Wall clock time and date at job start Fri Apr 10 2020 18:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46859 * 2 1 4 4 C 1.52998 * 109.47371 * 59.99533 * 3 2 1 5 5 C 1.53007 * 109.46775 * 300.00027 * 3 2 1 6 6 C 1.50696 * 109.47119 * 180.02562 * 3 2 1 7 7 O 1.21278 * 120.00098 * 359.97438 * 6 3 2 8 8 N 1.34776 * 119.99810 * 180.02562 * 6 3 2 9 9 C 1.46506 * 119.99826 * 179.97438 * 8 6 3 10 10 C 1.53119 * 109.51978 * 204.99618 * 9 8 6 11 11 C 1.53039 * 109.27478 * 182.37658 * 10 9 8 12 12 N 1.46852 * 109.52336 * 59.18093 * 11 10 9 13 13 C 1.46900 * 111.00118 * 174.15791 * 12 11 10 14 14 C 1.50697 * 109.47237 * 293.61170 * 13 12 11 15 15 O 1.21294 * 119.99957 * 353.73088 * 14 13 12 16 16 N 1.34777 * 120.00218 * 173.72893 * 14 13 12 17 17 C 1.37099 * 120.00043 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99929 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99738 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00132 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99888 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47281 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47325 * 120.00225 * 21 19 17 24 24 H 1.48503 * 109.47321 * 240.00026 * 21 19 17 25 25 C 1.46845 * 111.19897 * 298.25829 * 12 11 10 26 26 C 1.53038 * 109.52423 * 61.74130 * 25 12 11 27 27 H 1.09000 * 109.47132 * 60.00508 * 1 2 3 28 28 H 1.08999 * 109.46382 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46948 * 299.99952 * 1 2 3 30 30 H 1.09001 * 109.47271 * 240.00218 * 2 1 3 31 31 H 1.09000 * 109.47132 * 119.99492 * 2 1 3 32 32 H 1.08997 * 109.46964 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47455 * 300.00596 * 4 3 2 34 34 H 1.09000 * 109.47026 * 60.00260 * 4 3 2 35 35 H 1.09000 * 109.46853 * 299.99802 * 5 3 2 36 36 H 1.08994 * 109.47312 * 59.99873 * 5 3 2 37 37 H 1.08997 * 109.46920 * 180.02562 * 5 3 2 38 38 H 0.97000 * 120.00090 * 359.97438 * 8 6 3 39 39 H 1.08994 * 109.52080 * 325.12579 * 9 8 6 40 40 H 1.08998 * 109.50519 * 62.44346 * 10 9 8 41 41 H 1.08998 * 109.50523 * 302.31571 * 10 9 8 42 42 H 1.08994 * 109.46299 * 299.16822 * 11 10 9 43 43 H 1.09003 * 109.45395 * 179.18930 * 11 10 9 44 44 H 1.08996 * 109.46919 * 173.61386 * 13 12 11 45 45 H 1.08994 * 109.47139 * 53.61230 * 13 12 11 46 46 H 0.97002 * 119.99804 * 0.02562 * 16 14 13 47 47 H 0.96995 * 120.00108 * 179.97438 * 20 19 17 48 48 H 1.08998 * 109.46555 * 181.75400 * 25 12 11 49 49 H 1.09004 * 109.46392 * 301.72721 * 25 12 11 50 50 H 1.08998 * 109.50374 * 180.88473 * 26 25 12 51 51 H 1.09001 * 109.50604 * 60.76106 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5299 2.1639 1.2491 5 6 1.5299 2.1638 -1.2493 6 6 3.5469 1.4426 -0.0006 7 8 4.1534 0.3924 -0.0006 8 7 4.2207 2.6099 -0.0002 9 6 5.6858 2.6100 -0.0003 10 6 6.1974 3.9178 0.6100 11 6 7.7266 3.9376 0.5531 12 7 8.1672 3.8227 -0.8430 13 6 9.6242 3.9772 -0.9496 14 6 10.0089 5.3852 -0.5746 15 8 9.1480 6.2126 -0.3609 16 7 11.3094 5.7251 -0.4766 17 6 11.6593 7.0062 -0.1360 18 1 10.8928 7.7428 0.0542 19 6 13.0001 7.3567 -0.0355 20 7 13.9328 6.4604 -0.2675 21 14 13.4769 9.1019 0.4293 22 1 12.2496 9.9117 0.6374 23 1 14.2735 9.0804 1.6825 24 1 14.2869 9.7011 -0.6617 25 6 7.7279 2.5531 -1.4358 26 6 6.1987 2.4919 -1.4382 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8936 3.1914 1.2493 33 1 0.4399 2.1638 1.2492 34 1 1.8932 1.6501 2.1392 35 1 1.8933 1.6499 -2.1393 36 1 0.4399 2.1637 -1.2493 37 1 1.8935 3.1913 -1.2496 38 1 3.7357 3.4499 0.0001 39 1 6.0501 1.7670 0.5868 40 1 5.8710 3.9873 1.6477 41 1 5.8012 4.7621 0.0459 42 1 8.1223 3.1010 1.1288 43 1 8.0934 4.8739 0.9738 44 1 9.9369 3.7758 -1.9742 45 1 10.1143 3.2749 -0.2755 46 1 11.9978 5.0635 -0.6479 47 1 14.8687 6.7052 -0.1977 48 1 8.0957 2.4837 -2.4595 49 1 8.1236 1.7229 -0.8507 50 1 5.8732 1.5428 -1.8639 51 1 5.8025 3.3138 -2.0345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228935037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:03 Heat of formation + Delta-G solvation = -112.969964 kcal Electronic energy + Delta-G solvation = -28268.179016 eV Core-core repulsion = 24393.574293 eV Total energy + Delta-G solvation = -3874.604723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50715 -40.53484 -39.20758 -37.31518 -36.22962 -35.73022 -33.32495 -32.81917 -31.85448 -30.85710 -28.61625 -28.25896 -26.47389 -25.73655 -24.37515 -23.99400 -22.25542 -21.17832 -20.98327 -19.88039 -19.75632 -17.95173 -17.72285 -17.43626 -16.74180 -16.51568 -16.30399 -16.19259 -15.73635 -15.49411 -15.36023 -15.28147 -14.96656 -14.83197 -14.52747 -14.21533 -13.89399 -13.58441 -13.51508 -13.49663 -13.21283 -13.00081 -12.94366 -12.77503 -12.71685 -12.47104 -12.42581 -12.35357 -12.20400 -12.13506 -12.10563 -11.83301 -11.65714 -11.53292 -11.51396 -11.38674 -10.63250 -10.26336 -10.05943 -9.98044 -9.22222 -8.45326 -5.93710 1.37146 1.42259 1.56394 1.65248 2.07136 2.15714 2.28945 2.74021 3.21683 3.38615 3.58471 3.70064 3.80072 3.83801 3.92589 4.05519 4.17345 4.23291 4.28618 4.35491 4.44998 4.46058 4.50833 4.55018 4.56896 4.62668 4.69595 4.71132 4.77730 4.88243 4.92070 4.94609 4.95980 5.04104 5.10094 5.10827 5.13236 5.14276 5.24220 5.29762 5.42531 5.43034 5.49807 5.56156 5.88756 6.08634 6.20438 6.57344 6.62246 7.14630 7.26381 7.58504 8.13986 8.72410 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.036235 B = 0.002020 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.537499 B =13856.122404 C =14234.170442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.078 4.078 4 C -0.141 4.141 5 C -0.141 4.141 6 C 0.518 3.482 7 O -0.585 6.585 8 N -0.711 5.711 9 C 0.151 3.849 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.529 5.529 13 C 0.056 3.944 14 C 0.443 3.557 15 O -0.611 6.611 16 N -0.576 5.576 17 C -0.329 4.329 18 H 0.080 0.920 19 C -0.015 4.015 20 N -0.922 5.922 21 Si 0.993 3.007 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.272 1.272 25 C 0.059 3.941 26 C -0.113 4.113 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.412 0.588 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.065 0.935 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.089 0.911 49 H 0.036 0.964 50 H 0.067 0.933 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.635 -11.263 -0.165 27.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C -0.081 4.081 4 C -0.198 4.198 5 C -0.198 4.198 6 C 0.306 3.694 7 O -0.465 6.465 8 N -0.362 5.362 9 C 0.046 3.954 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.254 5.254 13 C -0.075 4.075 14 C 0.231 3.769 15 O -0.496 6.496 16 N -0.214 5.214 17 C -0.459 4.459 18 H 0.098 0.902 19 C -0.215 4.215 20 N -0.563 5.563 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.069 4.069 26 C -0.152 4.152 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.249 0.751 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.107 0.893 49 H 0.055 0.945 50 H 0.086 0.914 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.797 -11.059 -0.276 27.153 hybrid contribution 1.510 0.058 0.553 1.609 sum -23.288 -11.000 0.278 25.757 Atomic orbital electron populations 1.21892 0.93401 1.02370 1.03063 1.21327 0.97141 0.93665 1.01638 1.20852 0.88914 0.98720 0.99593 1.21943 1.03250 1.00122 0.94523 1.21939 1.03221 1.00096 0.94535 1.21232 0.91096 0.83026 0.74048 1.90669 1.71436 1.32935 1.51453 1.46007 1.06495 1.09164 1.74536 1.20868 0.80008 0.98030 0.96505 1.21695 0.94127 0.96842 1.01760 1.22026 0.95905 1.00675 0.88287 1.61511 1.10675 1.34512 1.18728 1.21732 0.89310 0.93042 1.03396 1.20708 0.82421 0.91119 0.82695 1.90470 1.49874 1.53441 1.55860 1.41964 1.06165 1.11669 1.61599 1.19696 0.92417 0.88514 1.45246 0.90180 1.26044 0.94879 1.03576 0.96973 1.69683 1.01205 1.35804 1.49655 0.84867 0.78108 0.77193 0.78142 1.19674 1.19751 1.19710 1.22115 0.95626 0.88715 1.00399 1.21838 0.94433 1.02211 0.96744 0.91234 0.92447 0.91265 0.93068 0.93139 0.90997 0.89079 0.93138 0.93075 0.89095 0.91061 0.75067 0.91472 0.89810 0.90506 0.95090 0.91680 0.87124 0.91880 0.77138 0.91402 0.89289 0.94535 0.91397 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.21 71.98 0.66 -0.78 16 2 C -0.10 -1.55 4.28 30.60 0.13 -1.42 16 3 C -0.08 -1.09 0.64 -52.93 -0.03 -1.13 16 4 C -0.14 -1.43 8.02 71.98 0.58 -0.85 16 5 C -0.14 -1.43 8.02 71.98 0.58 -0.85 16 6 C 0.52 11.06 6.45 87.66 0.57 11.62 16 7 O -0.59 -17.69 15.64 -3.02 -0.05 -17.73 16 8 N -0.71 -13.15 4.87 -442.15 -2.15 -15.31 16 9 C 0.15 3.47 2.52 45.07 0.11 3.58 16 10 C -0.11 -2.59 5.57 30.65 0.17 -2.42 16 11 C 0.06 1.89 5.12 86.33 0.44 2.33 16 12 N -0.53 -17.13 4.35 -900.94 -3.92 -21.05 16 13 C 0.06 1.98 5.45 85.56 0.47 2.45 16 14 C 0.44 21.04 7.31 87.66 0.64 21.68 16 15 O -0.61 -33.20 14.29 -3.07 -0.04 -33.24 16 16 N -0.58 -29.64 5.29 -306.98 -1.62 -31.26 16 17 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 18 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 19 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 20 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 21 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 C 0.06 1.52 5.46 86.33 0.47 1.99 16 26 C -0.11 -2.66 5.68 30.65 0.17 -2.49 16 27 H 0.07 0.52 6.43 -2.39 -0.02 0.51 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.52 6.43 -2.39 -0.02 0.50 16 30 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.07 0.58 7.56 -2.39 -0.02 0.56 16 33 H 0.09 0.59 6.43 -2.39 -0.02 0.57 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.59 6.43 -2.39 -0.02 0.58 16 37 H 0.07 0.59 7.56 -2.39 -0.02 0.57 16 38 H 0.41 5.49 7.44 -92.71 -0.69 4.80 16 39 H 0.07 1.81 7.58 -2.39 -0.02 1.79 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 2.57 6.06 -2.39 -0.01 2.55 16 44 H 0.11 3.44 7.98 -2.39 -0.02 3.42 16 45 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 46 H 0.39 19.42 7.90 -92.71 -0.73 18.69 16 47 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 48 H 0.09 2.07 8.01 -2.39 -0.02 2.05 16 49 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -71.28 396.11 0.27 -71.00 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.49 Total: 36.81 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.24 Total: 15.51 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -7.41 Total: -117.37 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.09 Total: -50.98 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -71.28 0.27 -71.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228935037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.966 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds