Wall clock time and date at job start Fri Apr 10 2020 18:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41609 * 113.99667 * 2 1 4 4 C 1.46503 * 119.99899 * 276.11949 * 3 2 1 5 5 C 1.34776 * 119.99675 * 96.11966 * 3 2 1 6 6 O 1.21592 * 119.99451 * 185.78135 * 5 3 2 7 7 N 1.34770 * 120.00575 * 5.78070 * 5 3 2 8 8 C 1.47140 * 125.60460 * 355.24343 * 7 5 3 9 9 C 1.54584 * 107.32755 * 179.02229 * 8 7 5 10 10 C 1.53704 * 102.78618 * 339.11733 * 9 8 7 11 11 C 1.53205 * 111.54811 * 153.97520 * 10 9 8 12 12 C 1.54795 * 101.39315 * 98.90136 * 11 10 9 13 13 N 1.46930 * 105.54330 * 24.15753 * 12 11 10 14 14 C 1.46503 * 124.37809 * 163.25644 * 13 12 11 15 15 C 1.53001 * 109.47118 * 89.99951 * 14 13 12 16 16 C 1.50700 * 109.47154 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99630 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99921 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00063 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99802 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46915 * 90.00210 * 20 18 16 22 22 H 1.48490 * 109.47251 * 210.00363 * 20 18 16 23 23 H 1.48501 * 109.47030 * 330.00584 * 20 18 16 24 24 C 1.34890 * 111.24328 * 343.25559 * 13 12 11 25 25 O 1.21280 * 125.21990 * 181.28778 * 24 13 12 26 26 C 1.47699 * 125.61200 * 175.19842 * 7 5 3 27 27 H 1.09007 * 109.46782 * 175.28073 * 1 2 3 28 28 H 1.08996 * 109.47074 * 295.27941 * 1 2 3 29 29 H 1.08995 * 109.47261 * 55.28131 * 1 2 3 30 30 H 1.08997 * 109.46661 * 270.00252 * 4 3 2 31 31 H 1.08994 * 109.46947 * 29.99749 * 4 3 2 32 32 H 1.08997 * 109.47022 * 150.00100 * 4 3 2 33 33 H 1.09000 * 109.86876 * 298.45615 * 8 7 5 34 34 H 1.08994 * 109.88004 * 59.58499 * 8 7 5 35 35 H 1.08998 * 110.74777 * 220.78902 * 9 8 7 36 36 H 1.09010 * 110.74940 * 97.44321 * 9 8 7 37 37 H 1.08996 * 111.03799 * 216.93220 * 11 10 9 38 38 H 1.09000 * 111.03787 * 340.83353 * 11 10 9 39 39 H 1.08995 * 110.23647 * 143.17891 * 12 11 10 40 40 H 1.09008 * 110.23409 * 265.05947 * 12 11 10 41 41 H 1.08997 * 109.46928 * 209.99978 * 14 13 12 42 42 H 1.09000 * 109.46679 * 329.99909 * 14 13 12 43 43 H 1.09000 * 109.47464 * 300.00311 * 15 14 13 44 44 H 1.08999 * 109.46762 * 59.99960 * 15 14 13 45 45 H 0.96998 * 119.99811 * 179.97438 * 19 18 16 46 46 H 1.08994 * 110.39406 * 83.83153 * 26 7 5 47 47 H 1.08999 * 110.48679 * 321.49549 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.1792 2.0179 -1.2615 5 6 2.3926 1.8587 1.1606 6 8 2.7891 3.0080 1.1745 7 7 2.3408 1.1498 2.3056 8 6 1.7927 -0.2082 2.4484 9 6 1.9678 -0.6223 3.9274 10 6 3.0819 0.3180 4.4143 11 6 2.9982 0.5544 5.9257 12 6 4.0635 -0.4388 6.4500 13 7 4.9905 -0.6496 5.3297 14 6 6.3307 -1.2262 5.4623 15 6 6.2501 -2.7459 5.3039 16 6 7.6288 -3.3389 5.4396 17 1 8.4776 -2.6962 5.6212 18 6 7.8064 -4.7021 5.3330 19 7 6.7728 -5.4846 5.1124 20 14 9.5156 -5.4371 5.5006 21 1 9.7759 -5.7649 6.9254 22 1 9.6047 -6.6740 4.6838 23 1 10.5248 -4.4566 5.0259 24 6 4.4479 -0.2436 4.1634 25 8 4.9836 -0.3218 3.0781 26 6 2.8257 1.6079 3.6234 27 1 -0.3633 -1.0243 -0.0846 28 1 -0.3633 0.4388 0.9292 29 1 -0.3633 0.5853 -0.8446 30 1 3.1559 1.7819 -1.6839 31 1 1.3990 1.7204 -1.9620 32 1 2.1125 3.0901 -1.0772 33 1 0.7349 -0.2103 2.1857 34 1 2.3378 -0.8976 1.8036 35 1 2.2810 -1.6636 4.0024 36 1 1.0478 -0.4533 4.4872 37 1 3.2637 1.5814 6.1763 38 1 2.0080 0.3044 6.3066 39 1 4.5922 -0.0099 7.3012 40 1 3.5935 -1.3804 6.7343 41 1 6.9813 -0.8145 4.6908 42 1 6.7346 -0.9843 6.4454 43 1 5.5994 -3.1576 6.0753 44 1 5.8461 -2.9877 4.3208 45 1 6.8978 -6.4436 5.0371 46 1 2.0659 2.2124 4.1186 47 1 3.7496 2.1758 3.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274276173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:39 Heat of formation + Delta-G solvation = -35.267517 kcal Electronic energy + Delta-G solvation = -29215.460649 eV Core-core repulsion = 25208.392263 eV Total energy + Delta-G solvation = -4007.068386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17664 -39.82318 -37.55846 -37.07487 -35.98854 -33.85395 -33.09093 -32.40923 -30.47199 -29.34469 -28.27260 -27.58402 -26.25071 -25.11906 -23.77374 -22.84839 -21.92319 -20.48979 -20.30687 -18.72170 -18.39530 -16.84420 -16.65909 -16.46094 -15.78166 -15.76640 -15.37462 -15.30495 -15.11095 -14.75203 -14.47129 -14.17984 -13.74168 -13.42008 -13.18149 -13.13881 -12.93189 -12.77735 -12.63302 -12.55120 -12.29961 -12.17018 -12.12635 -11.97390 -11.51546 -11.32059 -11.03732 -10.96424 -10.93771 -10.71253 -10.64134 -10.15485 -9.98794 -9.85400 -9.33786 -9.24048 -9.07830 -8.50988 -8.37424 -8.00688 -6.02676 -4.05916 1.66149 2.79540 2.96438 3.18155 3.31304 3.37554 3.41141 3.53211 4.21085 4.33528 4.36491 4.45674 4.53840 4.79362 4.85131 4.87349 4.99144 5.05681 5.12690 5.22319 5.24027 5.29646 5.33715 5.37565 5.48464 5.56890 5.59746 5.66864 5.69006 5.78408 5.82552 5.98360 6.06379 6.07687 6.16728 6.27669 6.46992 6.80990 6.83580 7.01030 7.49909 7.66385 7.78812 7.84758 7.97176 8.33736 8.36331 8.68790 9.00731 9.58194 11.08754 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003132 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.821839 B = 8937.287246 C = 9612.054607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.139 6.139 3 N -0.498 5.498 4 C 0.106 3.894 5 C 0.739 3.261 6 O -0.577 6.577 7 N -0.618 5.618 8 C 0.111 3.889 9 C -0.110 4.110 10 C -0.115 4.115 11 C -0.117 4.117 12 C 0.103 3.897 13 N -0.613 5.613 14 C 0.129 3.871 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.527 3.473 25 O -0.515 6.515 26 C 0.154 3.846 27 H 0.107 0.893 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.017 0.983 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.076 0.924 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.076 13.453 -3.682 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 O -0.143 6.143 3 N -0.282 5.282 4 C -0.035 4.035 5 C 0.443 3.557 6 O -0.456 6.456 7 N -0.354 5.354 8 C -0.011 4.011 9 C -0.148 4.148 10 C -0.119 4.119 11 C -0.155 4.155 12 C -0.021 4.021 13 N -0.346 5.346 14 C 0.009 3.991 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C 0.312 3.688 25 O -0.390 6.390 26 C 0.031 3.969 27 H 0.125 0.875 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.393 13.696 -4.356 22.562 hybrid contribution 0.534 -0.842 0.106 1.003 sum -16.858 12.854 -4.250 21.621 Atomic orbital electron populations 1.23469 0.82397 1.03866 1.01187 1.90766 1.19560 1.07371 1.96592 1.49005 1.62206 1.10521 1.06434 1.21749 1.02111 0.96788 0.82846 1.15177 0.78544 0.83287 0.78690 1.90957 1.55232 1.15459 1.83926 1.47360 1.63770 1.17094 1.07181 1.22270 0.98358 0.83718 0.96786 1.22495 0.97080 1.00213 0.95059 1.21619 0.96123 0.97205 0.96951 1.22472 1.00394 1.00577 0.92063 1.22086 0.90802 0.98990 0.90209 1.48672 1.17014 1.61512 1.07424 1.21803 0.79207 0.97149 1.00959 1.19398 0.97434 0.88000 0.97697 1.21093 0.93287 0.92123 1.49599 0.92497 1.24994 0.96906 0.97264 0.95078 1.69969 1.29727 1.04288 1.49195 0.86553 0.84529 0.78729 0.77964 1.20639 1.21173 1.19772 1.19881 0.86310 0.78310 0.84284 1.90735 1.66843 1.55993 1.25429 1.21730 1.00033 0.94302 0.80869 0.87485 0.92959 0.92799 0.91793 0.90863 0.89362 0.91665 0.90070 0.89138 0.89474 0.89654 0.88891 0.90466 0.90929 0.91208 0.91613 0.96493 0.96135 0.92955 0.90589 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 10.35 101.05 1.05 0.96 16 2 O -0.14 -1.65 8.40 -11.47 -0.10 -1.74 16 3 N -0.50 -6.61 3.36 -72.07 -0.24 -6.85 16 4 C 0.11 1.06 10.82 59.85 0.65 1.71 16 5 C 0.74 11.74 8.45 -86.92 -0.73 11.00 16 6 O -0.58 -10.59 16.21 5.28 0.09 -10.51 16 7 N -0.62 -8.97 3.34 -176.67 -0.59 -9.56 16 8 C 0.11 1.39 5.30 -2.86 -0.02 1.37 16 9 C -0.11 -1.24 5.95 -25.53 -0.15 -1.39 16 10 C -0.11 -1.48 0.67 -155.38 -0.10 -1.59 16 11 C -0.12 -1.10 6.26 -25.68 -0.16 -1.26 16 12 C 0.10 1.29 7.37 -2.86 -0.02 1.27 16 13 N -0.61 -10.94 2.95 -172.56 -0.51 -11.45 16 14 C 0.13 2.73 5.88 -4.04 -0.02 2.71 16 15 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 16 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 20 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.53 9.76 6.73 -11.36 -0.08 9.69 16 25 O -0.52 -12.00 17.51 5.56 0.10 -11.90 16 26 C 0.15 2.04 5.72 -3.15 -0.02 2.02 16 27 H 0.11 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.05 0.38 6.72 -51.93 -0.35 0.03 16 29 H 0.05 0.34 8.05 -51.93 -0.42 -0.08 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 32 H 0.09 0.89 7.35 -51.93 -0.38 0.51 16 33 H 0.07 0.64 5.16 -51.93 -0.27 0.37 16 34 H 0.08 1.23 7.21 -51.93 -0.37 0.85 16 35 H 0.09 1.15 8.00 -51.93 -0.42 0.74 16 36 H 0.09 0.69 7.74 -51.92 -0.40 0.28 16 37 H 0.08 0.69 7.97 -51.93 -0.41 0.27 16 38 H 0.09 0.62 7.62 -51.93 -0.40 0.23 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 41 H 0.07 1.59 7.96 -51.93 -0.41 1.17 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 47 H 0.08 1.25 7.99 -51.93 -0.41 0.84 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -37.74 380.19 -7.56 -45.30 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.58 Total: -2.66 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -0.17 Total: 13.11 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.60 Total: -54.10 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.09 Total: -24.15 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.74 -7.56 -45.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274276173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.035 kcal (2) G-P(sol) polarization free energy of solvation -37.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds