Wall clock time and date at job start Fri Apr 10 2020 18:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41609 * 113.99667 * 2 1 4 4 C 1.46503 * 119.99899 * 276.11949 * 3 2 1 5 5 C 1.34776 * 119.99675 * 96.11966 * 3 2 1 6 6 O 1.21592 * 119.99451 * 185.78135 * 5 3 2 7 7 N 1.34770 * 120.00575 * 5.78070 * 5 3 2 8 8 C 1.47140 * 125.60460 * 355.24343 * 7 5 3 9 9 C 1.54584 * 107.32755 * 179.02229 * 8 7 5 10 10 C 1.53704 * 102.78618 * 339.11733 * 9 8 7 11 11 C 1.53205 * 111.54811 * 153.97520 * 10 9 8 12 12 C 1.54795 * 101.39315 * 98.90136 * 11 10 9 13 13 N 1.46930 * 105.54330 * 24.15753 * 12 11 10 14 14 C 1.46503 * 124.37809 * 163.25644 * 13 12 11 15 15 C 1.53001 * 109.47118 * 89.99951 * 14 13 12 16 16 C 1.50700 * 109.47154 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99630 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99921 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00063 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99802 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46915 * 90.00210 * 20 18 16 22 22 H 1.48490 * 109.47251 * 210.00363 * 20 18 16 23 23 H 1.48501 * 109.47030 * 330.00584 * 20 18 16 24 24 C 1.34890 * 111.24328 * 343.25559 * 13 12 11 25 25 O 1.21280 * 125.21990 * 181.28778 * 24 13 12 26 26 C 1.47699 * 125.61200 * 175.19842 * 7 5 3 27 27 H 1.09007 * 109.46782 * 175.28073 * 1 2 3 28 28 H 1.08996 * 109.47074 * 295.27941 * 1 2 3 29 29 H 1.08995 * 109.47261 * 55.28131 * 1 2 3 30 30 H 1.08997 * 109.46661 * 270.00252 * 4 3 2 31 31 H 1.08994 * 109.46947 * 29.99749 * 4 3 2 32 32 H 1.08997 * 109.47022 * 150.00100 * 4 3 2 33 33 H 1.09000 * 109.86876 * 298.45615 * 8 7 5 34 34 H 1.08994 * 109.88004 * 59.58499 * 8 7 5 35 35 H 1.08998 * 110.74777 * 220.78902 * 9 8 7 36 36 H 1.09010 * 110.74940 * 97.44321 * 9 8 7 37 37 H 1.08996 * 111.03799 * 216.93220 * 11 10 9 38 38 H 1.09000 * 111.03787 * 340.83353 * 11 10 9 39 39 H 1.08995 * 110.23647 * 143.17891 * 12 11 10 40 40 H 1.09008 * 110.23409 * 265.05947 * 12 11 10 41 41 H 1.08997 * 109.46928 * 209.99978 * 14 13 12 42 42 H 1.09000 * 109.46679 * 329.99909 * 14 13 12 43 43 H 1.09000 * 109.47464 * 300.00311 * 15 14 13 44 44 H 1.08999 * 109.46762 * 59.99960 * 15 14 13 45 45 H 0.96998 * 119.99811 * 179.97438 * 19 18 16 46 46 H 1.08994 * 110.39406 * 83.83153 * 26 7 5 47 47 H 1.08999 * 110.48679 * 321.49549 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.1792 2.0179 -1.2615 5 6 2.3926 1.8587 1.1606 6 8 2.7891 3.0080 1.1745 7 7 2.3408 1.1498 2.3056 8 6 1.7927 -0.2082 2.4484 9 6 1.9678 -0.6223 3.9274 10 6 3.0819 0.3180 4.4143 11 6 2.9982 0.5544 5.9257 12 6 4.0635 -0.4388 6.4500 13 7 4.9905 -0.6496 5.3297 14 6 6.3307 -1.2262 5.4623 15 6 6.2501 -2.7459 5.3039 16 6 7.6288 -3.3389 5.4396 17 1 8.4776 -2.6962 5.6212 18 6 7.8064 -4.7021 5.3330 19 7 6.7728 -5.4846 5.1124 20 14 9.5156 -5.4371 5.5006 21 1 9.7759 -5.7649 6.9254 22 1 9.6047 -6.6740 4.6838 23 1 10.5248 -4.4566 5.0259 24 6 4.4479 -0.2436 4.1634 25 8 4.9836 -0.3218 3.0781 26 6 2.8257 1.6079 3.6234 27 1 -0.3633 -1.0243 -0.0846 28 1 -0.3633 0.4388 0.9292 29 1 -0.3633 0.5853 -0.8446 30 1 3.1559 1.7819 -1.6839 31 1 1.3990 1.7204 -1.9620 32 1 2.1125 3.0901 -1.0772 33 1 0.7349 -0.2103 2.1857 34 1 2.3378 -0.8976 1.8036 35 1 2.2810 -1.6636 4.0024 36 1 1.0478 -0.4533 4.4872 37 1 3.2637 1.5814 6.1763 38 1 2.0080 0.3044 6.3066 39 1 4.5922 -0.0099 7.3012 40 1 3.5935 -1.3804 6.7343 41 1 6.9813 -0.8145 4.6908 42 1 6.7346 -0.9843 6.4454 43 1 5.5994 -3.1576 6.0753 44 1 5.8461 -2.9877 4.3208 45 1 6.8978 -6.4436 5.0371 46 1 2.0659 2.2124 4.1186 47 1 3.7496 2.1758 3.5136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274276173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:38 Heat of formation + Delta-G solvation = -62.219059 kcal Electronic energy + Delta-G solvation = -29216.629356 eV Core-core repulsion = 25208.392263 eV Total energy + Delta-G solvation = -4008.237093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33840 -40.97943 -38.53406 -38.29350 -37.46725 -35.69152 -34.09737 -34.00466 -31.88386 -30.62929 -29.47027 -28.36787 -27.28962 -26.82835 -24.94080 -23.84742 -23.57505 -21.82679 -21.39303 -20.02380 -19.46246 -18.68588 -17.87282 -17.53019 -17.19355 -16.94167 -16.70796 -16.43425 -16.34002 -16.15180 -15.64525 -15.32160 -14.83751 -14.76593 -14.49496 -14.30028 -14.22841 -14.10795 -13.91990 -13.62093 -13.48916 -13.37355 -13.15831 -13.00757 -12.86209 -12.81508 -12.60923 -12.50165 -12.05179 -11.95267 -11.91601 -11.85352 -11.53614 -11.42321 -11.15730 -10.64100 -10.58316 -10.29802 -9.57187 -9.50461 -8.25204 -6.37847 0.76171 1.37541 1.40254 1.50884 1.55189 1.71381 2.09881 2.17353 2.40563 3.08239 3.24730 3.27470 3.38329 3.70801 3.86726 3.98649 4.15754 4.28401 4.31762 4.33836 4.36804 4.39763 4.42712 4.49019 4.55389 4.59957 4.63496 4.68584 4.76810 4.77924 4.80318 4.84732 4.88481 5.04581 5.09234 5.18732 5.22882 5.32822 5.34218 5.45692 5.59866 5.81833 5.87242 6.14610 6.30519 6.74171 6.77157 7.23314 7.24260 7.32006 8.86867 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003132 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.821839 B = 8937.287246 C = 9612.054607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.158 6.158 3 N -0.502 5.502 4 C 0.102 3.898 5 C 0.725 3.275 6 O -0.614 6.614 7 N -0.625 5.625 8 C 0.113 3.887 9 C -0.103 4.103 10 C -0.106 4.106 11 C -0.097 4.097 12 C 0.091 3.909 13 N -0.620 5.620 14 C 0.142 3.858 15 C 0.027 3.973 16 C -0.547 4.547 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.266 1.266 24 C 0.508 3.492 25 O -0.580 6.580 26 C 0.153 3.847 27 H 0.131 0.869 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.092 0.908 43 H 0.004 0.996 44 H -0.030 1.030 45 H 0.265 0.735 46 H 0.118 0.882 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.054 13.989 -1.727 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 O -0.161 6.161 3 N -0.285 5.285 4 C -0.038 4.038 5 C 0.429 3.571 6 O -0.496 6.496 7 N -0.360 5.360 8 C -0.009 4.009 9 C -0.141 4.141 10 C -0.110 4.110 11 C -0.134 4.134 12 C -0.031 4.031 13 N -0.352 5.352 14 C 0.021 3.979 15 C -0.011 4.011 16 C -0.586 4.586 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.191 1.191 24 C 0.297 3.703 25 O -0.460 6.460 26 C 0.030 3.970 27 H 0.148 0.852 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.126 0.874 38 H 0.157 0.843 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.023 0.977 44 H -0.011 1.011 45 H 0.073 0.927 46 H 0.136 0.864 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.415 14.223 -2.363 24.183 hybrid contribution 1.126 -1.083 -0.562 1.661 sum -18.288 13.140 -2.925 22.709 Atomic orbital electron populations 1.23726 0.79904 1.05670 1.02110 1.90745 1.22216 1.06461 1.96723 1.49062 1.62075 1.10938 1.06434 1.21917 1.03017 0.96488 0.82356 1.15475 0.78700 0.83272 0.79629 1.90908 1.56847 1.17038 1.84786 1.47523 1.63562 1.17576 1.07381 1.22317 0.99351 0.82042 0.97217 1.22609 0.98399 0.98482 0.94615 1.21594 0.92557 0.97111 0.99779 1.22611 1.01569 1.00930 0.88294 1.22505 0.90928 1.00449 0.89171 1.48804 1.16481 1.60535 1.09391 1.21341 0.81484 0.93729 1.01394 1.19180 0.96182 0.91541 0.94214 1.21550 0.94368 0.92886 1.49759 0.91784 1.25995 1.01485 0.97774 0.94382 1.70104 1.32276 1.04738 1.49914 0.85387 0.78922 0.77682 0.78701 1.18879 1.20860 1.19067 1.21031 0.88412 0.77510 0.83370 1.90684 1.68940 1.58487 1.27885 1.21887 0.99915 0.94381 0.80824 0.85152 0.92436 0.91364 0.92503 0.87548 0.89620 0.88483 0.93912 0.91225 0.84152 0.87399 0.84288 0.88166 0.90717 0.93716 0.88930 0.97739 1.01141 0.92657 0.86423 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.22 10.35 113.37 1.17 0.95 16 2 O -0.16 -3.69 8.40 -38.80 -0.33 -4.02 16 3 N -0.50 -13.49 3.36 -500.20 -1.68 -15.17 16 4 C 0.10 2.06 10.82 127.77 1.38 3.44 16 5 C 0.73 23.58 8.45 179.06 1.51 25.10 16 6 O -0.61 -23.34 16.21 -4.01 -0.06 -23.40 16 7 N -0.62 -18.04 3.34 -831.12 -2.77 -20.81 16 8 C 0.11 2.73 5.30 86.80 0.46 3.19 16 9 C -0.10 -2.08 5.95 31.37 0.19 -1.90 16 10 C -0.11 -2.57 0.67 -52.75 -0.04 -2.61 16 11 C -0.10 -1.39 6.26 31.28 0.20 -1.20 16 12 C 0.09 2.05 7.37 86.91 0.64 2.69 16 13 N -0.62 -22.41 2.95 -818.19 -2.41 -24.83 16 14 C 0.14 6.25 5.88 86.38 0.51 6.76 16 15 C 0.03 1.48 5.30 29.85 0.16 1.63 16 16 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 17 H 0.06 3.56 7.74 -2.91 -0.02 3.53 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 20 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 C 0.51 19.55 6.73 87.36 0.59 20.13 16 25 O -0.58 -29.23 17.51 -3.03 -0.05 -29.28 16 26 C 0.15 3.85 5.72 86.30 0.49 4.35 16 27 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.06 0.69 6.72 -2.39 -0.02 0.68 16 29 H 0.07 0.70 8.05 -2.39 -0.02 0.68 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.36 8.05 -2.39 -0.02 1.34 16 32 H 0.09 1.77 7.35 -2.39 -0.02 1.75 16 33 H 0.10 1.68 5.16 -2.39 -0.01 1.67 16 34 H 0.04 1.36 7.21 -2.39 -0.02 1.34 16 35 H 0.07 1.74 8.00 -2.39 -0.02 1.72 16 36 H 0.14 1.40 7.74 -2.38 -0.02 1.38 16 37 H 0.11 1.17 7.97 -2.39 -0.02 1.15 16 38 H 0.14 0.86 7.62 -2.39 -0.02 0.85 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.04 2.16 7.96 -2.39 -0.02 2.14 16 42 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 43 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 44 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 45 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 46 H 0.12 2.00 8.04 -2.39 -0.02 1.99 16 47 H 0.05 1.56 7.99 -2.39 -0.02 1.54 16 Total: -1.00 -90.85 380.19 3.91 -86.94 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.96 Total: 9.52 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 7.96 Total: 31.38 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -6.59 Total: -118.20 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -0.44 Total: -56.70 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -90.85 3.91 -86.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274276173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.717 kcal (2) G-P(sol) polarization free energy of solvation -90.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds