2752 0.5846 17 1 3.9567 0.3494 0.3123 18 7 3.4256 1.4461 2.0393 19 6 4.4823 1.0592 2.7810 20 8 5.4531 0.5690 2.2441 21 6 4.4571 1.2345 4.2776 22 6 5.7485 0.7259 4.8646 23 8 6.6048 0.2658 4.1393 24 7 5.9518 0.7822 6.1958 25 6 7.2075 0.2883 6.7665 26 6 7.1825 0.4673 8.2859 27 6 8.2131 1.4151 8.9025 28 6 8.3600 -0.0970 9.0832 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.3761 2.2730 -1.8507 33 1 2.5787 0.9667 -2.0798 34 1 1.2597 3.2740 -4.3262 35 1 5.1533 2.2431 -0.3509 36 1 4.0977 3.3473 0.5713 37 1 2.6490 1.8378 2.4688 38 1 4.3398 2.2912 4.5176 39 1 3.6220 0.6721 4.6953 40 1 5.2672 1.1505 6.7759 41 1 7.3247 -0.7685 6.5267 42 1 8.0425 0.8504 6.3485 43 1 6.1960 0.4263 8.7478 44 1 8.9086 1.9115 8.2259 45 1 7.9047 1.9981 9.7704 46 1 8.1483 -0.5089 10.0699 47 1 9.1527 -0.5955 8.5254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213697472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:33 Heat of formation + Delta-G solvation = -54.111411 kcal Electronic energy + Delta-G solvation = -27509.963942 eV Core-core repulsion = 23502.078423 eV Total energy + Delta-G solvation = -4007.885519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.30485 -39.14651 -38.10397 -37.52904 -35.85507 -34.34301 -33.87885 -31.94380 -30.80717 -28.72148 -27.38081 -26.57581 -26.09281 -24.18502 -22.84776 -21.48872 -21.37359 -20.62761 -20.13360 -19.67153 -17.48535 -17.32947 -16.89232 -16.36059 -16.16785 -15.94630 -15.36908 -15.16112 -14.80446 -14.54655 -14.34297 -14.29251 -14.21402 -13.56731 -13.41076 -13.31641 -13.12729 -12.72665 -12.23093 -12.11985 -11.98070 -11.85349 -11.77549 -11.34823 -11.27533 -11.00222 -10.96547 -10.83665 -10.75365 -10.63840 -10.15922 -10.07590 -9.86837 -9.78314 -9.33454 -9.21822 -8.98680 -8.69731 -8.62074 -6.88209 -5.68723 -3.11313 2.57061 2.71696 2.92983 3.29783 3.38977 3.44929 3.47315 3.53992 4.13713 4.19909 4.40795 4.45082 4.49758 4.55128 4.75899 4.87418 5.05696 5.10481 5.18723 5.24063 5.31723 5.42065 5.44135 5.44573 5.52521 5.63369 5.65555 5.71015 5.71764 5.73136 5.88003 5.97588 6.11615 6.22839 6.24450 6.53802 6.74596 6.95347 7.27170 7.28918 7.57398 7.72136 7.76008 7.81578 8.15727 8.27936 8.54661 9.17381 9.77691 10.40483 11.35244 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.002288 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.122683 B =12233.541223 C =13370.327257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.140 3.860 6 N -0.601 5.601 7 C -0.220 4.220 8 H 0.081 0.919 9 C -0.012 4.012 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.130 3.870 16 C 0.141 3.859 17 H 0.100 0.900 18 N -0.719 5.719 19 C 0.510 3.490 20 O -0.495 6.495 21 C -0.164 4.164 22 C 0.511 3.489 23 O -0.489 6.489 24 N -0.736 5.736 25 C 0.152 3.848 26 C -0.170 4.170 27 C -0.178 4.178 28 C -0.171 4.171 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.112 0.888 33 H 0.026 0.974 34 H 0.252 0.748 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.395 0.605 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.398 0.602 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 -4.246 25.863 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.004 4.004 4 H 0.084 0.916 5 C 0.014 3.986 6 N -0.329 5.329 7 C -0.348 4.348 8 H 0.098 0.902 9 C -0.207 4.207 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.036 3.964 17 H 0.118 0.882 18 N -0.372 5.372 19 C 0.293 3.707 20 O -0.367 6.367 21 C -0.208 4.208 22 C 0.295 3.705 23 O -0.360 6.360 24 N -0.391 5.391 25 C 0.028 3.972 26 C -0.188 4.188 27 C -0.214 4.214 28 C -0.209 4.209 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.130 0.870 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.229 0.771 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.526 -5.056 24.697 25.336 hybrid contribution -0.877 1.320 0.018 1.585 sum 1.649 -3.736 24.715 25.050 Atomic orbital electron populations 1.22692 0.81620 1.01862 1.00000 1.87848 1.19208 1.27756 1.95136 1.24068 0.92165 0.83698 1.00518 0.91615 1.22329 0.95333 0.91911 0.89052 1.44321 1.31840 1.33134 1.23578 1.19151 1.10996 1.04059 1.00567 0.90150 1.24809 0.98106 0.99399 0.98435 1.69760 1.19981 1.38687 1.28802 0.85954 0.77372 0.81060 0.80862 1.20460 1.21684 1.21754 1.21611 0.95281 0.93662 0.89126 1.22102 0.96271 1.00190 0.77862 0.88166 1.45951 1.19109 1.64446 1.07649 1.19857 0.83440 0.79311 0.88072 1.90872 1.31889 1.41187 1.72709 1.21588 0.98454 1.05155 0.95562 1.20057 0.88838 0.79697 0.81903 1.90891 1.44314 1.42091 1.58683 1.45957 1.19841 1.65939 1.07410 1.20837 0.86682 0.99936 0.89727 1.22461 0.95892 1.06314 0.94177 1.23104 1.02184 0.92884 1.03276 1.22962 0.99954 0.96569 1.01413 0.93420 0.90375 0.94850 0.87008 0.95588 0.93688 0.94810 0.95290 0.77130 0.86159 0.86257 0.76772 0.91097 0.91323 0.87183 0.88412 0.88613 0.88431 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.89 101.05 1.10 1.60 16 2 O -0.38 -6.98 10.52 -35.23 -0.37 -7.35 16 3 C 0.05 1.05 3.11 -24.44 -0.08 0.98 16 4 H 0.07 1.15 7.77 -51.93 -0.40 0.75 16 5 C 0.14 3.42 5.63 -2.53 -0.01 3.40 16 6 N -0.60 -15.65 3.39 -170.07 -0.58 -16.23 16 7 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 10 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 11 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.13 2.91 6.98 -3.07 -0.02 2.88 16 16 C 0.14 2.70 2.98 -65.96 -0.20 2.51 16 17 H 0.10 2.17 7.70 -51.93 -0.40 1.77 16 18 N -0.72 -10.59 5.13 -51.90 -0.27 -10.86 16 19 C 0.51 7.90 7.82 -10.98 -0.09 7.81 16 20 O -0.49 -10.44 13.91 -18.96 -0.26 -10.71 16 21 C -0.16 -1.57 6.19 -29.04 -0.18 -1.75 16 22 C 0.51 6.29 7.82 -10.99 -0.09 6.20 16 23 O -0.49 -8.92 14.18 -18.96 -0.27 -9.19 16 24 N -0.74 -5.99 5.56 -60.29 -0.33 -6.32 16 25 C 0.15 1.26 5.96 -4.04 -0.02 1.23 16 26 C -0.17 -0.96 5.85 -90.62 -0.53 -1.49 16 27 C -0.18 -0.94 10.18 -26.74 -0.27 -1.22 16 28 C -0.17 -0.90 10.25 -26.74 -0.27 -1.17 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 31 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.11 2.99 5.87 -51.93 -0.30 2.69 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 37 H 0.40 4.40 8.53 -40.82 -0.35 4.05 16 38 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.40 1.84 8.40 -40.82 -0.34 1.49 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16 43 H 0.11 0.48 8.04 -51.93 -0.42 0.07 16 44 H 0.10 0.56 8.03 -51.93 -0.42 0.14 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -37.44 388.97 -9.25 -46.69 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.65 Total: 2.93 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -0.91 Total: 14.23 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.62 Total: -59.57 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.90 Total: -27.24 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.44 -9.25 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213697472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.420 kcal (2) G-P(sol) polarization free energy of solvation -37.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds