Wall clock time and date at job start Fri Apr 10 2020 18:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00008 * 2 1 4 4 H 1.08999 * 110.64332 * 26.86646 * 3 2 1 5 5 C 1.54321 * 110.87525 * 263.61253 * 3 2 1 6 6 N 1.47023 * 107.27114 * 219.37514 * 5 3 2 7 7 C 1.36938 * 125.64619 * 178.98569 * 6 5 3 8 8 H 1.08002 * 119.99827 * 179.97438 * 7 6 5 9 9 C 1.38816 * 120.00010 * 359.97438 * 7 6 5 10 10 N 1.31617 * 120.00238 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99817 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47567 * 59.99583 * 11 9 7 13 13 H 1.48497 * 109.46929 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46813 * 299.99407 * 11 9 7 15 15 C 1.47425 * 108.70550 * 358.93865 * 6 5 3 16 16 C 1.54913 * 104.82854 * 24.13001 * 15 6 5 17 17 H 1.09006 * 111.03768 * 81.08161 * 16 15 6 18 18 N 1.46500 * 111.00064 * 204.91331 * 16 15 6 19 19 C 1.34775 * 120.00237 * 267.19699 * 18 16 15 20 20 O 1.21282 * 119.99931 * 359.97438 * 19 18 16 21 21 C 1.50702 * 120.00166 * 180.02562 * 19 18 16 22 22 C 1.52994 * 109.47050 * 180.02562 * 21 19 18 23 23 N 1.46509 * 109.46826 * 180.02562 * 22 21 19 24 24 C 1.46755 * 124.35265 * 89.99758 * 23 22 21 25 25 C 1.54476 * 105.47483 * 162.98124 * 24 23 22 26 26 C 1.54627 * 101.76424 * 25.41616 * 25 24 23 27 27 C 1.34424 * 124.34231 * 269.99263 * 23 22 21 28 28 O 1.21276 * 124.94682 * 0.45878 * 27 23 22 29 29 H 1.09001 * 109.47110 * 299.99382 * 1 2 3 30 30 H 1.08998 * 109.47497 * 59.99293 * 1 2 3 31 31 H 1.09001 * 109.47472 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.88017 * 338.79083 * 5 3 2 33 33 H 1.08999 * 109.88013 * 99.95750 * 5 3 2 34 34 H 0.96993 * 120.00531 * 180.02562 * 10 9 7 35 35 H 1.09000 * 110.36706 * 265.29382 * 15 6 5 36 36 H 1.08993 * 110.36229 * 142.96703 * 15 6 5 37 37 H 0.97001 * 119.99532 * 87.20114 * 18 16 15 38 38 H 1.08992 * 109.47126 * 59.99468 * 21 19 18 39 39 H 1.09006 * 109.46505 * 299.99794 * 21 19 18 40 40 H 1.08998 * 109.47488 * 59.99951 * 22 21 19 41 41 H 1.09006 * 109.47127 * 299.99203 * 22 21 19 42 42 H 1.08999 * 110.24678 * 43.98589 * 24 23 22 43 43 H 1.09003 * 110.24487 * 281.97930 * 24 23 22 44 44 H 1.09005 * 110.97268 * 267.29735 * 25 24 23 45 45 H 1.08997 * 110.97040 * 143.53479 * 25 24 23 46 46 H 1.09001 * 110.48777 * 93.88219 * 26 25 24 47 47 H 1.09000 * 110.48903 * 216.52672 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3353 2.0266 0.4610 5 6 2.3804 1.7425 -1.4330 6 7 3.6669 2.4500 -1.3549 7 6 4.3515 2.9806 -2.4155 8 1 5.2931 3.4841 -2.2530 9 6 3.8354 2.8712 -3.6995 10 7 2.6882 2.2571 -3.8976 11 14 4.7698 3.5944 -5.1464 12 1 6.1068 2.9554 -5.2416 13 1 4.0123 3.3451 -6.3991 14 1 4.9331 5.0571 -4.9489 15 6 4.0971 2.4946 0.0545 16 6 3.3817 1.2957 0.7256 17 1 3.9169 0.3650 0.5369 18 7 3.2166 1.5208 2.1637 19 6 4.1467 1.0685 3.0278 20 8 5.1202 0.4747 2.6149 21 6 3.9766 1.2996 4.5073 22 6 5.1629 0.6917 5.2581 23 7 4.9971 0.9158 6.6965 24 6 4.3056 -0.0070 7.6041 25 6 4.7505 0.4023 9.0257 26 6 5.1183 1.8907 8.8246 27 6 5.4591 1.9933 7.3542 28 8 6.0606 2.9141 6.8432 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 2.4775 0.8665 -2.0743 33 1 1.6137 2.4098 -1.8267 34 1 2.3278 2.1803 -4.7948 35 1 3.7841 3.4306 0.5172 36 1 5.1786 2.3787 0.1247 37 1 2.4377 1.9954 2.4940 38 1 3.0530 0.8294 4.8446 39 1 3.9322 2.3707 4.7049 40 1 6.0863 1.1623 4.9207 41 1 5.2076 -0.3794 5.0606 42 1 4.6041 -1.0346 7.3967 43 1 3.2258 0.1010 7.5011 44 1 5.6190 -0.1746 9.3439 45 1 3.9314 0.2955 9.7367 46 1 4.2684 2.5295 9.0648 47 1 5.9811 2.1563 9.4355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213869709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:37 Heat of formation + Delta-G solvation = -110.581731 kcal Electronic energy + Delta-G solvation = -27893.545164 eV Core-core repulsion = 23883.210908 eV Total energy + Delta-G solvation = -4010.334256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48201 -40.96706 -39.65704 -37.55534 -37.45718 -35.65191 -34.78069 -33.70019 -31.26199 -30.36374 -28.82199 -28.41906 -27.52786 -26.31190 -25.08947 -22.71045 -22.35489 -22.07754 -21.40127 -20.31657 -19.18685 -18.47095 -17.89286 -17.49336 -17.34676 -17.05777 -16.80559 -16.46352 -16.12190 -15.83130 -15.76394 -15.21397 -15.06425 -14.71633 -14.62220 -14.55138 -14.21701 -14.01483 -13.97308 -13.63301 -13.24717 -13.20222 -13.14949 -13.00914 -12.74774 -12.58901 -12.36160 -12.32197 -12.13524 -12.11369 -11.88849 -11.80433 -11.65964 -11.09520 -10.84280 -10.79054 -10.60650 -10.11223 -9.75871 -8.99647 -7.89807 -5.28251 1.43631 1.47754 1.53448 1.54308 1.58000 1.79943 2.27307 2.45379 2.76236 3.29195 3.46425 3.51061 3.65945 3.69039 3.80816 3.90379 3.95806 4.01573 4.10197 4.13725 4.27764 4.35212 4.43979 4.47871 4.59309 4.65166 4.67685 4.73951 4.76451 4.79177 4.87842 4.89231 4.95097 4.98468 5.14880 5.27697 5.31419 5.35007 5.43971 5.55218 5.63358 6.11207 6.16193 6.30553 6.50080 7.02417 7.13640 7.22197 7.67068 8.29534 9.19429 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018777 B = 0.002490 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.799086 B =11243.467113 C =12369.629113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.078 3.922 4 H 0.098 0.902 5 C 0.174 3.826 6 N -0.622 5.622 7 C -0.250 4.250 8 H 0.081 0.919 9 C -0.062 4.062 10 N -0.948 5.948 11 Si 0.982 3.018 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.274 1.274 15 C 0.129 3.871 16 C 0.150 3.850 17 H 0.076 0.924 18 N -0.701 5.701 19 C 0.516 3.484 20 O -0.584 6.584 21 C -0.138 4.138 22 C 0.142 3.858 23 N -0.618 5.618 24 C 0.091 3.909 25 C -0.120 4.120 26 C -0.149 4.149 27 C 0.497 3.503 28 O -0.592 6.592 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.101 0.899 32 H 0.017 0.983 33 H 0.023 0.977 34 H 0.250 0.750 35 H 0.041 0.959 36 H 0.032 0.968 37 H 0.417 0.583 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 -5.848 29.212 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C 0.019 3.981 4 H 0.115 0.885 5 C 0.048 3.952 6 N -0.350 5.350 7 C -0.379 4.379 8 H 0.099 0.901 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.810 3.190 12 H -0.206 1.206 13 H -0.216 1.216 14 H -0.200 1.200 15 C 0.003 3.997 16 C 0.043 3.957 17 H 0.094 0.906 18 N -0.353 5.353 19 C 0.304 3.696 20 O -0.464 6.464 21 C -0.178 4.178 22 C 0.019 3.981 23 N -0.350 5.350 24 C -0.030 4.030 25 C -0.157 4.157 26 C -0.189 4.189 27 C 0.287 3.713 28 O -0.472 6.472 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.254 0.746 38 H 0.152 0.848 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.398 -5.995 28.388 29.512 hybrid contribution 0.155 0.865 -1.600 1.825 sum -5.243 -5.130 26.788 27.774 Atomic orbital electron populations 1.23001 0.79249 1.03949 1.00790 1.87893 1.21826 1.26885 1.94912 1.23475 0.93606 0.85318 0.95744 0.88474 1.21298 0.87085 0.94646 0.92124 1.44522 1.22202 1.66264 1.02014 1.19404 1.02819 1.29631 0.86006 0.90131 1.25687 0.98467 1.01372 0.99960 1.70146 1.20560 1.48149 1.20806 0.85105 0.77501 0.78331 0.78098 1.20593 1.21583 1.19966 1.21938 0.97180 0.95869 0.84757 1.21816 0.95629 0.98234 0.80043 0.90561 1.45705 1.25917 1.58609 1.05049 1.21129 0.81658 0.77233 0.89622 1.90725 1.31624 1.43322 1.80734 1.21926 1.02620 1.04613 0.88690 1.20934 0.96960 1.01950 0.78294 1.48510 1.55991 1.22741 1.07802 1.22490 0.98085 0.93802 0.88656 1.22653 1.04093 0.92991 0.96009 1.22385 1.05235 1.00552 0.90678 1.21927 0.76936 0.80801 0.91674 1.90722 1.43658 1.37238 1.75622 0.91544 0.94751 0.88051 0.96448 0.95924 0.94107 0.94149 0.94956 0.74552 0.84785 0.88166 0.92732 0.88584 0.89017 0.88689 0.89525 0.86049 0.86031 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.85 113.37 1.23 1.89 16 2 O -0.40 -14.09 10.44 -148.98 -1.56 -15.64 16 3 C 0.08 2.89 3.09 31.78 0.10 2.99 16 4 H 0.10 2.94 7.68 -2.39 -0.02 2.92 16 5 C 0.17 8.82 5.15 86.73 0.45 9.27 16 6 N -0.62 -33.58 3.39 -691.98 -2.35 -35.93 16 7 C -0.25 -14.65 10.28 84.03 0.86 -13.79 16 8 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 9 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 10 N -0.95 -57.89 10.31 21.65 0.22 -57.66 16 11 Si 0.98 47.02 29.55 68.60 2.03 49.04 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 15 C 0.13 5.74 6.93 86.86 0.60 6.34 16 16 C 0.15 5.65 3.15 46.39 0.15 5.80 16 17 H 0.08 3.40 7.54 -2.38 -0.02 3.39 16 18 N -0.70 -19.07 5.20 -435.95 -2.27 -21.33 16 19 C 0.52 14.55 7.83 87.66 0.69 15.23 16 20 O -0.58 -22.32 15.62 -3.04 -0.05 -22.37 16 21 C -0.14 -2.53 6.02 29.85 0.18 -2.35 16 22 C 0.14 2.94 5.22 86.38 0.45 3.39 16 23 N -0.62 -9.86 2.93 -817.99 -2.40 -12.25 16 24 C 0.09 0.55 7.35 86.83 0.64 1.19 16 25 C -0.12 -0.35 7.18 31.65 0.23 -0.12 16 26 C -0.15 -1.35 6.86 30.59 0.21 -1.14 16 27 C 0.50 10.16 8.02 87.90 0.71 10.86 16 28 O -0.59 -18.99 17.60 -3.02 -0.05 -19.04 16 29 H 0.07 1.26 8.11 -2.39 -0.02 1.24 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.02 1.02 7.30 -2.38 -0.02 1.00 16 33 H 0.02 1.24 7.51 -2.39 -0.02 1.22 16 34 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.42 7.97 8.57 -92.71 -0.79 7.18 16 38 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.05 1.55 7.89 -2.39 -0.02 1.53 16 41 H 0.10 1.83 8.10 -2.38 -0.02 1.81 16 42 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 45 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -86.47 386.31 0.70 -85.76 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.17 Total: 13.00 kcal Atomic # 6 Polarization: 29.48 SS G_CDS: 6.95 Total: 36.42 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -6.79 Total: -127.18 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -1.66 Total: -57.05 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -86.47 0.70 -85.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213869709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.817 kcal (2) G-P(sol) polarization free energy of solvation -86.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds