Wall clock time and date at job start Fri Apr 10 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 119.99832 * 2 1 4 4 C 1.34780 * 120.00212 * 180.02562 * 2 1 3 5 5 O 1.21287 * 119.99640 * 359.97438 * 4 2 1 6 6 C 1.50693 * 120.00052 * 179.97438 * 4 2 1 7 7 N 1.46905 * 109.47322 * 179.97438 * 6 4 2 8 8 C 1.48040 * 111.00391 * 170.00063 * 7 6 4 9 9 C 1.53475 * 86.05354 * 222.70312 * 8 7 6 10 10 C 1.48037 * 110.99989 * 70.55654 * 7 6 4 11 11 C 1.52774 * 113.55592 * 137.76845 * 9 8 7 12 12 O 1.43384 * 108.25328 * 176.83456 * 11 9 8 13 13 C 1.42816 * 113.34273 * 294.37420 * 12 11 9 14 14 C 1.50273 * 110.50085 * 51.28802 * 13 12 11 15 15 O 1.21284 * 118.97063 * 161.33676 * 14 13 12 16 16 N 1.34272 * 122.06104 * 341.61847 * 14 13 12 17 17 C 1.46498 * 119.38325 * 181.96166 * 16 14 13 18 18 C 1.52999 * 109.47226 * 274.15057 * 17 16 14 19 19 C 1.50706 * 109.46965 * 174.90379 * 18 17 16 20 20 H 1.07997 * 120.00164 * 0.02562 * 19 18 17 21 21 C 1.37868 * 119.99816 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00302 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47007 * 60.00387 * 23 21 19 25 25 H 1.48499 * 109.47343 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47154 * 300.00730 * 23 21 19 27 27 H 1.08998 * 109.46968 * 269.99448 * 1 2 3 28 28 H 1.08993 * 109.47366 * 29.99762 * 1 2 3 29 29 H 1.09007 * 109.47388 * 149.99498 * 1 2 3 30 30 H 1.09004 * 109.47027 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47534 * 300.00234 * 3 2 1 32 32 H 1.09001 * 109.47102 * 60.00763 * 3 2 1 33 33 H 1.09001 * 109.47109 * 60.00072 * 6 4 2 34 34 H 1.08992 * 109.47236 * 299.99628 * 6 4 2 35 35 H 1.09002 * 113.77977 * 108.41284 * 8 7 6 36 36 H 1.09007 * 113.77509 * 336.98883 * 8 7 6 37 37 H 1.09002 * 113.77462 * 23.01486 * 10 7 6 38 38 H 1.08995 * 113.78451 * 251.58203 * 10 7 6 39 39 H 1.08996 * 109.70454 * 57.14818 * 11 9 8 40 40 H 1.09000 * 109.73909 * 296.54323 * 11 9 8 41 41 H 1.09003 * 109.26889 * 291.02413 * 13 12 11 42 42 H 1.09002 * 109.27160 * 171.55765 * 13 12 11 43 43 H 1.08998 * 109.46667 * 34.14803 * 17 16 14 44 44 H 1.08998 * 109.47096 * 154.14573 * 17 16 14 45 45 H 1.09004 * 109.46986 * 294.90285 * 18 17 16 46 46 H 1.09000 * 109.46943 * 54.90579 * 18 17 16 47 47 H 0.97006 * 120.00019 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1356 -2.5522 -0.0010 8 6 5.5956 -2.5987 -0.2415 9 6 5.2968 -3.7785 -1.1766 10 6 3.8783 -3.2060 -1.3040 11 6 6.0893 -3.7387 -2.4821 12 8 5.7813 -4.9221 -3.2307 13 6 6.2299 -6.1229 -2.6010 14 6 5.7600 -6.1763 -1.1746 15 8 5.7474 -7.2442 -0.5999 16 7 5.3485 -5.0796 -0.5182 17 6 4.9434 -5.1916 0.8852 18 6 3.4692 -5.5944 0.9598 19 6 3.0855 -5.8314 2.3978 20 1 3.8194 -5.7068 3.1802 21 6 1.7971 -6.2063 2.7146 22 7 0.9031 -6.3576 1.7619 23 14 1.3212 -6.4994 4.4970 24 1 1.5346 -5.2541 5.2775 25 1 -0.1096 -6.8904 4.5695 26 1 2.1604 -7.5870 5.0611 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 3.2691 1.0695 -0.0005 31 1 1.9341 1.8403 -0.8899 32 1 1.9342 1.8402 0.8901 33 1 4.0095 -0.6535 0.8889 34 1 4.0088 -0.6532 -0.8911 35 1 6.1776 -2.8719 0.6387 36 1 5.9848 -1.7190 -0.7543 37 1 3.7594 -2.5060 -2.1310 38 1 3.0942 -3.9624 -1.2690 39 1 7.1567 -3.7097 -2.2633 40 1 5.8078 -2.8564 -3.0569 41 1 7.3192 -6.1550 -2.6224 42 1 5.8346 -6.9824 -3.1425 43 1 5.5523 -5.9483 1.3798 44 1 5.0833 -4.2313 1.3815 45 1 2.8531 -4.7960 0.5461 46 1 3.3128 -6.5083 0.3867 47 1 -0.0032 -6.6217 1.9849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272534258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:20 Heat of formation + Delta-G solvation = -75.688239 kcal Electronic energy + Delta-G solvation = -29983.147446 eV Core-core repulsion = 25974.326285 eV Total energy + Delta-G solvation = -4008.821160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.54758 -40.88120 -39.78064 -38.49393 -36.48374 -36.23576 -34.89517 -32.49671 -31.47270 -29.94953 -28.73852 -28.09397 -27.33631 -26.75567 -25.92896 -24.13932 -22.89951 -22.01109 -20.18641 -19.39643 -18.81828 -18.40458 -18.10228 -17.63165 -17.29400 -17.01578 -16.74696 -16.52455 -16.37232 -15.95243 -15.70992 -15.44397 -14.98725 -14.79266 -14.44421 -14.39211 -14.21413 -13.85911 -13.75642 -13.49063 -13.37719 -13.31129 -13.14651 -13.07643 -12.89635 -12.79799 -12.65985 -12.43342 -12.21435 -12.04063 -11.77481 -11.64421 -11.33209 -11.28348 -10.75179 -10.50338 -10.33579 -9.66419 -9.63912 -9.49099 -8.15663 -6.26640 1.30465 1.37704 1.43607 1.46000 1.72780 1.89590 2.06412 2.40407 2.67920 2.93324 3.17087 3.29162 3.46915 3.54891 3.68628 3.99012 4.14854 4.21525 4.24958 4.34444 4.38651 4.40676 4.42921 4.48965 4.54084 4.55363 4.58803 4.68098 4.74556 4.79343 4.86700 4.89511 4.96176 4.97569 5.12601 5.28599 5.41365 5.53401 5.56568 5.77305 5.81226 5.99053 6.02416 6.25537 6.45627 6.53644 6.89790 7.10899 7.34172 7.39817 8.96450 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.007198 B = 0.006878 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3888.884155 B = 4070.072143 C = 7234.832526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.629 5.629 3 C 0.072 3.928 4 C 0.489 3.511 5 O -0.569 6.569 6 C 0.012 3.988 7 N -0.490 5.490 8 C 0.018 3.982 9 C 0.095 3.905 10 C 0.017 3.983 11 C 0.066 3.934 12 O -0.378 6.378 13 C 0.064 3.936 14 C 0.465 3.535 15 O -0.592 6.592 16 N -0.574 5.574 17 C 0.144 3.856 18 C 0.039 3.961 19 C -0.534 4.534 20 H 0.058 0.942 21 C -0.004 4.004 22 N -0.933 5.933 23 Si 0.967 3.033 24 H -0.263 1.263 25 H -0.283 1.283 26 H -0.266 1.266 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.142 0.858 37 H 0.104 0.896 38 H 0.035 0.965 39 H 0.101 0.899 40 H 0.152 0.848 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.038 0.962 44 H 0.096 0.904 45 H 0.016 0.984 46 H -0.050 1.050 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.731 23.024 -10.980 28.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.365 5.365 3 C -0.070 4.070 4 C 0.277 3.723 5 O -0.446 6.446 6 C -0.119 4.119 7 N -0.213 5.213 8 C -0.111 4.111 9 C 0.008 3.992 10 C -0.113 4.113 11 C -0.011 4.011 12 O -0.296 6.296 13 C -0.015 4.015 14 C 0.254 3.746 15 O -0.474 6.474 16 N -0.304 5.304 17 C 0.023 3.977 18 C 0.001 3.999 19 C -0.572 4.572 20 H 0.076 0.924 21 C -0.201 4.201 22 N -0.573 5.573 23 Si 0.790 3.210 24 H -0.188 1.188 25 H -0.209 1.209 26 H -0.191 1.191 27 H 0.063 0.937 28 H 0.124 0.876 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.144 0.856 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.159 0.841 37 H 0.122 0.878 38 H 0.053 0.947 39 H 0.119 0.881 40 H 0.170 0.830 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.057 0.943 44 H 0.114 0.886 45 H 0.034 0.966 46 H -0.031 1.031 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.850 21.648 -10.284 26.736 hybrid contribution -1.136 -0.518 0.773 1.468 sum 10.714 21.130 -9.511 25.529 Atomic orbital electron populations 1.21578 0.79752 1.02944 1.01462 1.47966 1.07248 1.07184 1.74097 1.22131 0.98030 0.83407 1.03399 1.21460 0.91761 0.83182 0.75867 1.90902 1.71137 1.33220 1.49379 1.22709 0.90342 0.92899 1.05924 1.68615 1.07276 1.13715 1.31708 1.24464 0.90146 0.97113 0.99335 1.22666 0.97032 0.83907 0.95597 1.24200 0.96808 0.98405 0.91904 1.23348 0.99797 0.89397 0.88536 1.88137 1.81269 1.14286 1.45872 1.22746 1.02375 0.90098 0.86278 1.22147 0.77554 0.83379 0.91503 1.90728 1.56739 1.29937 1.69947 1.47510 1.62562 1.07791 1.12570 1.21333 0.95451 1.00853 0.80105 1.19049 0.92578 0.93312 0.94949 1.21485 0.96055 1.45964 0.93744 0.92427 1.26021 0.96563 0.95299 1.02252 1.70184 1.03775 1.48741 1.34585 0.85495 0.77083 0.79087 0.79292 1.18771 1.20858 1.19050 0.93685 0.87639 0.93986 0.88306 0.89970 0.91076 0.85579 0.86788 0.88652 0.84072 0.87804 0.94669 0.88144 0.83028 0.85716 0.85209 0.94302 0.88560 0.96560 1.03128 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.00 10.48 127.77 1.34 3.34 16 2 N -0.63 -14.33 3.27 -871.91 -2.85 -17.18 16 3 C 0.07 0.71 10.60 127.77 1.35 2.07 16 4 C 0.49 15.46 7.48 87.65 0.66 16.12 16 5 O -0.57 -27.26 15.13 -3.05 -0.05 -27.30 16 6 C 0.01 0.25 3.61 85.55 0.31 0.56 16 7 N -0.49 -14.78 4.34 -919.01 -3.99 -18.77 16 8 C 0.02 0.34 6.53 86.24 0.56 0.90 16 9 C 0.09 2.52 1.56 5.17 0.01 2.52 16 10 C 0.02 0.53 5.36 86.25 0.46 0.99 16 11 C 0.07 1.08 6.09 71.91 0.44 1.52 16 12 O -0.38 -8.96 10.84 -148.98 -1.61 -10.58 16 13 C 0.06 1.68 6.94 71.10 0.49 2.18 16 14 C 0.46 18.47 7.61 87.60 0.67 19.14 16 15 O -0.59 -30.14 16.56 -3.04 -0.05 -30.19 16 16 N -0.57 -22.25 2.66 -785.56 -2.09 -24.35 16 17 C 0.14 6.98 4.41 86.38 0.38 7.36 16 18 C 0.04 2.43 5.06 29.85 0.15 2.58 16 19 C -0.53 -34.89 9.11 25.60 0.23 -34.66 16 20 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 21 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 22 N -0.93 -65.55 13.29 21.44 0.28 -65.27 16 23 Si 0.97 50.13 29.54 68.60 2.03 52.16 16 24 H -0.26 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.28 -14.29 7.11 99.48 0.71 -13.59 16 26 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 1.53 8.07 -2.39 -0.02 1.51 16 29 H 0.04 1.28 7.42 -2.38 -0.02 1.26 16 30 H 0.10 0.55 5.77 -2.38 -0.01 0.54 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.13 2.09 7.79 -2.39 -0.02 2.07 16 34 H 0.11 1.25 7.34 -2.39 -0.02 1.23 16 35 H 0.10 2.01 6.99 -2.39 -0.02 1.99 16 36 H 0.14 1.00 7.74 -2.38 -0.02 0.98 16 37 H 0.10 2.44 7.54 -2.39 -0.02 2.43 16 38 H 0.03 1.67 6.86 -2.39 -0.02 1.65 16 39 H 0.10 1.04 8.13 -2.39 -0.02 1.02 16 40 H 0.15 1.31 7.86 -2.39 -0.02 1.29 16 41 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.13 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.04 2.01 7.49 -2.39 -0.02 2.00 16 44 H 0.10 4.22 5.43 -2.39 -0.01 4.21 16 45 H 0.02 1.09 6.05 -2.38 -0.01 1.07 16 46 H -0.05 -3.62 8.14 -2.39 -0.02 -3.64 16 47 H 0.26 17.06 8.31 -92.70 -0.77 16.29 16 Total: -1.00 -107.89 372.63 0.15 -107.75 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.97 Total: 8.93 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 7.52 Total: 24.80 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -8.65 Total: -125.56 kcal Atomic # 8 Polarization: -66.36 SS G_CDS: -1.71 Total: -68.07 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.03 Total: 52.16 kcal Total: -107.89 0.15 -107.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272534258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.057 kcal (2) G-P(sol) polarization free energy of solvation -107.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds