Wall clock time and date at job start Fri Apr 10 2020 18:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34767 * 120.00088 * 2 1 4 4 O 1.21285 * 120.00136 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00300 * 180.02562 * 3 2 1 6 6 N 1.46898 * 109.47179 * 180.02562 * 5 3 2 7 7 C 1.48578 * 110.99702 * 287.41262 * 6 5 3 8 8 C 1.55048 * 103.28525 * 200.55946 * 7 6 5 9 9 C 1.54121 * 102.80861 * 37.02441 * 8 7 6 10 10 C 1.48041 * 110.99723 * 170.00226 * 6 5 3 11 11 C 1.52435 * 110.11583 * 97.56102 * 9 8 7 12 12 N 1.46194 * 109.87503 * 169.18982 * 11 9 8 13 13 C 1.46501 * 118.77725 * 162.51958 * 12 11 9 14 14 C 1.52990 * 109.47054 * 89.99794 * 13 12 11 15 15 C 1.50699 * 109.47080 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99935 * 0.02562 * 15 14 13 17 17 C 1.37885 * 120.00089 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99821 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47065 * 60.00154 * 19 17 15 21 21 H 1.48499 * 109.46955 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47060 * 299.99970 * 19 17 15 23 23 C 1.33849 * 122.45089 * 342.49686 * 12 11 9 24 24 O 1.21278 * 118.70231 * 182.39368 * 23 12 11 25 25 C 1.50300 * 122.60334 * 2.42593 * 23 12 11 26 26 O 1.42361 * 109.93781 * 219.20892 * 9 8 7 27 27 H 1.09004 * 109.47417 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47004 * 299.99611 * 1 2 3 29 29 H 1.09002 * 109.47626 * 59.99778 * 1 2 3 30 30 H 0.97000 * 119.99344 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47005 * 60.00232 * 5 3 2 32 32 H 1.08994 * 109.46865 * 300.00494 * 5 3 2 33 33 H 1.08998 * 110.65822 * 319.00605 * 7 6 5 34 34 H 1.09003 * 110.65605 * 81.94908 * 7 6 5 35 35 H 1.08995 * 110.74729 * 278.69638 * 8 7 6 36 36 H 1.08997 * 110.74566 * 155.34772 * 8 7 6 37 37 H 1.08999 * 109.98001 * 26.39048 * 10 6 5 38 38 H 1.09003 * 109.97431 * 265.10789 * 10 6 5 39 39 H 1.09002 * 109.39085 * 49.09080 * 11 9 8 40 40 H 1.09000 * 109.38649 * 289.28737 * 11 9 8 41 41 H 1.08999 * 109.46999 * 210.00521 * 13 12 11 42 42 H 1.09000 * 109.46853 * 329.99857 * 13 12 11 43 43 H 1.08999 * 109.47811 * 300.00229 * 14 13 12 44 44 H 1.09000 * 109.47240 * 60.00300 * 14 13 12 45 45 H 0.96999 * 120.00176 * 179.97438 * 18 17 15 46 46 H 1.08998 * 109.40266 * 103.68102 * 25 23 12 47 47 H 1.09002 * 109.39846 * 223.50742 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 7 4.1355 2.5521 0.0002 7 6 3.9211 3.1933 -1.3229 8 6 4.9290 4.3715 -1.3154 9 6 6.1443 3.7767 -0.5774 10 6 5.5957 2.5984 0.2396 11 6 7.1817 3.2903 -1.5828 12 7 8.4292 2.9669 -0.8927 13 6 9.4179 2.1306 -1.5779 14 6 10.3757 3.0205 -2.3724 15 6 11.3931 2.1603 -3.0766 16 1 11.3596 1.0863 -2.9687 17 6 12.3668 2.7445 -3.8588 18 7 12.4079 4.0524 -3.9899 19 14 13.6275 1.6782 -4.7324 20 1 12.9326 0.7488 -5.6591 21 1 14.5580 2.5420 -5.5025 22 1 14.3942 0.8961 -3.7296 23 6 8.7021 3.4067 0.3416 24 8 9.7767 3.1337 0.8330 25 6 7.7290 4.2249 1.1433 26 8 6.7152 4.7552 0.2848 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.9499 -0.8401 -0.0004 31 1 4.0089 0.6536 -0.8909 32 1 4.0095 0.6531 0.8891 33 1 4.1499 2.4967 -2.1294 34 1 2.8983 3.5596 -1.4114 35 1 4.5239 5.2227 -0.7684 36 1 5.1969 4.6568 -2.3327 37 1 6.0572 1.6684 -0.0922 38 1 5.7944 2.7557 1.2997 39 1 7.3674 4.0729 -2.3185 40 1 6.8064 2.4004 -2.0881 41 1 9.9810 1.5568 -0.8418 42 1 8.9078 1.4481 -2.2576 43 1 9.8126 3.5943 -3.1084 44 1 10.8858 3.7030 -1.6926 45 1 13.0931 4.4635 -4.5398 46 1 7.2666 3.5954 1.9035 47 1 8.2584 5.0462 1.6264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274075731.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:31 Heat of formation + Delta-G solvation = -90.932189 kcal Electronic energy + Delta-G solvation = -28647.314962 eV Core-core repulsion = 24637.832775 eV Total energy + Delta-G solvation = -4009.482188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18051 -39.97944 -38.63965 -36.77575 -35.45112 -34.88648 -33.12976 -32.43371 -30.24411 -28.99754 -28.93470 -27.46245 -26.31079 -24.77788 -24.54015 -21.99813 -21.67880 -20.76244 -20.48167 -18.54253 -17.69787 -17.43723 -16.88741 -16.56232 -16.10434 -15.97693 -15.78644 -15.38266 -15.15386 -14.73365 -14.49510 -14.36256 -14.22067 -13.75780 -13.59881 -13.23155 -13.06439 -12.80760 -12.69374 -12.55225 -12.47451 -12.22474 -12.15577 -11.77999 -11.65352 -11.54966 -11.34187 -10.98050 -10.88365 -10.68571 -10.30699 -10.12037 -9.92004 -9.86507 -9.52305 -9.34581 -9.00082 -8.73578 -8.37026 -8.14608 -6.01968 -4.05629 2.33272 2.69086 2.87702 3.15421 3.31882 3.36630 3.38995 3.57524 3.67424 4.23594 4.31792 4.37202 4.44934 4.51431 4.74986 4.81290 4.83168 4.90356 4.96020 5.06676 5.10182 5.12537 5.23974 5.33851 5.38537 5.40388 5.47667 5.51070 5.64583 5.72489 5.85526 5.91241 5.99128 6.02651 6.44078 6.44882 6.48982 6.69877 6.82028 6.92762 7.09002 7.56828 7.68547 7.89472 7.90937 7.97713 8.32778 8.48752 9.00607 9.58046 11.09421 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.002708 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.386567 B =10338.407347 C =11059.241371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.741 5.741 3 C 0.514 3.486 4 O -0.517 6.517 5 C 0.024 3.976 6 N -0.491 5.491 7 C 0.036 3.964 8 C -0.105 4.105 9 C 0.094 3.906 10 C 0.011 3.989 11 C 0.098 3.902 12 N -0.598 5.598 13 C 0.114 3.886 14 C 0.015 3.985 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.480 3.520 24 O -0.537 6.537 25 C 0.046 3.954 26 O -0.351 6.351 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.401 0.599 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.015 0.985 44 H 0.023 0.977 45 H 0.262 0.738 46 H 0.087 0.913 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.035 -7.304 7.503 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.395 5.395 3 C 0.299 3.701 4 O -0.391 6.391 5 C -0.108 4.108 6 N -0.216 5.216 7 C -0.091 4.091 8 C -0.143 4.143 9 C 0.053 3.947 10 C -0.117 4.117 11 C -0.026 4.026 12 N -0.331 5.331 13 C -0.007 4.007 14 C -0.023 4.023 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C 0.267 3.733 24 O -0.415 6.415 25 C -0.033 4.033 26 O -0.269 6.269 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.235 0.765 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.178 -6.054 8.090 26.204 hybrid contribution 1.498 -1.752 -1.194 2.596 sum -22.680 -7.806 6.896 24.957 Atomic orbital electron populations 1.21512 0.79475 1.02148 1.02372 1.45806 1.07851 1.08750 1.77087 1.20536 0.89840 0.83683 0.76024 1.90714 1.69988 1.31029 1.47362 1.22194 0.92666 0.92300 1.03600 1.64592 1.12859 1.13899 1.30246 1.23417 1.01313 0.95419 0.89000 1.22476 0.92114 0.98925 1.00796 1.22230 0.93170 0.89071 0.90190 1.23556 0.87890 0.98187 1.02044 1.22070 0.83795 1.01581 0.95124 1.47722 1.18746 1.51328 1.15317 1.21951 0.89757 0.93364 0.95584 1.19342 0.93311 0.95175 0.94486 1.21034 1.12987 0.93105 1.28974 0.92639 1.25006 0.97682 0.94960 0.96643 1.69962 1.34495 1.09124 1.39512 0.86614 0.81258 0.80214 0.79644 1.20241 1.21245 1.20153 1.20752 0.88754 0.81329 0.82513 1.90758 1.23843 1.57529 1.69327 1.22886 0.88050 0.99676 0.92697 1.88105 1.53050 1.33615 1.52151 0.90716 0.92211 0.92258 0.76540 0.91278 0.87710 0.93454 0.88172 0.88556 0.89306 0.92244 0.88929 0.90089 0.90127 0.90658 0.91935 0.96676 0.95900 0.92862 0.89561 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.70 59.85 0.64 1.10 16 2 N -0.74 -4.35 5.71 -67.07 -0.38 -4.74 16 3 C 0.51 4.70 7.66 -10.99 -0.08 4.61 16 4 O -0.52 -6.86 15.06 5.55 0.08 -6.78 16 5 C 0.02 0.19 5.20 -4.97 -0.03 0.16 16 6 N -0.49 -5.06 4.91 -231.97 -1.14 -6.20 16 7 C 0.04 0.35 5.94 -1.81 -0.01 0.34 16 8 C -0.10 -1.08 6.34 -25.06 -0.16 -1.24 16 9 C 0.09 1.14 0.96 -90.05 -0.09 1.05 16 10 C 0.01 0.12 5.41 -2.93 -0.02 0.10 16 11 C 0.10 1.36 5.12 -4.50 -0.02 1.34 16 12 N -0.60 -10.66 2.80 -174.72 -0.49 -11.15 16 13 C 0.11 2.39 5.22 -4.05 -0.02 2.37 16 14 C 0.01 0.39 5.29 -27.89 -0.15 0.24 16 15 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 19 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.48 8.79 7.43 -11.59 -0.09 8.70 16 24 O -0.54 -12.12 16.38 5.56 0.09 -12.03 16 25 C 0.05 0.63 6.42 35.81 0.23 0.86 16 26 O -0.35 -4.87 10.34 -35.23 -0.36 -5.24 16 27 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.40 1.15 8.83 -40.82 -0.36 0.79 16 31 H 0.07 0.43 7.83 -51.93 -0.41 0.02 16 32 H 0.10 0.64 8.08 -51.93 -0.42 0.23 16 33 H 0.05 0.41 7.81 -51.93 -0.41 0.00 16 34 H 0.10 1.09 7.10 -51.93 -0.37 0.72 16 35 H 0.10 1.05 8.07 -51.93 -0.42 0.63 16 36 H 0.09 0.81 7.69 -51.93 -0.40 0.41 16 37 H 0.06 0.61 7.23 -51.93 -0.38 0.23 16 38 H 0.09 1.00 6.08 -51.93 -0.32 0.68 16 39 H 0.08 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.08 0.96 7.83 -51.93 -0.41 0.55 16 41 H 0.08 1.69 7.30 -51.93 -0.38 1.31 16 42 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.09 0.98 6.48 -51.93 -0.34 0.64 16 47 H 0.13 1.65 8.14 -51.93 -0.42 1.22 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -37.34 376.71 -8.50 -45.84 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.49 Total: -1.70 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.20 Total: 6.06 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -1.28 Total: -48.59 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.19 Total: -24.04 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.34 -8.50 -45.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274075731.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.093 kcal (2) G-P(sol) polarization free energy of solvation -37.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds