Wall clock time and date at job start Fri Apr 10 2020 18:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00253 * 2 1 4 4 H 1.09000 * 110.91199 * 32.44713 * 3 2 1 5 5 C 1.54914 * 111.00244 * 268.55050 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.91582 * 5 3 2 7 7 C 1.36936 * 125.64583 * 204.09666 * 6 5 3 8 8 H 1.07997 * 119.99931 * 180.02562 * 7 6 5 9 9 C 1.38819 * 120.00094 * 0.03301 * 7 6 5 10 10 N 1.31618 * 119.99956 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99883 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47048 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46969 * 120.00174 * 11 9 7 14 14 H 1.48497 * 109.47276 * 240.00208 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21285 * 120.00103 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99890 * 180.02562 * 19 18 16 22 22 C 1.50697 * 109.46784 * 179.97438 * 21 19 18 23 23 O 1.21284 * 120.00454 * 359.97438 * 22 21 19 24 24 N 1.34780 * 119.99693 * 179.97438 * 22 21 19 25 25 C 1.46500 * 119.99932 * 180.02562 * 24 22 21 26 26 C 1.53005 * 109.47429 * 179.97438 * 25 24 22 27 27 C 1.52993 * 117.49801 * 243.62172 * 26 25 24 28 28 C 1.52994 * 117.50040 * 174.99810 * 26 25 24 29 29 H 1.08996 * 109.47676 * 60.00058 * 1 2 3 30 30 H 1.09010 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46799 * 299.99570 * 1 2 3 32 32 H 1.08999 * 110.37121 * 86.07316 * 5 3 2 33 33 H 1.09003 * 110.36718 * 323.75221 * 5 3 2 34 34 H 0.96998 * 120.00119 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 36 36 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 37 37 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 38 38 H 1.08998 * 109.46987 * 299.99488 * 21 19 18 39 39 H 1.09000 * 109.47441 * 59.99528 * 21 19 18 40 40 H 0.96999 * 120.00091 * 359.97438 * 24 22 21 41 41 H 1.09002 * 109.47373 * 300.00176 * 25 24 22 42 42 H 1.09000 * 109.47219 * 59.99757 * 25 24 22 43 43 H 1.09002 * 115.54451 * 29.33031 * 26 25 24 44 44 H 1.08993 * 117.50382 * 0.02562 * 27 26 25 45 45 H 1.09006 * 117.49378 * 145.01913 * 27 26 25 46 46 H 1.09002 * 117.49735 * 214.98133 * 28 26 25 47 47 H 1.08997 * 117.50108 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3836 2.0104 0.5463 5 6 2.2695 1.7978 -1.4458 6 7 3.3611 2.7806 -1.3196 7 6 3.6235 3.7988 -2.1969 8 1 4.4509 4.4686 -2.0149 9 6 2.8260 3.9701 -3.3201 10 7 1.8172 3.1541 -3.5416 11 14 3.1844 5.3586 -4.5172 12 1 4.3637 6.1274 -4.0446 13 1 3.4687 4.7929 -5.8605 14 1 2.0062 6.2587 -4.5984 15 6 4.1217 2.4861 -0.0964 16 6 3.4498 1.2752 0.5846 17 1 3.9567 0.3494 0.3123 18 7 3.4256 1.4461 2.0393 19 6 4.4823 1.0592 2.7810 20 8 5.4531 0.5690 2.2441 21 6 4.4571 1.2345 4.2776 22 6 5.7485 0.7259 4.8646 23 8 6.6048 0.2658 4.1393 24 7 5.9518 0.7822 6.1958 25 6 7.2075 0.2883 6.7665 26 6 7.1825 0.4673 8.2859 27 6 8.2131 1.4151 8.9025 28 6 8.3600 -0.0970 9.0832 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.3761 2.2730 -1.8507 33 1 2.5787 0.9667 -2.0798 34 1 1.2597 3.2740 -4.3262 35 1 5.1533 2.2431 -0.3509 36 1 4.0977 3.3473 0.5713 37 1 2.6490 1.8378 2.4688 38 1 4.3398 2.2912 4.5176 39 1 3.6220 0.6721 4.6953 40 1 5.2672 1.1505 6.7759 41 1 7.3247 -0.7685 6.5267 42 1 8.0425 0.8504 6.3485 43 1 6.1960 0.4263 8.7478 44 1 8.9086 1.9115 8.2259 45 1 7.9047 1.9981 9.7704 46 1 8.1483 -0.5089 10.0699 47 1 9.1527 -0.5955 8.5254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213697472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:32 Heat of formation + Delta-G solvation = -82.945008 kcal Electronic energy + Delta-G solvation = -27511.214260 eV Core-core repulsion = 23502.078423 eV Total energy + Delta-G solvation = -4009.135838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.42566 -40.40387 -39.32498 -38.29551 -37.48433 -35.59108 -35.07222 -33.73981 -31.94084 -30.41542 -28.83389 -27.67596 -27.46167 -25.97021 -23.25122 -22.81163 -22.28956 -21.97261 -21.51506 -20.89299 -19.16643 -18.41779 -18.01928 -17.74028 -17.24522 -17.00487 -16.82180 -16.43031 -15.97072 -15.77509 -15.60692 -15.56111 -15.12922 -14.94143 -14.76777 -14.44967 -14.28684 -14.14101 -13.90754 -13.69638 -13.19169 -13.05177 -12.78687 -12.74555 -12.56522 -12.38746 -12.34973 -12.31303 -12.01639 -11.91554 -11.52986 -11.45604 -11.16158 -11.09975 -10.82022 -10.62709 -10.40410 -10.06497 -10.01554 -8.98111 -7.81911 -5.29163 1.46047 1.48024 1.58290 1.65985 1.76920 1.80557 2.41706 2.46844 2.76182 2.89831 3.28718 3.52206 3.61260 3.72417 3.79039 3.98152 3.99886 4.02694 4.09365 4.16338 4.28234 4.37118 4.43913 4.46588 4.50924 4.63486 4.68964 4.69571 4.74385 4.82065 4.85341 4.91222 4.97524 5.04589 5.21493 5.26804 5.29598 5.43774 5.50094 5.52079 5.67782 6.18669 6.32749 6.59048 6.65568 7.03994 7.31571 7.44875 7.68221 8.30904 9.19690 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018574 B = 0.002288 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.122683 B =12233.541223 C =13370.327257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.080 3.920 4 H 0.096 0.904 5 C 0.143 3.857 6 N -0.619 5.619 7 C -0.242 4.242 8 H 0.081 0.919 9 C -0.063 4.063 10 N -0.947 5.947 11 Si 0.985 3.015 12 H -0.269 1.269 13 H -0.294 1.294 14 H -0.284 1.284 15 C 0.132 3.868 16 C 0.156 3.844 17 H 0.069 0.931 18 N -0.701 5.701 19 C 0.503 3.497 20 O -0.558 6.558 21 C -0.147 4.147 22 C 0.504 3.496 23 O -0.560 6.560 24 N -0.713 5.713 25 C 0.150 3.850 26 C -0.165 4.165 27 C -0.177 4.177 28 C -0.174 4.174 29 H 0.033 0.967 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.090 0.910 33 H -0.016 1.016 34 H 0.250 0.750 35 H 0.007 0.993 36 H 0.045 0.955 37 H 0.419 0.581 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.420 0.580 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.132 0.868 44 H 0.088 0.912 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 -3.046 29.219 29.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.021 3.979 4 H 0.113 0.887 5 C 0.017 3.983 6 N -0.347 5.347 7 C -0.371 4.371 8 H 0.099 0.901 9 C -0.256 4.256 10 N -0.596 5.596 11 Si 0.813 3.187 12 H -0.193 1.193 13 H -0.221 1.221 14 H -0.210 1.210 15 C 0.005 3.995 16 C 0.050 3.950 17 H 0.088 0.912 18 N -0.356 5.356 19 C 0.289 3.711 20 O -0.434 6.434 21 C -0.189 4.189 22 C 0.289 3.711 23 O -0.437 6.437 24 N -0.368 5.368 25 C 0.026 3.974 26 C -0.184 4.184 27 C -0.214 4.214 28 C -0.212 4.212 29 H 0.051 0.949 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.002 0.998 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.257 0.743 38 H 0.184 0.816 39 H 0.186 0.814 40 H 0.259 0.741 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.150 0.850 44 H 0.106 0.894 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.514 -3.827 28.161 28.425 hybrid contribution -0.251 0.890 -1.012 1.371 sum 0.263 -2.937 27.149 27.309 Atomic orbital electron populations 1.22976 0.79230 1.03849 1.00826 1.87843 1.21805 1.26866 1.95002 1.23636 0.92659 0.84826 0.96826 0.88663 1.22117 0.93792 0.90155 0.92202 1.44579 1.32804 1.32880 1.24408 1.19480 1.11241 1.04754 1.01580 0.90122 1.25669 0.98046 1.01847 1.00036 1.69993 1.20582 1.40021 1.29023 0.84921 0.77618 0.78194 0.78011 1.19308 1.22125 1.21015 1.21669 0.93860 0.95518 0.88454 1.21530 0.95549 0.97278 0.80672 0.91236 1.45688 1.20203 1.64292 1.05393 1.20929 0.82087 0.77509 0.90550 1.90869 1.34289 1.43850 1.74410 1.21623 0.98382 1.08571 0.90302 1.20634 0.89076 0.78743 0.82624 1.90883 1.46753 1.45510 1.60554 1.45755 1.20151 1.64415 1.06462 1.20795 0.86239 0.98630 0.91723 1.22401 0.97133 1.06774 0.92064 1.23155 1.01768 0.93014 1.03500 1.23051 0.99553 0.96646 1.01919 0.94860 0.87950 0.91659 0.89242 0.99773 0.94003 0.97538 0.93730 0.74325 0.81647 0.81364 0.74149 0.92749 0.93287 0.84981 0.89389 0.87097 0.86955 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.89 113.37 1.23 1.94 16 2 O -0.40 -14.11 10.52 -148.98 -1.57 -15.67 16 3 C 0.08 3.03 3.11 32.08 0.10 3.13 16 4 H 0.10 3.06 7.77 -2.39 -0.02 3.04 16 5 C 0.14 7.27 5.63 86.86 0.49 7.76 16 6 N -0.62 -33.21 3.39 -691.97 -2.35 -35.56 16 7 C -0.24 -13.90 10.27 84.04 0.86 -13.03 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 10 N -0.95 -56.17 10.09 21.65 0.22 -55.95 16 11 Si 0.98 45.92 29.55 68.60 2.03 47.94 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 C 0.13 6.01 6.98 86.73 0.61 6.62 16 16 C 0.16 6.04 2.98 46.27 0.14 6.17 16 17 H 0.07 3.15 7.70 -2.39 -0.02 3.13 16 18 N -0.70 -19.12 5.13 -436.51 -2.24 -21.36 16 19 C 0.50 14.82 7.82 87.66 0.69 15.51 16 20 O -0.56 -24.29 13.91 20.40 0.28 -24.00 16 21 C -0.15 -2.23 6.19 29.10 0.18 -2.05 16 22 C 0.50 11.61 7.82 87.66 0.69 12.30 16 23 O -0.56 -21.11 14.18 20.40 0.29 -20.82 16 24 N -0.71 -9.92 5.56 -463.04 -2.57 -12.49 16 25 C 0.15 2.40 5.96 86.38 0.51 2.91 16 26 C -0.17 -1.51 5.85 -10.80 -0.06 -1.57 16 27 C -0.18 -1.57 10.18 30.59 0.31 -1.26 16 28 C -0.17 -1.56 10.25 30.59 0.31 -1.24 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 32 H 0.09 4.95 5.87 -2.39 -0.01 4.93 16 33 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 34 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.04 1.89 8.03 -2.39 -0.02 1.87 16 37 H 0.42 7.48 8.53 -92.71 -0.79 6.69 16 38 H 0.17 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.42 2.09 8.40 -92.71 -0.78 1.32 16 41 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 0.98 7.87 -2.39 -0.02 0.96 16 43 H 0.13 0.65 8.04 -2.39 -0.02 0.63 16 44 H 0.09 0.95 8.03 -2.39 -0.02 0.93 16 45 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.11 0.68 8.14 -2.39 -0.02 0.67 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -89.80 388.97 0.03 -89.77 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -0.58 Total: 14.11 kcal Atomic # 6 Polarization: 27.52 SS G_CDS: 6.52 Total: 34.04 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -6.94 Total: -125.37 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -0.99 Total: -60.50 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -89.80 0.03 -89.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213697472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.826 kcal (2) G-P(sol) polarization free energy of solvation -89.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds