Wall clock time and date at job start Fri Apr 10 2020 18:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46899 * 111.00245 * 2 1 4 4 C 1.46904 * 110.99526 * 123.94741 * 2 1 3 5 5 H 1.09001 * 109.50031 * 300.00119 * 4 2 1 6 6 C 1.53048 * 109.49543 * 179.97438 * 4 2 1 7 7 C 1.53039 * 109.53484 * 178.65087 * 6 4 2 8 8 C 1.53191 * 109.31201 * 61.36629 * 7 6 4 9 9 N 1.46922 * 108.77723 * 305.35739 * 8 7 6 10 10 C 1.34777 * 120.63569 * 233.58690 * 9 8 7 11 11 O 1.21346 * 119.99953 * 171.37695 * 10 9 8 12 12 C 1.49450 * 119.99995 * 351.38676 * 10 9 8 13 13 O 1.21352 * 119.99551 * 353.24143 * 12 10 9 14 14 N 1.34776 * 120.00037 * 173.23772 * 12 10 9 15 15 C 1.46495 * 119.99797 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47183 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46985 * 300.00337 * 16 15 14 18 18 C 1.52997 * 109.47052 * 59.99773 * 16 15 14 19 19 C 1.50700 * 109.47305 * 179.97438 * 16 15 14 20 20 H 1.07998 * 120.00174 * 0.02562 * 19 16 15 21 21 C 1.37882 * 119.99759 * 179.97438 * 19 16 15 22 22 N 1.31506 * 120.00255 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 119.99692 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47182 * 60.00597 * 23 21 19 25 25 H 1.48505 * 109.47059 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47599 * 300.00614 * 23 21 19 27 27 C 1.46929 * 118.73493 * 53.61260 * 9 8 7 28 28 H 1.09003 * 109.47705 * 296.05428 * 1 2 3 29 29 H 1.09002 * 109.47142 * 56.05115 * 1 2 3 30 30 H 1.09003 * 109.47574 * 176.04663 * 1 2 3 31 31 H 1.08999 * 109.47492 * 183.95195 * 3 2 1 32 32 H 1.09006 * 109.46575 * 303.95081 * 3 2 1 33 33 H 1.08997 * 109.47678 * 63.94675 * 3 2 1 34 34 H 1.08996 * 109.45677 * 298.66861 * 6 4 2 35 35 H 1.08997 * 109.45867 * 58.64443 * 6 4 2 36 36 H 1.09008 * 109.49682 * 181.31453 * 7 6 4 37 37 H 1.09000 * 109.50279 * 301.37830 * 7 6 4 38 38 H 1.08991 * 109.59056 * 65.15436 * 8 7 6 39 39 H 1.09005 * 109.58141 * 185.43521 * 8 7 6 40 40 H 0.96995 * 119.99480 * 0.02562 * 14 12 10 41 41 H 1.09007 * 109.47500 * 300.00223 * 15 14 12 42 42 H 1.09000 * 109.47334 * 60.00179 * 15 14 12 43 43 H 1.08999 * 109.47004 * 59.99535 * 17 16 15 44 44 H 1.09001 * 109.47064 * 179.97438 * 17 16 15 45 45 H 1.09000 * 109.46796 * 299.99566 * 17 16 15 46 46 H 1.09003 * 109.47253 * 60.00536 * 18 16 15 47 47 H 1.08997 * 109.47589 * 179.97438 * 18 16 15 48 48 H 1.09004 * 109.47630 * 300.00362 * 18 16 15 49 49 H 0.97003 * 120.00203 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.58610 * 186.60356 * 27 9 8 51 51 H 1.09000 * 109.58541 * 66.17694 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 1 1.6460 -0.3202 2.0691 6 6 3.5252 -0.7441 1.1041 7 6 4.0745 -1.5133 2.3077 8 6 3.6100 -2.9712 2.2321 9 7 2.1454 -2.9955 2.1179 10 6 1.4015 -3.7202 2.9770 11 8 0.1930 -3.6113 2.9741 12 6 2.0651 -4.6576 3.9332 13 8 3.2593 -4.8589 3.8553 14 7 1.3373 -5.2792 4.8821 15 6 1.9878 -6.1985 5.8191 16 6 0.9450 -6.7646 6.7850 17 6 0.2951 -5.6185 7.5630 18 6 -0.1274 -7.5166 5.9942 19 6 1.6139 -7.7108 7.7484 20 1 2.6767 -7.8901 7.6792 21 6 0.8693 -8.3468 8.7191 22 7 -0.4247 -8.1281 8.8039 23 14 1.6984 -9.5201 9.9129 24 1 2.7403 -8.7914 10.6802 25 1 0.6862 -10.0695 10.8505 26 1 2.3278 -10.6327 9.1571 27 6 1.5072 -2.2152 1.0490 28 1 -0.3634 0.4514 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9162 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 3.8749 -1.2118 0.1838 35 1 3.8746 0.2877 1.1426 36 1 5.1640 -1.4776 2.2960 37 1 3.7057 -1.0607 3.2281 38 1 4.0527 -3.4510 1.3594 39 1 3.9170 -3.4997 3.1347 40 1 0.3828 -5.1184 4.9441 41 1 2.4504 -7.0152 5.2649 42 1 2.7521 -5.6628 6.3822 43 1 -0.1888 -4.9346 6.8658 44 1 -0.4481 -6.0218 8.2508 45 1 1.0591 -5.0828 8.1264 46 1 0.3354 -8.3331 5.4399 47 1 -0.8701 -7.9203 6.6822 48 1 -0.6114 -6.8326 5.2970 49 1 -0.9486 -8.5758 9.4865 50 1 0.4246 -2.2444 1.1719 51 1 1.7784 -2.6334 0.0796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422483359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:38 Heat of formation + Delta-G solvation = -51.544467 kcal Electronic energy + Delta-G solvation = -28963.585766 eV Core-core repulsion = 25091.644652 eV Total energy + Delta-G solvation = -3871.941113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.89352 -39.23912 -38.05256 -36.74164 -36.06816 -33.46813 -32.60158 -30.92084 -30.54349 -28.25970 -26.70139 -25.74171 -25.52198 -25.00314 -24.72275 -22.59019 -22.06833 -20.45247 -19.70084 -18.83396 -17.64330 -17.02299 -16.10733 -15.96092 -15.66326 -15.51413 -15.24681 -15.09593 -14.82096 -14.45836 -14.31360 -14.15551 -13.71645 -13.50126 -13.24742 -12.96440 -12.92369 -12.72843 -12.53181 -12.25954 -12.14577 -11.98042 -11.68183 -11.50074 -11.41199 -11.20717 -11.16193 -10.89335 -10.78357 -10.71083 -10.66581 -10.41258 -10.21369 -9.67306 -9.45010 -9.03451 -8.86495 -8.80766 -8.72831 -8.60867 -8.38549 -6.04009 -4.15032 1.60601 2.43291 3.28661 3.33503 3.36065 3.38107 3.55495 3.76189 4.34967 4.39021 4.55914 4.69496 4.76413 4.83519 4.90745 5.04039 5.06920 5.17719 5.22565 5.25527 5.31788 5.37163 5.50899 5.56474 5.62813 5.68581 5.71818 5.73373 5.93013 6.06533 6.08109 6.20499 6.22651 6.44685 6.63816 6.65037 6.69393 6.83003 6.84192 6.92109 6.98264 7.07009 7.31084 7.53115 7.58222 7.67701 7.94075 7.98203 8.10534 8.29402 8.38390 8.84937 9.50906 10.97367 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.002440 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.250102 B =11474.314157 C =11995.920698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.541 5.541 3 C 0.022 3.978 4 C 0.071 3.929 5 H 0.046 0.954 6 C -0.116 4.116 7 C -0.134 4.134 8 C 0.068 3.932 9 N -0.585 5.585 10 C 0.509 3.491 11 O -0.523 6.523 12 C 0.498 3.502 13 O -0.526 6.526 14 N -0.677 5.677 15 C 0.127 3.873 16 C 0.056 3.944 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.508 4.508 20 H 0.058 0.942 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C 0.115 3.885 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.146 0.854 40 H 0.411 0.589 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.008 0.992 44 H 0.087 0.913 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.087 0.913 48 H 0.008 0.992 49 H 0.261 0.739 50 H 0.094 0.906 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 16.259 -16.012 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.265 5.265 3 C -0.126 4.126 4 C -0.038 4.038 5 H 0.064 0.936 6 C -0.154 4.154 7 C -0.173 4.173 8 C -0.053 4.053 9 N -0.319 5.319 10 C 0.292 3.708 11 O -0.399 6.399 12 C 0.279 3.721 13 O -0.406 6.406 14 N -0.327 5.327 15 C 0.005 3.995 16 C 0.056 3.944 17 C -0.192 4.192 18 C -0.192 4.192 19 C -0.547 4.547 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.723 3.277 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.008 4.008 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.163 0.837 40 H 0.249 0.751 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.027 0.973 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.106 0.894 48 H 0.027 0.973 49 H 0.071 0.929 50 H 0.112 0.888 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.807 15.854 -16.348 23.274 hybrid contribution -0.313 -0.008 1.284 1.322 sum 4.494 15.846 -15.064 22.320 Atomic orbital electron populations 1.22476 0.87052 1.02797 1.00686 1.61979 1.08114 1.13853 1.42546 1.22439 1.01190 0.88479 1.00523 1.21989 0.95822 0.93899 0.92075 0.93567 1.21695 0.93585 1.00844 0.99284 1.21964 1.01213 0.95785 0.98339 1.22913 0.77839 0.97149 1.07442 1.47876 1.08218 1.45706 1.30124 1.20420 0.87042 0.81525 0.81766 1.90737 1.13907 1.65777 1.69464 1.19953 0.87154 0.82526 0.82509 1.90443 1.14377 1.63485 1.72288 1.46262 1.13278 1.43040 1.30159 1.21973 0.96973 0.90634 0.89889 1.18375 0.91363 0.93283 0.91415 1.21863 1.00949 0.96386 0.99959 1.21863 1.00668 0.98256 0.98402 1.20902 0.94562 1.25168 1.14032 0.92384 1.24883 0.94839 0.96510 0.97251 1.69793 1.05408 1.42890 1.34165 0.86613 0.79098 0.81208 0.80806 1.20273 1.21326 1.20262 1.21681 0.99241 0.89658 0.90198 0.95388 0.91181 0.90819 0.90844 0.91283 0.95625 0.90736 0.91502 0.90080 0.91687 0.91319 0.83743 0.75137 0.91873 0.91883 0.97334 0.89412 0.95332 0.95311 0.89428 0.97259 0.92860 0.88820 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.22 60.06 0.55 0.70 16 2 N -0.54 -4.68 4.89 -243.03 -1.19 -5.87 16 3 C 0.02 0.15 9.11 60.06 0.55 0.70 16 4 C 0.07 0.69 2.09 -67.59 -0.14 0.54 16 5 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 6 C -0.12 -0.96 4.85 -26.69 -0.13 -1.09 16 7 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 8 C 0.07 0.77 5.98 -3.71 -0.02 0.75 16 9 N -0.59 -7.61 2.97 -173.28 -0.52 -8.12 16 10 C 0.51 8.10 7.73 -11.58 -0.09 8.01 16 11 O -0.52 -9.27 15.93 5.50 0.09 -9.18 16 12 C 0.50 8.62 7.74 -11.59 -0.09 8.53 16 13 O -0.53 -9.47 13.18 5.50 0.07 -9.39 16 14 N -0.68 -12.39 4.95 -60.73 -0.30 -12.69 16 15 C 0.13 2.60 4.50 -4.05 -0.02 2.58 16 16 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 17 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 18 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 19 C -0.51 -13.03 8.01 -34.44 -0.28 -13.30 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 21 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 22 N -0.88 -23.45 9.35 55.43 0.52 -22.94 16 23 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 C 0.11 1.28 5.31 -3.71 -0.02 1.26 16 28 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.07 0.62 6.44 -51.93 -0.33 0.28 16 31 H 0.07 0.46 6.21 -51.93 -0.32 0.14 16 32 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.49 6.27 -51.93 -0.33 0.16 16 36 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.15 1.97 4.32 -54.75 -0.24 1.73 16 40 H 0.41 7.50 5.65 -40.82 -0.23 7.27 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 44 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 48 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 49 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 50 H 0.09 1.15 5.60 -51.93 -0.29 0.85 16 51 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -27.32 384.92 -8.50 -35.82 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.54 Total: 6.47 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 0.58 Total: 4.68 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -1.49 Total: -49.63 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.16 Total: -18.57 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.32 -8.50 -35.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.725 kcal (2) G-P(sol) polarization free energy of solvation -27.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds