Wall clock time and date at job start Fri Apr 10 2020 18:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46899 * 111.00245 * 2 1 4 4 C 1.46904 * 110.99526 * 123.94741 * 2 1 3 5 5 H 1.09001 * 109.50031 * 300.00119 * 4 2 1 6 6 C 1.53048 * 109.49543 * 179.97438 * 4 2 1 7 7 C 1.53039 * 109.53484 * 178.65087 * 6 4 2 8 8 C 1.53191 * 109.31201 * 61.36629 * 7 6 4 9 9 N 1.46922 * 108.77723 * 305.35739 * 8 7 6 10 10 C 1.34777 * 120.63569 * 233.58690 * 9 8 7 11 11 O 1.21346 * 119.99953 * 171.37695 * 10 9 8 12 12 C 1.49450 * 119.99995 * 351.38676 * 10 9 8 13 13 O 1.21352 * 119.99551 * 353.24143 * 12 10 9 14 14 N 1.34776 * 120.00037 * 173.23772 * 12 10 9 15 15 C 1.46495 * 119.99797 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47183 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.46985 * 300.00337 * 16 15 14 18 18 C 1.52997 * 109.47052 * 59.99773 * 16 15 14 19 19 C 1.50700 * 109.47305 * 179.97438 * 16 15 14 20 20 H 1.07998 * 120.00174 * 0.02562 * 19 16 15 21 21 C 1.37882 * 119.99759 * 179.97438 * 19 16 15 22 22 N 1.31506 * 120.00255 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 119.99692 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47182 * 60.00597 * 23 21 19 25 25 H 1.48505 * 109.47059 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47599 * 300.00614 * 23 21 19 27 27 C 1.46929 * 118.73493 * 53.61260 * 9 8 7 28 28 H 1.09003 * 109.47705 * 296.05428 * 1 2 3 29 29 H 1.09002 * 109.47142 * 56.05115 * 1 2 3 30 30 H 1.09003 * 109.47574 * 176.04663 * 1 2 3 31 31 H 1.08999 * 109.47492 * 183.95195 * 3 2 1 32 32 H 1.09006 * 109.46575 * 303.95081 * 3 2 1 33 33 H 1.08997 * 109.47678 * 63.94675 * 3 2 1 34 34 H 1.08996 * 109.45677 * 298.66861 * 6 4 2 35 35 H 1.08997 * 109.45867 * 58.64443 * 6 4 2 36 36 H 1.09008 * 109.49682 * 181.31453 * 7 6 4 37 37 H 1.09000 * 109.50279 * 301.37830 * 7 6 4 38 38 H 1.08991 * 109.59056 * 65.15436 * 8 7 6 39 39 H 1.09005 * 109.58141 * 185.43521 * 8 7 6 40 40 H 0.96995 * 119.99480 * 0.02562 * 14 12 10 41 41 H 1.09007 * 109.47500 * 300.00223 * 15 14 12 42 42 H 1.09000 * 109.47334 * 60.00179 * 15 14 12 43 43 H 1.08999 * 109.47004 * 59.99535 * 17 16 15 44 44 H 1.09001 * 109.47064 * 179.97438 * 17 16 15 45 45 H 1.09000 * 109.46796 * 299.99566 * 17 16 15 46 46 H 1.09003 * 109.47253 * 60.00536 * 18 16 15 47 47 H 1.08997 * 109.47589 * 179.97438 * 18 16 15 48 48 H 1.09004 * 109.47630 * 300.00362 * 18 16 15 49 49 H 0.97003 * 120.00203 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.58610 * 186.60356 * 27 9 8 51 51 H 1.09000 * 109.58541 * 66.17694 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 1 1.6460 -0.3202 2.0691 6 6 3.5252 -0.7441 1.1041 7 6 4.0745 -1.5133 2.3077 8 6 3.6100 -2.9712 2.2321 9 7 2.1454 -2.9955 2.1179 10 6 1.4015 -3.7202 2.9770 11 8 0.1930 -3.6113 2.9741 12 6 2.0651 -4.6576 3.9332 13 8 3.2593 -4.8589 3.8553 14 7 1.3373 -5.2792 4.8821 15 6 1.9878 -6.1985 5.8191 16 6 0.9450 -6.7646 6.7850 17 6 0.2951 -5.6185 7.5630 18 6 -0.1274 -7.5166 5.9942 19 6 1.6139 -7.7108 7.7484 20 1 2.6767 -7.8901 7.6792 21 6 0.8693 -8.3468 8.7191 22 7 -0.4247 -8.1281 8.8039 23 14 1.6984 -9.5201 9.9129 24 1 2.7403 -8.7914 10.6802 25 1 0.6862 -10.0695 10.8505 26 1 2.3278 -10.6327 9.1571 27 6 1.5072 -2.2152 1.0490 28 1 -0.3634 0.4514 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9162 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 3.8749 -1.2118 0.1838 35 1 3.8746 0.2877 1.1426 36 1 5.1640 -1.4776 2.2960 37 1 3.7057 -1.0607 3.2281 38 1 4.0527 -3.4510 1.3594 39 1 3.9170 -3.4997 3.1347 40 1 0.3828 -5.1184 4.9441 41 1 2.4504 -7.0152 5.2649 42 1 2.7521 -5.6628 6.3822 43 1 -0.1888 -4.9346 6.8658 44 1 -0.4481 -6.0218 8.2508 45 1 1.0591 -5.0828 8.1264 46 1 0.3354 -8.3331 5.4399 47 1 -0.8701 -7.9203 6.6822 48 1 -0.6114 -6.8326 5.2970 49 1 -0.9486 -8.5758 9.4865 50 1 0.4246 -2.2444 1.1719 51 1 1.7784 -2.6334 0.0796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422483359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:37 Heat of formation + Delta-G solvation = -68.970723 kcal Electronic energy + Delta-G solvation = -28964.341425 eV Core-core repulsion = 25091.644652 eV Total energy + Delta-G solvation = -3872.696773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.10245 -40.33950 -39.22262 -38.30443 -37.10893 -35.08989 -33.53945 -32.75517 -31.38299 -28.95369 -28.07341 -27.59769 -27.29439 -26.31163 -25.56676 -23.80080 -22.87360 -21.53026 -20.83710 -20.51116 -18.89792 -18.24911 -17.76082 -17.25030 -16.83497 -16.69765 -16.43626 -16.20098 -15.88337 -15.70706 -15.51266 -15.07123 -14.92396 -14.77091 -14.54193 -14.32496 -14.07902 -14.00145 -13.73811 -13.22266 -13.18779 -13.11638 -12.93765 -12.76204 -12.68568 -12.62060 -12.45288 -12.37193 -12.27968 -12.12164 -11.89550 -11.76755 -11.50864 -11.43647 -11.25009 -10.74200 -10.41938 -10.32043 -10.08283 -9.86423 -9.40714 -8.01144 -6.17776 0.28669 1.23344 1.46563 1.47835 1.54198 2.06020 2.40311 2.51722 2.93762 3.22807 3.28257 3.63922 3.80005 4.02618 4.05810 4.18988 4.28520 4.33885 4.44248 4.45491 4.47564 4.53568 4.64068 4.67067 4.69673 4.76366 4.80798 4.90508 4.94274 4.98083 4.99185 5.00835 5.02925 5.07368 5.14693 5.16397 5.19691 5.34368 5.37490 5.52216 5.63871 5.67536 5.92107 5.97495 6.01880 6.10352 6.18183 6.24818 6.40889 6.65793 6.85641 6.93277 7.50248 8.97974 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028911 B = 0.002440 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.250102 B =11474.314157 C =11995.920698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.544 5.544 3 C 0.021 3.979 4 C 0.077 3.923 5 H 0.029 0.971 6 C -0.110 4.110 7 C -0.128 4.128 8 C 0.064 3.936 9 N -0.575 5.575 10 C 0.509 3.491 11 O -0.547 6.547 12 C 0.500 3.500 13 O -0.532 6.532 14 N -0.680 5.680 15 C 0.143 3.857 16 C 0.051 3.949 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.525 4.525 20 H 0.053 0.947 21 C 0.026 3.974 22 N -0.902 5.902 23 Si 0.948 3.052 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.115 3.885 28 H 0.020 0.980 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.412 0.588 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.023 0.977 47 H 0.063 0.937 48 H 0.028 0.972 49 H 0.260 0.740 50 H 0.081 0.919 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 17.580 -17.501 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.268 5.268 3 C -0.127 4.127 4 C -0.033 4.033 5 H 0.047 0.953 6 C -0.148 4.148 7 C -0.166 4.166 8 C -0.056 4.056 9 N -0.308 5.308 10 C 0.292 3.708 11 O -0.425 6.425 12 C 0.281 3.719 13 O -0.412 6.412 14 N -0.331 5.331 15 C 0.021 3.979 16 C 0.050 3.950 17 C -0.182 4.182 18 C -0.183 4.183 19 C -0.564 4.564 20 H 0.071 0.929 21 C -0.174 4.174 22 N -0.540 5.540 23 Si 0.775 3.225 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.007 4.007 28 H 0.039 0.961 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.249 0.751 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.082 0.918 48 H 0.047 0.953 49 H 0.069 0.931 50 H 0.099 0.901 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.109 17.203 -17.868 25.545 hybrid contribution -0.673 -0.364 1.671 1.837 sum 5.437 16.839 -16.198 23.989 Atomic orbital electron populations 1.22501 0.86948 1.02634 1.00999 1.62019 1.08317 1.14847 1.41666 1.22516 1.01829 0.87453 1.00904 1.21895 0.96876 0.92680 0.91808 0.95299 1.21670 0.92240 1.01779 0.99077 1.21929 1.02514 0.93834 0.98336 1.22962 0.76712 0.98961 1.06986 1.47997 1.08953 1.44478 1.29385 1.20115 0.86785 0.81831 0.82099 1.90728 1.14659 1.66783 1.70343 1.20210 0.86992 0.82377 0.82283 1.90470 1.14682 1.63622 1.72444 1.46115 1.13264 1.43231 1.30460 1.21575 0.96009 0.90694 0.89648 1.18373 0.91864 0.93111 0.91650 1.21712 1.00208 0.96488 0.99796 1.21717 1.00028 0.98433 0.98073 1.21212 0.94549 1.25835 1.14799 0.92863 1.25509 0.95375 0.97870 0.98665 1.69919 1.06193 1.43439 1.34495 0.85765 0.78204 0.79500 0.79024 1.20010 1.21243 1.20082 1.21808 0.98508 0.90646 0.89784 0.96127 0.89628 0.91465 0.89844 0.90082 0.95950 0.89980 0.89866 0.87868 0.92652 0.89863 0.85776 0.75053 0.92545 0.92327 0.95342 0.91825 0.95628 0.95735 0.91817 0.95324 0.93071 0.90100 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.22 127.69 1.18 1.43 16 2 N -0.54 -8.32 4.89 -922.80 -4.51 -12.83 16 3 C 0.02 0.24 9.11 127.69 1.16 1.40 16 4 C 0.08 1.34 2.09 44.99 0.09 1.44 16 5 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 6 C -0.11 -1.51 4.85 30.62 0.15 -1.36 16 7 C -0.13 -2.00 6.08 30.67 0.19 -1.81 16 8 C 0.06 1.36 5.98 86.36 0.52 1.87 16 9 N -0.58 -14.35 2.97 -820.50 -2.44 -16.79 16 10 C 0.51 15.97 7.73 87.27 0.67 16.65 16 11 O -0.55 -19.31 15.93 -3.23 -0.05 -19.36 16 12 C 0.50 17.09 7.74 87.27 0.68 17.77 16 13 O -0.53 -18.86 13.18 -3.25 -0.04 -18.90 16 14 N -0.68 -24.67 4.95 -464.41 -2.30 -26.97 16 15 C 0.14 5.85 4.50 86.38 0.39 6.24 16 16 C 0.05 2.33 0.50 -52.93 -0.03 2.31 16 17 C -0.12 -5.64 8.08 71.98 0.58 -5.05 16 18 C -0.12 -5.70 8.08 71.98 0.58 -5.12 16 19 C -0.53 -27.09 8.01 25.60 0.21 -26.88 16 20 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 21 C 0.03 1.33 5.15 84.66 0.44 1.77 16 22 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 23 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.11 2.41 5.31 86.36 0.46 2.87 16 28 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.09 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.07 1.07 6.44 -2.39 -0.02 1.06 16 31 H 0.08 0.79 6.21 -2.39 -0.01 0.77 16 32 H 0.08 0.74 8.12 -2.38 -0.02 0.73 16 33 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 0.92 6.27 -2.39 -0.01 0.90 16 36 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.13 3.24 4.32 -47.06 -0.20 3.04 16 40 H 0.41 14.84 5.65 -92.71 -0.52 14.32 16 41 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.03 1.13 6.86 -2.39 -0.02 1.12 16 44 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 45 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 48 H 0.03 1.15 6.86 -2.38 -0.02 1.14 16 49 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 50 H 0.08 1.95 5.60 -2.39 -0.01 1.93 16 51 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -57.93 384.92 0.35 -57.57 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.21 Total: 27.88 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 7.26 Total: 13.51 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -9.05 Total: -104.74 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.09 Total: -38.27 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -57.93 0.35 -57.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422483359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.396 kcal (2) G-P(sol) polarization free energy of solvation -57.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds