Wall clock time and date at job start Fri Apr 10 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00580 * 2 1 4 4 O 1.21289 * 119.99307 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00507 * 180.02562 * 3 2 1 6 6 N 1.46896 * 109.47471 * 180.02562 * 5 3 2 7 7 C 1.47907 * 110.99847 * 290.80105 * 6 5 3 8 8 C 1.55023 * 104.87195 * 213.77970 * 7 6 5 9 9 C 1.54455 * 101.59708 * 36.39355 * 8 7 6 10 10 C 1.47612 * 111.00218 * 169.99822 * 6 5 3 11 11 C 1.52185 * 110.32771 * 206.32733 * 9 8 7 12 12 N 1.46236 * 109.96429 * 284.85379 * 11 9 8 13 13 C 1.46504 * 118.80215 * 162.71994 * 12 11 9 14 14 C 1.52999 * 109.47104 * 270.02329 * 13 12 11 15 15 C 1.50697 * 109.47203 * 179.97438 * 14 13 12 16 16 H 1.08007 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00041 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00167 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47246 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47319 * 119.99733 * 19 17 15 22 22 H 1.48500 * 109.46854 * 239.99867 * 19 17 15 23 23 C 1.33845 * 122.40720 * 342.73686 * 12 11 9 24 24 O 1.21275 * 118.65469 * 182.61912 * 23 12 11 25 25 C 1.50285 * 122.69284 * 2.59930 * 23 12 11 26 26 O 1.42293 * 110.30195 * 83.80565 * 9 8 7 27 27 H 1.09002 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46813 * 59.99993 * 1 2 3 29 29 H 1.09004 * 109.47041 * 300.00120 * 1 2 3 30 30 H 0.97002 * 120.00016 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47230 * 300.00192 * 5 3 2 32 32 H 1.09000 * 109.47506 * 59.99519 * 5 3 2 33 33 H 1.08998 * 110.36089 * 332.63143 * 7 6 5 34 34 H 1.09002 * 110.35899 * 94.93196 * 7 6 5 35 35 H 1.09002 * 111.00234 * 278.31473 * 8 7 6 36 36 H 1.09003 * 111.00187 * 154.47202 * 8 7 6 37 37 H 1.08996 * 109.91525 * 243.05415 * 10 6 5 38 38 H 1.08996 * 109.91634 * 4.15401 * 10 6 5 39 39 H 1.09003 * 109.38424 * 44.99838 * 11 9 8 40 40 H 1.08999 * 109.39349 * 164.69425 * 11 9 8 41 41 H 1.09006 * 109.46883 * 30.01534 * 13 12 11 42 42 H 1.08996 * 109.47289 * 150.01301 * 13 12 11 43 43 H 1.09006 * 109.46602 * 299.99377 * 14 13 12 44 44 H 1.08998 * 109.47507 * 59.98974 * 14 13 12 45 45 H 0.96996 * 120.00577 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.39315 * 223.23575 * 25 23 12 47 47 H 1.08999 * 109.32481 * 103.46924 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 7 4.1356 2.5520 0.0002 7 6 3.8495 3.2161 -1.2901 8 6 5.0439 4.1783 -1.5159 9 6 6.2182 3.3556 -0.9417 10 6 5.5916 2.5982 0.2390 11 6 7.3276 4.2808 -0.4628 12 7 8.0587 4.8189 -1.6093 13 6 8.8993 6.0034 -1.4176 14 6 8.0691 7.2639 -1.6682 15 6 8.9336 8.4823 -1.4705 16 1 9.9713 8.3690 -1.1933 17 6 8.3998 9.7417 -1.6433 18 7 7.1364 9.8798 -1.9812 19 14 9.4712 11.2521 -1.3975 20 1 10.8445 10.8291 -1.0227 21 1 9.5207 12.0345 -2.6586 22 1 8.9001 12.0932 -0.3151 23 6 7.9877 4.2690 -2.8275 24 8 8.6601 4.7421 -3.7191 25 6 7.1094 3.0892 -3.1357 26 8 6.7103 2.4478 -1.9207 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 1.9500 -0.8401 0.0004 31 1 4.0096 0.6531 0.8891 32 1 4.0089 0.6534 -0.8908 33 1 3.7987 2.4800 -2.0924 34 1 2.9169 3.7770 -1.2294 35 1 4.9084 5.1062 -0.9602 36 1 5.1892 4.3782 -2.5775 37 1 5.7986 3.1255 1.1702 38 1 5.9919 1.5856 0.2888 39 1 6.8929 5.1021 0.1070 40 1 8.0137 3.7234 0.1748 41 1 9.2809 6.0167 -0.3966 42 1 9.7345 5.9732 -2.1173 43 1 7.6875 7.2505 -2.6892 44 1 7.2338 7.2939 -0.9686 45 1 6.7607 10.7658 -2.1025 46 1 7.6592 2.3807 -3.7553 47 1 6.2241 3.4291 -3.6731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274075730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:28 Heat of formation + Delta-G solvation = -122.185819 kcal Electronic energy + Delta-G solvation = -28761.453429 eV Core-core repulsion = 24750.615983 eV Total energy + Delta-G solvation = -4010.837447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30179 -40.80461 -39.80814 -37.63056 -37.03870 -35.49891 -35.14981 -33.16644 -31.92898 -31.03778 -29.21344 -28.78094 -27.06500 -26.36183 -25.56538 -23.53494 -22.60283 -21.83368 -21.35787 -19.70215 -18.99072 -18.70346 -18.15396 -17.68380 -17.40514 -16.94116 -16.67146 -16.50549 -16.27867 -16.19903 -15.69284 -15.34165 -15.09987 -14.83370 -14.58722 -14.43978 -14.29009 -14.16079 -14.02770 -13.74221 -13.58705 -13.42826 -13.04886 -12.94647 -12.89563 -12.72925 -12.58479 -12.35052 -12.27213 -12.12618 -11.90995 -11.82713 -11.44970 -11.31018 -10.82705 -10.61803 -10.44892 -10.07054 -9.69017 -9.34526 -8.24762 -6.37189 1.37615 1.39124 1.43689 1.52666 1.71655 1.86274 2.17351 2.38335 2.45644 2.97695 3.08921 3.17731 3.45371 3.51571 3.70248 3.93767 4.06534 4.11839 4.15993 4.27504 4.32874 4.41350 4.44818 4.49118 4.49905 4.53064 4.54294 4.65339 4.68887 4.73976 4.87337 4.89259 4.96377 4.98094 5.04315 5.14242 5.42220 5.51155 5.53194 5.69240 5.77891 5.85732 5.92872 6.14175 6.40579 6.65939 6.77891 7.03138 7.32466 7.37815 8.87497 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.002787 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.048890 B =10043.178891 C =10960.793180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.726 5.726 3 C 0.504 3.496 4 O -0.573 6.573 5 C 0.032 3.968 6 N -0.524 5.524 7 C 0.066 3.934 8 C -0.160 4.160 9 C 0.086 3.914 10 C 0.072 3.928 11 C 0.095 3.905 12 N -0.598 5.598 13 C 0.127 3.873 14 C 0.029 3.971 15 C -0.542 4.542 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.932 5.932 19 Si 0.970 3.030 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.274 1.274 23 C 0.471 3.529 24 O -0.593 6.593 25 C 0.061 3.939 26 O -0.349 6.349 27 H 0.111 0.889 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.420 0.580 31 H 0.137 0.863 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.057 0.943 43 H -0.027 1.027 44 H -0.001 1.001 45 H 0.264 0.736 46 H 0.153 0.847 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -27.519 6.914 29.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.380 5.380 3 C 0.291 3.709 4 O -0.451 6.451 5 C -0.099 4.099 6 N -0.249 5.249 7 C -0.061 4.061 8 C -0.198 4.198 9 C 0.045 3.955 10 C -0.056 4.056 11 C -0.028 4.028 12 N -0.329 5.329 13 C 0.005 3.995 14 C -0.009 4.009 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.572 5.572 19 Si 0.794 3.206 20 H -0.182 1.182 21 H -0.208 1.208 22 H -0.199 1.199 23 C 0.259 3.741 24 O -0.475 6.475 25 C -0.018 4.018 26 O -0.267 6.267 27 H 0.129 0.871 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.256 0.744 31 H 0.155 0.845 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.075 0.925 43 H -0.009 1.009 44 H 0.018 0.982 45 H 0.073 0.927 46 H 0.171 0.829 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.538 -26.396 6.896 28.901 hybrid contribution 0.640 1.037 -1.047 1.607 sum -8.898 -25.359 5.848 27.504 Atomic orbital electron populations 1.21597 0.79268 1.03998 1.00990 1.45717 1.08110 1.08732 1.75432 1.21090 0.90989 0.83646 0.75224 1.90721 1.71168 1.33144 1.50079 1.22347 0.90889 0.90835 1.05821 1.63426 1.13465 1.15394 1.32566 1.22836 0.97464 0.96094 0.89723 1.23290 0.95466 0.99338 1.01718 1.22513 0.91856 0.90164 0.90970 1.22776 0.85228 1.02226 0.95359 1.22158 0.94447 0.97922 0.88265 1.47761 1.46568 1.29020 1.09569 1.21511 0.93156 0.83412 1.01452 1.19136 0.95120 0.92554 0.94119 1.21562 0.97450 0.91801 1.47248 0.91630 1.26020 0.96433 1.02865 0.94549 1.70116 1.14597 1.24029 1.48472 0.85324 0.79127 0.78323 0.77818 1.18228 1.20769 1.19919 1.21649 0.83586 0.86471 0.82351 1.90716 1.46075 1.65061 1.45624 1.22827 0.97646 0.92799 0.88507 1.87978 1.82569 1.32195 1.23974 0.87094 0.93841 0.93599 0.74365 0.84520 0.89282 0.92744 0.91347 0.90784 0.91292 0.86867 0.87852 0.89527 0.87836 0.89178 0.92462 1.00869 0.98218 0.92742 0.82943 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 10.70 127.77 1.37 2.23 16 2 N -0.73 -7.45 5.71 -484.52 -2.77 -10.22 16 3 C 0.50 9.12 7.63 87.65 0.67 9.79 16 4 O -0.57 -16.73 15.04 -3.06 -0.05 -16.78 16 5 C 0.03 0.41 5.05 85.55 0.43 0.84 16 6 N -0.52 -10.40 4.87 -890.69 -4.34 -14.74 16 7 C 0.07 1.60 5.75 86.80 0.50 2.09 16 8 C -0.16 -4.32 5.80 31.78 0.18 -4.14 16 9 C 0.09 1.93 0.83 -10.36 -0.01 1.92 16 10 C 0.07 1.16 6.22 86.38 0.54 1.70 16 11 C 0.09 2.50 5.21 86.16 0.45 2.95 16 12 N -0.60 -21.68 2.81 -825.97 -2.32 -24.00 16 13 C 0.13 5.54 5.27 86.38 0.45 5.99 16 14 C 0.03 1.58 5.29 29.85 0.16 1.74 16 15 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 16 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 17 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 18 N -0.93 -58.47 13.29 21.45 0.28 -58.19 16 19 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.47 17.51 7.39 87.67 0.65 18.15 16 24 O -0.59 -27.90 16.33 -3.01 -0.05 -27.95 16 25 C 0.06 1.56 6.36 71.11 0.45 2.02 16 26 O -0.35 -7.72 10.38 -148.98 -1.55 -9.27 16 27 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.42 1.01 8.83 -92.71 -0.82 0.19 16 31 H 0.14 0.89 8.04 -2.39 -0.02 0.87 16 32 H 0.09 0.84 7.85 -2.39 -0.02 0.82 16 33 H 0.05 1.18 7.62 -2.39 -0.02 1.17 16 34 H 0.07 2.01 7.38 -2.39 -0.02 2.00 16 35 H 0.07 2.33 7.83 -2.39 -0.02 2.31 16 36 H 0.07 2.02 5.83 -2.39 -0.01 2.00 16 37 H 0.11 1.65 7.81 -2.39 -0.02 1.63 16 38 H 0.10 1.13 7.48 -2.39 -0.02 1.11 16 39 H 0.09 2.44 7.85 -2.39 -0.02 2.42 16 40 H 0.10 2.13 8.13 -2.39 -0.02 2.11 16 41 H 0.09 3.45 8.04 -2.38 -0.02 3.43 16 42 H 0.06 2.72 7.22 -2.39 -0.02 2.71 16 43 H -0.03 -1.73 8.14 -2.38 -0.02 -1.75 16 44 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.10 2.37 6.53 -2.39 -0.02 2.35 16 Total: -1.00 -85.85 376.70 -2.06 -87.91 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.16 Total: 11.58 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 6.54 Total: 14.27 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -9.14 Total: -107.14 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -1.64 Total: -54.00 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -85.85 -2.06 -87.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274075730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.277 kcal (2) G-P(sol) polarization free energy of solvation -85.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds