Wall clock time and date at job start Fri Apr 10 2020 18:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00580 * 2 1 4 4 O 1.21289 * 119.99307 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00507 * 180.02562 * 3 2 1 6 6 N 1.46896 * 109.47471 * 180.02562 * 5 3 2 7 7 C 1.47907 * 110.99847 * 290.80105 * 6 5 3 8 8 C 1.55023 * 104.87195 * 213.77970 * 7 6 5 9 9 C 1.54455 * 101.59708 * 36.39355 * 8 7 6 10 10 C 1.47612 * 111.00218 * 169.99822 * 6 5 3 11 11 C 1.52185 * 110.32771 * 206.32733 * 9 8 7 12 12 N 1.46236 * 109.96429 * 284.85379 * 11 9 8 13 13 C 1.46504 * 118.80215 * 162.71994 * 12 11 9 14 14 C 1.52999 * 109.47104 * 270.02329 * 13 12 11 15 15 C 1.50697 * 109.47203 * 179.97438 * 14 13 12 16 16 H 1.08007 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00041 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00167 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47246 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47319 * 119.99733 * 19 17 15 22 22 H 1.48500 * 109.46854 * 239.99867 * 19 17 15 23 23 C 1.33845 * 122.40720 * 342.73686 * 12 11 9 24 24 O 1.21275 * 118.65469 * 182.61912 * 23 12 11 25 25 C 1.50285 * 122.69284 * 2.59930 * 23 12 11 26 26 O 1.42293 * 110.30195 * 83.80565 * 9 8 7 27 27 H 1.09002 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46813 * 59.99993 * 1 2 3 29 29 H 1.09004 * 109.47041 * 300.00120 * 1 2 3 30 30 H 0.97002 * 120.00016 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47230 * 300.00192 * 5 3 2 32 32 H 1.09000 * 109.47506 * 59.99519 * 5 3 2 33 33 H 1.08998 * 110.36089 * 332.63143 * 7 6 5 34 34 H 1.09002 * 110.35899 * 94.93196 * 7 6 5 35 35 H 1.09002 * 111.00234 * 278.31473 * 8 7 6 36 36 H 1.09003 * 111.00187 * 154.47202 * 8 7 6 37 37 H 1.08996 * 109.91525 * 243.05415 * 10 6 5 38 38 H 1.08996 * 109.91634 * 4.15401 * 10 6 5 39 39 H 1.09003 * 109.38424 * 44.99838 * 11 9 8 40 40 H 1.08999 * 109.39349 * 164.69425 * 11 9 8 41 41 H 1.09006 * 109.46883 * 30.01534 * 13 12 11 42 42 H 1.08996 * 109.47289 * 150.01301 * 13 12 11 43 43 H 1.09006 * 109.46602 * 299.99377 * 14 13 12 44 44 H 1.08998 * 109.47507 * 59.98974 * 14 13 12 45 45 H 0.96996 * 120.00577 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.39315 * 223.23575 * 25 23 12 47 47 H 1.08999 * 109.32481 * 103.46924 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 7 4.1356 2.5520 0.0002 7 6 3.8495 3.2161 -1.2901 8 6 5.0439 4.1783 -1.5159 9 6 6.2182 3.3556 -0.9417 10 6 5.5916 2.5982 0.2390 11 6 7.3276 4.2808 -0.4628 12 7 8.0587 4.8189 -1.6093 13 6 8.8993 6.0034 -1.4176 14 6 8.0691 7.2639 -1.6682 15 6 8.9336 8.4823 -1.4705 16 1 9.9713 8.3690 -1.1933 17 6 8.3998 9.7417 -1.6433 18 7 7.1364 9.8798 -1.9812 19 14 9.4712 11.2521 -1.3975 20 1 10.8445 10.8291 -1.0227 21 1 9.5207 12.0345 -2.6586 22 1 8.9001 12.0932 -0.3151 23 6 7.9877 4.2690 -2.8275 24 8 8.6601 4.7421 -3.7191 25 6 7.1094 3.0892 -3.1357 26 8 6.7103 2.4478 -1.9207 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8401 0.0004 31 1 4.0096 0.6531 0.8891 32 1 4.0089 0.6534 -0.8908 33 1 3.7987 2.4800 -2.0924 34 1 2.9169 3.7770 -1.2294 35 1 4.9084 5.1062 -0.9602 36 1 5.1892 4.3782 -2.5775 37 1 5.7986 3.1255 1.1702 38 1 5.9919 1.5856 0.2888 39 1 6.8929 5.1021 0.1070 40 1 8.0137 3.7234 0.1748 41 1 9.2809 6.0167 -0.3966 42 1 9.7345 5.9732 -2.1173 43 1 7.6875 7.2505 -2.6892 44 1 7.2338 7.2939 -0.9686 45 1 6.7607 10.7658 -2.1025 46 1 7.6592 2.3807 -3.7553 47 1 6.2241 3.4291 -3.6731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274075730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:29 Heat of formation + Delta-G solvation = -91.503097 kcal Electronic energy + Delta-G solvation = -28760.122927 eV Core-core repulsion = 24750.615983 eV Total energy + Delta-G solvation = -4009.506944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15570 -39.92722 -38.62563 -36.62320 -35.46691 -34.81756 -33.11338 -32.09408 -30.21492 -29.90083 -28.44882 -27.40531 -26.14151 -24.71313 -24.51053 -21.85942 -21.62518 -20.68315 -20.45407 -18.42210 -17.96889 -17.24919 -16.77310 -16.60663 -16.10821 -15.85142 -15.77681 -15.26863 -15.16315 -14.60025 -14.54498 -14.25281 -14.06710 -13.77451 -13.36058 -13.29479 -12.96938 -12.85847 -12.70572 -12.64171 -12.56885 -12.26870 -12.01961 -11.79593 -11.45046 -11.28018 -11.21229 -11.01326 -10.90775 -10.68322 -10.21566 -10.02368 -9.91285 -9.87386 -9.45690 -9.30572 -8.99321 -8.56082 -8.36371 -8.11179 -6.01176 -4.04260 2.41894 2.76712 2.86819 3.20659 3.31882 3.39274 3.43174 3.50327 3.76110 4.25002 4.45480 4.47670 4.51976 4.56279 4.79138 4.85923 4.88620 4.98920 5.12118 5.15293 5.16845 5.22291 5.26615 5.35165 5.43042 5.44516 5.57899 5.59788 5.68480 5.84067 5.94620 6.03777 6.08322 6.10857 6.51673 6.59845 6.63971 6.69788 6.84129 6.91666 7.16354 7.57633 7.69190 7.91054 7.98124 7.99336 8.34155 8.50232 9.02105 9.59743 11.10284 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.002787 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.048890 B =10043.178891 C =10960.793180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.511 3.489 4 O -0.515 6.515 5 C 0.031 3.969 6 N -0.507 5.507 7 C 0.053 3.947 8 C -0.157 4.157 9 C 0.080 3.920 10 C 0.064 3.936 11 C 0.101 3.899 12 N -0.595 5.595 13 C 0.112 3.888 14 C 0.015 3.985 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.481 3.519 24 O -0.540 6.540 25 C 0.049 3.951 26 O -0.363 6.363 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.400 0.600 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.020 0.980 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.126 0.874 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 -24.883 5.387 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.396 5.396 3 C 0.296 3.704 4 O -0.389 6.389 5 C -0.101 4.101 6 N -0.231 5.231 7 C -0.074 4.074 8 C -0.195 4.195 9 C 0.039 3.961 10 C -0.064 4.064 11 C -0.023 4.023 12 N -0.328 5.328 13 C -0.009 4.009 14 C -0.022 4.022 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.267 3.733 24 O -0.419 6.419 25 C -0.030 4.030 26 O -0.281 6.281 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.234 0.766 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.144 0.856 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.398 -23.665 5.330 26.392 hybrid contribution 1.000 0.258 -0.577 1.183 sum -9.398 -23.407 4.753 25.667 Atomic orbital electron populations 1.21504 0.79569 1.02039 1.02398 1.45804 1.07781 1.08720 1.77293 1.20634 0.90029 0.83662 0.76059 1.90733 1.70017 1.31030 1.47131 1.22212 0.92314 0.92174 1.03386 1.63515 1.12687 1.13319 1.33539 1.23085 0.99447 0.96359 0.88484 1.23358 0.93674 0.99586 1.02866 1.22482 0.93182 0.90257 0.90183 1.22721 0.86229 1.00904 0.96584 1.21848 0.93559 0.97514 0.89402 1.47702 1.46823 1.30157 1.08106 1.21962 0.94202 0.83963 1.00738 1.19352 0.95234 0.90095 0.97565 1.21110 0.96805 0.90709 1.47259 0.92464 1.25001 0.95026 0.99166 0.95123 1.69973 1.12574 1.23013 1.47570 0.86499 0.80641 0.82885 0.77756 1.19682 1.20979 1.20996 1.20664 0.83884 0.85581 0.83134 1.90749 1.43805 1.63165 1.44135 1.22852 0.98164 0.94264 0.87747 1.87949 1.82932 1.32859 1.24401 0.90793 0.92302 0.92217 0.76647 0.87777 0.91313 0.93680 0.88691 0.88419 0.89909 0.87918 0.90777 0.88801 0.91054 0.91704 0.90517 0.96156 0.96593 0.92992 0.85595 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.70 59.85 0.64 1.15 16 2 N -0.74 -4.66 5.71 -67.08 -0.38 -5.04 16 3 C 0.51 5.01 7.63 -10.99 -0.08 4.93 16 4 O -0.52 -7.42 15.04 5.55 0.08 -7.34 16 5 C 0.03 0.25 5.05 -4.98 -0.03 0.22 16 6 N -0.51 -5.52 4.87 -232.88 -1.13 -6.66 16 7 C 0.05 0.65 5.75 -2.20 -0.01 0.63 16 8 C -0.16 -2.08 5.80 -24.90 -0.14 -2.22 16 9 C 0.08 0.97 0.83 -89.95 -0.07 0.90 16 10 C 0.06 0.62 6.22 -3.11 -0.02 0.60 16 11 C 0.10 1.40 5.21 -4.60 -0.02 1.38 16 12 N -0.60 -10.75 2.81 -174.84 -0.49 -11.24 16 13 C 0.11 2.39 5.27 -4.04 -0.02 2.37 16 14 C 0.02 0.40 5.29 -27.89 -0.15 0.26 16 15 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 19 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.48 8.87 7.39 -11.60 -0.09 8.78 16 24 O -0.54 -12.28 16.33 5.56 0.09 -12.19 16 25 C 0.05 0.66 6.36 35.80 0.23 0.89 16 26 O -0.36 -4.55 10.38 -35.23 -0.37 -4.92 16 27 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.40 1.19 8.83 -40.82 -0.36 0.83 16 31 H 0.10 0.59 8.04 -51.93 -0.42 0.17 16 32 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 33 H 0.04 0.52 7.62 -51.93 -0.40 0.12 16 34 H 0.09 1.32 7.38 -51.93 -0.38 0.93 16 35 H 0.10 1.43 7.83 -51.93 -0.41 1.02 16 36 H 0.08 1.16 5.83 -51.93 -0.30 0.86 16 37 H 0.10 0.92 7.81 -51.93 -0.41 0.51 16 38 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 39 H 0.09 1.33 7.85 -51.93 -0.41 0.93 16 40 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 41 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 42 H 0.08 1.77 7.22 -51.93 -0.37 1.39 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.09 1.10 6.53 -51.93 -0.34 0.76 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -37.12 376.70 -8.50 -45.62 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.51 Total: -0.73 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.18 Total: 6.31 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -1.27 Total: -49.36 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.19 Total: -24.45 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.12 -8.50 -45.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274075730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.883 kcal (2) G-P(sol) polarization free energy of solvation -37.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds