Wall clock time and date at job start Fri Apr 10 2020 18:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 119.99832 * 2 1 4 4 C 1.34780 * 120.00212 * 180.02562 * 2 1 3 5 5 O 1.21287 * 119.99640 * 359.97438 * 4 2 1 6 6 C 1.50693 * 120.00052 * 179.97438 * 4 2 1 7 7 N 1.46905 * 109.47322 * 179.97438 * 6 4 2 8 8 C 1.48040 * 111.00391 * 170.00063 * 7 6 4 9 9 C 1.53475 * 86.05354 * 222.70312 * 8 7 6 10 10 C 1.48037 * 110.99989 * 70.55654 * 7 6 4 11 11 C 1.52774 * 113.55592 * 137.76845 * 9 8 7 12 12 O 1.43384 * 108.25328 * 176.83456 * 11 9 8 13 13 C 1.42816 * 113.34273 * 294.37420 * 12 11 9 14 14 C 1.50273 * 110.50085 * 51.28802 * 13 12 11 15 15 O 1.21284 * 118.97063 * 161.33676 * 14 13 12 16 16 N 1.34272 * 122.06104 * 341.61847 * 14 13 12 17 17 C 1.46498 * 119.38325 * 181.96166 * 16 14 13 18 18 C 1.52999 * 109.47226 * 274.15057 * 17 16 14 19 19 C 1.50706 * 109.46965 * 174.90379 * 18 17 16 20 20 H 1.07997 * 120.00164 * 0.02562 * 19 18 17 21 21 C 1.37868 * 119.99816 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00302 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47007 * 60.00387 * 23 21 19 25 25 H 1.48499 * 109.47343 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47154 * 300.00730 * 23 21 19 27 27 H 1.08998 * 109.46968 * 269.99448 * 1 2 3 28 28 H 1.08993 * 109.47366 * 29.99762 * 1 2 3 29 29 H 1.09007 * 109.47388 * 149.99498 * 1 2 3 30 30 H 1.09004 * 109.47027 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47534 * 300.00234 * 3 2 1 32 32 H 1.09001 * 109.47102 * 60.00763 * 3 2 1 33 33 H 1.09001 * 109.47109 * 60.00072 * 6 4 2 34 34 H 1.08992 * 109.47236 * 299.99628 * 6 4 2 35 35 H 1.09002 * 113.77977 * 108.41284 * 8 7 6 36 36 H 1.09007 * 113.77509 * 336.98883 * 8 7 6 37 37 H 1.09002 * 113.77462 * 23.01486 * 10 7 6 38 38 H 1.08995 * 113.78451 * 251.58203 * 10 7 6 39 39 H 1.08996 * 109.70454 * 57.14818 * 11 9 8 40 40 H 1.09000 * 109.73909 * 296.54323 * 11 9 8 41 41 H 1.09003 * 109.26889 * 291.02413 * 13 12 11 42 42 H 1.09002 * 109.27160 * 171.55765 * 13 12 11 43 43 H 1.08998 * 109.46667 * 34.14803 * 17 16 14 44 44 H 1.08998 * 109.47096 * 154.14573 * 17 16 14 45 45 H 1.09004 * 109.46986 * 294.90285 * 18 17 16 46 46 H 1.09000 * 109.46943 * 54.90579 * 18 17 16 47 47 H 0.97006 * 120.00019 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1356 -2.5522 -0.0010 8 6 5.5956 -2.5987 -0.2415 9 6 5.2968 -3.7785 -1.1766 10 6 3.8783 -3.2060 -1.3040 11 6 6.0893 -3.7387 -2.4821 12 8 5.7813 -4.9221 -3.2307 13 6 6.2299 -6.1229 -2.6010 14 6 5.7600 -6.1763 -1.1746 15 8 5.7474 -7.2442 -0.5999 16 7 5.3485 -5.0796 -0.5182 17 6 4.9434 -5.1916 0.8852 18 6 3.4692 -5.5944 0.9598 19 6 3.0855 -5.8314 2.3978 20 1 3.8194 -5.7068 3.1802 21 6 1.7971 -6.2063 2.7146 22 7 0.9031 -6.3576 1.7619 23 14 1.3212 -6.4994 4.4970 24 1 1.5346 -5.2541 5.2775 25 1 -0.1096 -6.8904 4.5695 26 1 2.1604 -7.5870 5.0611 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 3.2691 1.0695 -0.0005 31 1 1.9341 1.8403 -0.8899 32 1 1.9342 1.8402 0.8901 33 1 4.0095 -0.6535 0.8889 34 1 4.0088 -0.6532 -0.8911 35 1 6.1776 -2.8719 0.6387 36 1 5.9848 -1.7190 -0.7543 37 1 3.7594 -2.5060 -2.1310 38 1 3.0942 -3.9624 -1.2690 39 1 7.1567 -3.7097 -2.2633 40 1 5.8078 -2.8564 -3.0569 41 1 7.3192 -6.1550 -2.6224 42 1 5.8346 -6.9824 -3.1425 43 1 5.5523 -5.9483 1.3798 44 1 5.0833 -4.2313 1.3815 45 1 2.8531 -4.7960 0.5461 46 1 3.3128 -6.5083 0.3867 47 1 -0.0032 -6.6217 1.9849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272534258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:21 Heat of formation + Delta-G solvation = -39.561700 kcal Electronic energy + Delta-G solvation = -29981.580881 eV Core-core repulsion = 25974.326285 eV Total energy + Delta-G solvation = -4007.254596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36591 -39.68482 -38.50059 -37.32491 -35.38467 -34.53601 -32.74401 -31.14160 -29.65156 -28.97834 -27.69469 -26.81274 -26.28101 -25.71052 -24.04736 -23.03197 -21.00622 -20.63815 -19.16860 -18.09390 -17.44664 -17.09761 -16.60513 -16.31889 -16.01723 -15.86408 -15.53960 -15.17177 -14.84114 -14.62196 -14.28375 -14.20621 -13.69094 -13.56603 -13.26759 -12.86742 -12.76720 -12.70159 -12.55873 -12.35541 -12.18507 -12.07419 -12.00149 -11.94208 -11.37157 -11.10826 -11.06256 -10.81485 -10.71486 -10.52324 -10.32210 -9.61817 -9.54953 -9.47652 -9.11851 -8.78625 -8.66512 -8.53366 -8.04082 -7.94952 -5.71359 -3.71430 2.84657 2.91548 2.97925 3.22376 3.48876 3.51789 3.54735 3.64113 3.92512 4.40803 4.45627 4.60711 4.63699 4.68233 4.85854 4.91822 5.08131 5.13207 5.14926 5.19945 5.22451 5.29654 5.31044 5.36743 5.41975 5.48518 5.58679 5.59981 5.64912 5.80292 5.87896 6.18061 6.37380 6.45695 6.53982 6.71449 6.76808 6.96795 7.02483 7.23320 7.40185 7.86619 7.99668 8.25682 8.36363 8.43289 8.56247 8.71604 9.34439 9.88481 11.40169 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007198 B = 0.006878 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3888.884155 B = 4070.072143 C = 7234.832526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.633 5.633 3 C 0.080 3.920 4 C 0.502 3.498 5 O -0.483 6.483 6 C 0.005 3.995 7 N -0.435 5.435 8 C -0.004 4.004 9 C 0.108 3.892 10 C 0.011 3.989 11 C 0.064 3.936 12 O -0.368 6.368 13 C 0.049 3.951 14 C 0.480 3.520 15 O -0.530 6.530 16 N -0.571 5.571 17 C 0.121 3.879 18 C 0.018 3.982 19 C -0.509 4.509 20 H 0.049 0.951 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.887 3.113 24 H -0.280 1.280 25 H -0.289 1.289 26 H -0.279 1.279 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.127 0.873 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.009 0.991 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.721 18.866 -10.524 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.371 5.371 3 C -0.064 4.064 4 C 0.288 3.712 5 O -0.354 6.354 6 C -0.126 4.126 7 N -0.157 5.157 8 C -0.134 4.134 9 C 0.020 3.980 10 C -0.118 4.118 11 C -0.014 4.014 12 O -0.286 6.286 13 C -0.031 4.031 14 C 0.266 3.734 15 O -0.407 6.407 16 N -0.302 5.302 17 C 0.001 3.999 18 C -0.019 4.019 19 C -0.548 4.548 20 H 0.067 0.933 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.715 3.285 24 H -0.205 1.205 25 H -0.215 1.215 26 H -0.205 1.205 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.145 0.855 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.028 0.972 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.800 17.369 -9.800 21.798 hybrid contribution -0.096 0.650 0.665 0.935 sum 8.705 18.019 -9.135 21.997 Atomic orbital electron populations 1.21548 0.79239 1.02751 1.01863 1.47765 1.07024 1.06156 1.76173 1.21766 0.97229 0.85755 1.01644 1.20558 0.89878 0.83482 0.77258 1.90918 1.69310 1.30038 1.45112 1.22607 0.93386 0.93979 1.02656 1.68780 1.04457 1.11139 1.31371 1.24408 0.92493 0.96602 0.99875 1.22172 0.97252 0.85580 0.93036 1.24437 0.98251 0.98964 0.90162 1.22960 0.98456 0.89295 0.90694 1.88136 1.80798 1.13767 1.45875 1.22807 1.00287 0.89240 0.90742 1.20900 0.78685 0.84388 0.89390 1.90772 1.54063 1.27679 1.68139 1.47508 1.63497 1.05241 1.13971 1.21973 1.00117 1.01046 0.76743 1.19361 0.88656 0.97105 0.96825 1.20984 0.95396 1.45866 0.92533 0.93302 1.24916 0.96681 0.95930 0.96537 1.69981 1.03376 1.47859 1.31564 0.86759 0.77231 0.78366 0.86138 1.20544 1.21512 1.20467 0.92905 0.91756 0.90390 0.90561 0.92374 0.92253 0.87885 0.91876 0.88007 0.90262 0.91213 0.86957 0.91697 0.87113 0.89945 0.85490 0.92050 0.90493 0.94040 0.97214 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 10.48 59.85 0.63 1.65 16 2 N -0.63 -7.60 3.27 -189.52 -0.62 -8.22 16 3 C 0.08 0.56 10.60 59.84 0.63 1.19 16 4 C 0.50 7.90 7.48 -10.99 -0.08 7.82 16 5 O -0.48 -10.65 15.13 5.55 0.08 -10.56 16 6 C 0.01 0.06 3.61 -4.98 -0.02 0.05 16 7 N -0.44 -6.78 4.34 -241.83 -1.05 -7.83 16 8 C 0.00 -0.05 6.53 -2.96 -0.02 -0.07 16 9 C 0.11 1.53 1.56 -135.17 -0.21 1.32 16 10 C 0.01 0.18 5.36 -2.94 -0.02 0.16 16 11 C 0.06 0.68 6.09 37.04 0.23 0.90 16 12 O -0.37 -4.89 10.84 -35.23 -0.38 -5.27 16 13 C 0.05 0.67 6.94 35.80 0.25 0.92 16 14 C 0.48 9.20 7.61 -11.42 -0.09 9.12 16 15 O -0.53 -12.58 16.56 5.55 0.09 -12.49 16 16 N -0.57 -10.73 2.66 -162.14 -0.43 -11.16 16 17 C 0.12 2.75 4.41 -4.04 -0.02 2.74 16 18 C 0.02 0.52 5.06 -27.88 -0.14 0.38 16 19 C -0.51 -15.71 9.11 -34.44 -0.31 -16.02 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.89 5.46 -17.82 -0.10 1.79 16 22 N -0.89 -29.28 13.29 55.43 0.74 -28.54 16 23 Si 0.89 23.56 29.54 -169.99 -5.02 18.54 16 24 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 29 H 0.08 1.08 7.42 -51.92 -0.39 0.69 16 30 H 0.08 0.42 5.77 -51.93 -0.30 0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 1.07 7.79 -51.93 -0.40 0.67 16 34 H 0.06 0.54 7.34 -51.93 -0.38 0.16 16 35 H 0.10 1.25 6.99 -51.93 -0.36 0.89 16 36 H 0.08 0.60 7.74 -51.93 -0.40 0.19 16 37 H 0.07 0.89 7.54 -51.93 -0.39 0.50 16 38 H 0.11 2.42 6.86 -51.93 -0.36 2.06 16 39 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 40 H 0.11 0.86 7.86 -51.93 -0.41 0.45 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.13 1.65 8.14 -51.93 -0.42 1.22 16 43 H 0.06 1.49 7.49 -51.93 -0.39 1.10 16 44 H 0.08 1.64 5.43 -51.93 -0.28 1.35 16 45 H 0.04 1.26 6.05 -51.93 -0.31 0.95 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -41.60 372.63 -7.54 -49.14 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.30 Total: -1.17 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 0.73 Total: 11.96 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -1.37 Total: -55.76 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.21 Total: -28.32 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -41.60 -7.54 -49.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272534258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.574 kcal (2) G-P(sol) polarization free energy of solvation -41.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds