Wall clock time and date at job start Fri Apr 10 2020 18:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47452 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47452 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99568 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00195 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99942 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.27376 * 325.69832 * 10 9 7 12 12 C 1.54596 * 110.30860 * 87.79074 * 10 9 7 13 13 C 1.55188 * 102.80170 * 96.98181 * 12 10 9 14 14 N 1.48531 * 103.24232 * 37.42962 * 13 12 10 15 15 C 1.46900 * 111.00559 * 200.25465 * 14 13 12 16 16 C 1.50700 * 109.47151 * 287.39830 * 15 14 13 17 17 O 1.21292 * 120.00147 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99789 * 179.97438 * 16 15 14 19 19 C 1.37106 * 119.99984 * 180.02562 * 18 16 15 20 20 H 1.07994 * 119.99512 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99824 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00178 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99709 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46995 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47232 * 119.99694 * 23 21 19 26 26 H 1.48501 * 109.47054 * 239.99703 * 23 21 19 27 27 C 1.47902 * 105.81921 * 320.77358 * 14 13 12 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00216 * 4 3 2 36 36 H 1.09001 * 109.47289 * 60.00300 * 4 3 2 37 37 H 1.09002 * 109.46935 * 300.00125 * 5 4 3 38 38 H 1.09001 * 109.46812 * 59.99783 * 5 4 3 39 39 H 1.09002 * 109.47153 * 299.99992 * 6 5 4 40 40 H 1.09001 * 109.46832 * 59.99801 * 6 5 4 41 41 H 0.97004 * 120.00402 * 0.02562 * 9 7 6 42 42 H 1.09005 * 110.72271 * 215.31451 * 12 10 9 43 43 H 1.08999 * 110.72437 * 338.60016 * 12 10 9 44 44 H 1.09001 * 110.68211 * 278.98358 * 13 12 10 45 45 H 1.08999 * 110.78731 * 155.92995 * 13 12 10 46 46 H 1.09002 * 109.46691 * 47.40118 * 15 14 13 47 47 H 1.09002 * 109.47188 * 167.39986 * 15 14 13 48 48 H 0.96996 * 120.00117 * 0.02562 * 18 16 15 49 49 H 0.97002 * 119.99895 * 180.02562 * 22 21 19 50 50 H 1.08993 * 109.91561 * 265.96861 * 27 14 13 51 51 H 1.09003 * 110.07788 * 144.77134 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 6 5.6101 2.8849 0.0013 7 6 6.1125 4.3057 0.0013 8 8 5.3243 5.2275 0.0018 9 7 7.4375 4.5519 0.0008 10 6 7.9259 5.9331 0.0013 11 1 7.2551 6.5711 -0.5742 12 6 8.0528 6.4568 1.4504 13 6 9.5559 6.2348 1.7658 14 7 10.2244 6.5530 0.4782 15 6 11.5661 5.9577 0.4202 16 6 12.4916 6.7146 1.3376 17 8 12.0747 7.6576 1.9765 18 7 13.7826 6.3438 1.4481 19 6 14.6245 7.0321 2.2831 20 1 14.2532 7.8716 2.8520 21 6 15.9556 6.6500 2.3966 22 7 16.4075 5.6288 1.7041 23 14 17.1025 7.5874 3.5349 24 1 16.3540 8.6862 4.1964 25 1 17.6406 6.6637 4.5657 26 1 18.2246 8.1577 2.7469 27 6 9.3514 5.9962 -0.5778 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.9330 0.9287 0.8908 36 1 3.9338 0.9285 -0.8891 37 1 3.7171 3.3990 -0.8887 38 1 3.7164 3.3985 0.8913 39 1 5.9734 2.3707 0.8911 40 1 5.9734 2.3714 -0.8889 41 1 8.0679 3.8146 0.0000 42 1 7.7996 7.5158 1.5013 43 1 7.4254 5.8761 2.1267 44 1 9.7408 5.1986 2.0494 45 1 9.8907 6.9127 2.5510 46 1 11.5150 4.9154 0.7349 47 1 11.9434 6.0109 -0.6010 48 1 14.1161 5.5899 0.9369 49 1 17.3366 5.3619 1.7836 50 1 9.6873 4.9950 -0.8476 51 1 9.3673 6.6421 -1.4557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269087905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:14 Heat of formation + Delta-G solvation = -120.761702 kcal Electronic energy + Delta-G solvation = -26799.210310 eV Core-core repulsion = 22924.267712 eV Total energy + Delta-G solvation = -3874.942598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23909 -40.28304 -39.04381 -37.23920 -35.99223 -35.25886 -34.26512 -33.28567 -32.21032 -30.31356 -29.44265 -28.06626 -26.13107 -25.52595 -22.86340 -22.43338 -21.83398 -21.58565 -21.18348 -20.85796 -19.86207 -18.04341 -17.97245 -17.33116 -17.05630 -16.63740 -16.46100 -16.15547 -16.05174 -15.74987 -15.45058 -14.87547 -14.79795 -14.73670 -14.55303 -14.24167 -13.82498 -13.61759 -13.48950 -13.45216 -13.19008 -13.06437 -12.94116 -12.78711 -12.46580 -12.38229 -12.33960 -12.30815 -12.26566 -12.11198 -11.92677 -11.77793 -11.59169 -11.48100 -11.48024 -11.31784 -10.81324 -10.30832 -10.10139 -9.98635 -9.31274 -8.45608 -5.93650 1.36813 1.42252 1.55993 1.67554 2.08139 2.15414 2.30425 2.85517 3.21485 3.37755 3.52571 3.75853 3.77450 3.86971 4.02797 4.07251 4.22525 4.24415 4.25620 4.33580 4.35858 4.37893 4.45441 4.54695 4.58349 4.60341 4.69367 4.78019 4.81638 4.85528 4.91682 4.96283 5.02082 5.03427 5.11033 5.12369 5.16241 5.25118 5.28486 5.41934 5.42663 5.49089 5.50876 5.57127 5.84853 5.95291 6.10146 6.57168 6.63061 7.15410 7.29336 7.59059 8.15782 8.72018 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.001600 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.143210 B =17493.736797 C =17923.421649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.102 4.102 6 C -0.133 4.133 7 C 0.508 3.492 8 O -0.586 6.586 9 N -0.713 5.713 10 C 0.142 3.858 11 H 0.088 0.912 12 C -0.121 4.121 13 C 0.045 3.955 14 N -0.516 5.516 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.036 3.964 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.414 0.586 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.078 0.922 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.658 -15.386 -7.284 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.160 4.160 4 C -0.151 4.151 5 C -0.140 4.140 6 C -0.173 4.173 7 C 0.297 3.703 8 O -0.466 6.466 9 N -0.366 5.366 10 C 0.036 3.964 11 H 0.106 0.894 12 C -0.161 4.161 13 C -0.083 4.083 14 N -0.241 5.241 15 C -0.081 4.081 16 C 0.228 3.772 17 O -0.503 6.503 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.091 4.091 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.131 0.869 48 H 0.230 0.770 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.220 -13.633 -6.951 28.649 hybrid contribution 1.212 -0.673 0.550 1.491 sum -23.008 -14.306 -6.401 27.839 Atomic orbital electron populations 1.21802 0.95990 1.01833 1.01683 1.21529 0.95859 0.96480 1.02267 1.21621 0.95678 0.97031 1.01675 1.21576 0.95232 0.95321 1.02969 1.21299 0.93399 0.97377 1.01960 1.21746 0.97386 0.91543 1.06612 1.21436 0.81851 0.92813 0.74213 1.90701 1.56378 1.48265 1.51265 1.46153 1.07381 1.08166 1.74937 1.21574 0.95020 0.83787 0.95973 0.89371 1.22837 0.94759 1.01813 0.96659 1.23183 0.93509 0.99054 0.92504 1.64389 1.00710 1.55475 1.03554 1.21938 0.89455 0.96307 1.00376 1.20832 0.83180 0.86894 0.86325 1.90494 1.76665 1.32586 1.50604 1.41915 1.08194 1.30630 1.40515 1.19667 0.91448 1.13295 1.21714 0.90582 1.25966 0.98345 0.97486 0.99257 1.69666 1.17338 1.27112 1.41987 0.84916 0.77718 0.78049 0.77930 1.19997 1.19580 1.19649 1.23184 0.90083 1.00642 0.95225 0.92894 0.93011 0.92316 0.91820 0.91647 0.92488 0.92709 0.91110 0.90813 0.92807 0.93141 0.86794 0.86306 0.74879 0.91086 0.90535 0.93197 0.92401 0.90537 0.86935 0.76970 0.91351 0.90411 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.91 71.98 0.71 -0.72 16 2 C -0.12 -1.14 5.93 30.59 0.18 -0.96 16 3 C -0.12 -1.33 5.21 30.59 0.16 -1.17 16 4 C -0.11 -1.08 5.21 30.60 0.16 -0.92 16 5 C -0.10 -1.40 4.50 30.60 0.14 -1.26 16 6 C -0.13 -1.44 5.70 29.85 0.17 -1.27 16 7 C 0.51 9.63 7.83 87.66 0.69 10.31 16 8 O -0.59 -16.71 15.66 -3.06 -0.05 -16.76 16 9 N -0.71 -11.52 5.07 -438.37 -2.22 -13.74 16 10 C 0.14 3.06 3.31 45.87 0.15 3.21 16 11 H 0.09 2.14 7.60 -2.39 -0.02 2.12 16 12 C -0.12 -3.13 6.80 31.89 0.22 -2.92 16 13 C 0.05 1.39 5.94 86.74 0.52 1.90 16 14 N -0.52 -16.03 4.91 -887.05 -4.35 -20.38 16 15 C 0.05 1.65 5.19 85.56 0.44 2.09 16 16 C 0.44 20.72 7.61 87.66 0.67 21.39 16 17 O -0.62 -34.39 14.64 -3.07 -0.04 -34.43 16 18 N -0.57 -29.09 5.29 -306.99 -1.62 -30.71 16 19 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 22 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 23 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 C 0.04 0.78 6.44 86.45 0.56 1.33 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 39 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.41 4.25 8.31 -92.71 -0.77 3.48 16 42 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.08 1.89 8.05 -2.39 -0.02 1.87 16 44 H 0.05 1.38 7.81 -2.39 -0.02 1.36 16 45 H 0.06 2.26 7.10 -2.39 -0.02 2.24 16 46 H 0.08 2.11 7.83 -2.39 -0.02 2.09 16 47 H 0.11 3.17 8.08 -2.39 -0.02 3.15 16 48 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 49 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 50 H 0.08 1.23 7.25 -2.39 -0.02 1.22 16 51 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -73.54 411.70 -0.53 -74.07 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.59 Total: 32.85 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 6.04 Total: 12.95 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -7.91 Total: -113.57 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -0.09 Total: -51.19 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.54 -0.53 -74.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269087905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.690 kcal (2) G-P(sol) polarization free energy of solvation -73.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds