Wall clock time and date at job start Fri Apr 10 2020 18:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47452 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47452 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99568 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00195 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99942 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.27376 * 325.69832 * 10 9 7 12 12 C 1.54596 * 110.30860 * 87.79074 * 10 9 7 13 13 C 1.55188 * 102.80170 * 96.98181 * 12 10 9 14 14 N 1.48531 * 103.24232 * 37.42962 * 13 12 10 15 15 C 1.46900 * 111.00559 * 200.25465 * 14 13 12 16 16 C 1.50700 * 109.47151 * 287.39830 * 15 14 13 17 17 O 1.21292 * 120.00147 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99789 * 179.97438 * 16 15 14 19 19 C 1.37106 * 119.99984 * 180.02562 * 18 16 15 20 20 H 1.07994 * 119.99512 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99824 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00178 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99709 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46995 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47232 * 119.99694 * 23 21 19 26 26 H 1.48501 * 109.47054 * 239.99703 * 23 21 19 27 27 C 1.47902 * 105.81921 * 320.77358 * 14 13 12 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00216 * 4 3 2 36 36 H 1.09001 * 109.47289 * 60.00300 * 4 3 2 37 37 H 1.09002 * 109.46935 * 300.00125 * 5 4 3 38 38 H 1.09001 * 109.46812 * 59.99783 * 5 4 3 39 39 H 1.09002 * 109.47153 * 299.99992 * 6 5 4 40 40 H 1.09001 * 109.46832 * 59.99801 * 6 5 4 41 41 H 0.97004 * 120.00402 * 0.02562 * 9 7 6 42 42 H 1.09005 * 110.72271 * 215.31451 * 12 10 9 43 43 H 1.08999 * 110.72437 * 338.60016 * 12 10 9 44 44 H 1.09001 * 110.68211 * 278.98358 * 13 12 10 45 45 H 1.08999 * 110.78731 * 155.92995 * 13 12 10 46 46 H 1.09002 * 109.46691 * 47.40118 * 15 14 13 47 47 H 1.09002 * 109.47188 * 167.39986 * 15 14 13 48 48 H 0.96996 * 120.00117 * 0.02562 * 18 16 15 49 49 H 0.97002 * 119.99895 * 180.02562 * 22 21 19 50 50 H 1.08993 * 109.91561 * 265.96861 * 27 14 13 51 51 H 1.09003 * 110.07788 * 144.77134 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 6 6.1125 4.3057 0.0013 8 8 5.3243 5.2275 0.0018 9 7 7.4375 4.5519 0.0008 10 6 7.9259 5.9331 0.0013 11 1 7.2551 6.5711 -0.5742 12 6 8.0528 6.4568 1.4504 13 6 9.5559 6.2348 1.7658 14 7 10.2244 6.5530 0.4782 15 6 11.5661 5.9577 0.4202 16 6 12.4916 6.7146 1.3376 17 8 12.0747 7.6576 1.9765 18 7 13.7826 6.3438 1.4481 19 6 14.6245 7.0321 2.2831 20 1 14.2532 7.8716 2.8520 21 6 15.9556 6.6500 2.3966 22 7 16.4075 5.6288 1.7041 23 14 17.1025 7.5874 3.5349 24 1 16.3540 8.6862 4.1964 25 1 17.6406 6.6637 4.5657 26 1 18.2246 8.1577 2.7469 27 6 9.3514 5.9962 -0.5778 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.9330 0.9287 0.8908 36 1 3.9338 0.9285 -0.8891 37 1 3.7171 3.3990 -0.8887 38 1 3.7164 3.3985 0.8913 39 1 5.9734 2.3707 0.8911 40 1 5.9734 2.3714 -0.8889 41 1 8.0679 3.8146 0.0000 42 1 7.7996 7.5158 1.5013 43 1 7.4254 5.8761 2.1267 44 1 9.7408 5.1986 2.0494 45 1 9.8907 6.9127 2.5510 46 1 11.5150 4.9154 0.7349 47 1 11.9434 6.0109 -0.6010 48 1 14.1161 5.5899 0.9369 49 1 17.3366 5.3619 1.7836 50 1 9.6873 4.9950 -0.8476 51 1 9.3673 6.6421 -1.4557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269087905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:15 Heat of formation + Delta-G solvation = -97.759566 kcal Electronic energy + Delta-G solvation = -26798.212863 eV Core-core repulsion = 22924.267712 eV Total energy + Delta-G solvation = -3873.945150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28184 -38.88643 -37.57493 -36.71453 -34.43515 -33.79741 -33.71176 -31.41452 -30.94618 -29.63693 -28.44786 -26.58870 -25.12950 -24.15289 -22.11888 -21.40511 -21.33868 -20.70672 -20.24437 -19.17988 -17.88098 -17.24462 -16.68908 -16.46768 -15.98647 -15.59895 -15.16756 -14.92476 -14.57399 -14.44753 -14.26673 -14.09553 -13.93046 -13.61331 -13.37208 -13.17441 -12.98913 -12.74454 -12.57858 -12.20270 -11.90045 -11.85815 -11.82029 -11.71601 -11.49474 -11.31800 -11.30475 -11.18975 -11.11056 -11.02846 -10.96870 -10.85247 -10.77956 -10.34404 -10.22581 -9.95910 -9.50773 -9.20838 -8.51015 -8.02078 -7.94429 -6.41960 -3.82581 2.46741 2.95384 3.16131 3.26785 3.34135 3.90397 4.02844 4.24302 4.30901 4.43576 4.48873 4.53821 4.70148 4.71074 4.76111 4.84640 4.98767 5.01247 5.09063 5.18248 5.24480 5.25291 5.30936 5.33478 5.37789 5.43034 5.46252 5.55515 5.59609 5.62334 5.72055 5.72447 5.73268 5.78682 5.89477 5.90042 5.95685 5.97437 6.05514 6.12059 6.26795 6.38288 6.41244 7.10993 7.16177 7.30939 7.55387 8.05307 8.06563 8.62006 9.18568 9.54564 10.06673 10.75979 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.001600 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.143210 B =17493.736797 C =17923.421649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.104 4.104 6 C -0.142 4.142 7 C 0.511 3.489 8 O -0.540 6.540 9 N -0.725 5.725 10 C 0.133 3.867 11 H 0.098 0.902 12 C -0.129 4.129 13 C 0.041 3.959 14 N -0.489 5.489 15 C 0.037 3.963 16 C 0.445 3.555 17 O -0.576 6.576 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.030 3.970 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.399 0.601 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.099 0.901 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.391 0.609 49 H 0.270 0.730 50 H 0.048 0.952 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.870 -13.072 -6.304 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.142 4.142 6 C -0.182 4.182 7 C 0.298 3.702 8 O -0.417 6.417 9 N -0.378 5.378 10 C 0.028 3.972 11 H 0.116 0.884 12 C -0.169 4.169 13 C -0.087 4.087 14 N -0.214 5.214 15 C -0.095 4.095 16 C 0.230 3.770 17 O -0.459 6.459 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.099 4.099 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.233 0.767 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.118 0.882 46 H 0.067 0.933 47 H 0.107 0.893 48 H 0.224 0.776 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.447 -11.267 -5.946 27.567 hybrid contribution 1.338 -1.421 0.249 1.968 sum -23.109 -12.688 -5.697 26.971 Atomic orbital electron populations 1.21784 0.95970 1.01519 1.01852 1.21541 0.95834 0.97004 1.01930 1.21617 0.95285 0.96660 1.02298 1.21630 0.95613 0.96530 1.02054 1.21348 0.92640 0.96580 1.03646 1.21714 0.98223 0.93859 1.04378 1.20765 0.82131 0.91775 0.75509 1.90711 1.55239 1.46567 1.49149 1.46285 1.07201 1.08666 1.75609 1.21829 0.95191 0.82633 0.97547 0.88405 1.22942 0.96367 1.02283 0.95264 1.23345 0.92294 0.99536 0.93487 1.64506 1.00500 1.54040 1.02327 1.22074 0.90207 0.96198 1.00990 1.19689 0.83187 0.87422 0.86673 1.90515 1.75932 1.30571 1.48869 1.41862 1.07592 1.30444 1.40428 1.19751 0.90085 1.12747 1.20100 0.87875 1.25242 0.97635 0.96834 0.98225 1.69618 1.16676 1.26631 1.41534 0.85813 0.79732 0.79342 0.79550 1.19208 1.20809 1.20761 1.23185 0.91093 0.99048 0.96574 0.92770 0.92746 0.92874 0.92096 0.92120 0.91933 0.91914 0.91940 0.91968 0.91227 0.91188 0.88925 0.88968 0.76707 0.89795 0.91016 0.94498 0.88241 0.93288 0.89324 0.77570 0.91975 0.93341 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.13 -0.67 5.93 -26.74 -0.16 -0.82 16 3 C -0.12 -0.71 5.21 -26.74 -0.14 -0.85 16 4 C -0.12 -0.69 5.21 -26.73 -0.14 -0.83 16 5 C -0.10 -0.78 4.50 -26.73 -0.12 -0.90 16 6 C -0.14 -0.96 5.70 -27.89 -0.16 -1.12 16 7 C 0.51 5.31 7.83 -10.99 -0.09 5.23 16 8 O -0.54 -7.78 15.66 5.55 0.09 -7.70 16 9 N -0.73 -6.83 5.07 -52.49 -0.27 -7.09 16 10 C 0.13 1.54 3.31 -66.57 -0.22 1.32 16 11 H 0.10 1.23 7.60 -51.93 -0.39 0.84 16 12 C -0.13 -1.69 6.80 -24.73 -0.17 -1.86 16 13 C 0.04 0.63 5.94 -1.76 -0.01 0.62 16 14 N -0.49 -7.92 4.91 -231.73 -1.14 -9.06 16 15 C 0.04 0.64 5.19 -4.98 -0.03 0.61 16 16 C 0.45 10.41 7.61 -10.99 -0.08 10.32 16 17 O -0.58 -15.51 14.64 5.55 0.08 -15.43 16 18 N -0.57 -14.20 5.29 -10.96 -0.06 -14.26 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 C 0.03 0.36 6.44 -2.75 -0.02 0.34 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.40 2.84 8.31 -40.82 -0.34 2.50 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.07 0.90 8.05 -51.93 -0.42 0.49 16 44 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 45 H 0.10 1.86 7.10 -51.93 -0.37 1.49 16 46 H 0.05 0.76 7.83 -51.93 -0.41 0.35 16 47 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 48 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 49 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 50 H 0.05 0.50 7.25 -51.93 -0.38 0.12 16 51 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 411.70 15.07 6.20 6.20 Total: -1.00 -32.83 411.70 -9.89 -42.71 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -9.30 Total: 8.58 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.20 Total: 3.75 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.74 Total: -54.08 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.17 Total: -23.12 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.83 -9.89 -42.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269087905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.046 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds