Wall clock time and date at job start Fri Apr 10 2020 18:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46262 * 2 1 4 4 C 1.54946 * 109.45959 * 240.02553 * 2 1 3 5 5 C 1.47546 * 109.73319 * 170.51715 * 4 2 1 6 6 N 1.46266 * 114.37282 * 62.21681 * 5 4 2 7 7 C 1.46900 * 110.99587 * 148.55609 * 6 5 4 8 8 C 1.44760 * 110.63972 * 272.25274 * 6 5 4 9 9 C 1.54021 * 109.68476 * 94.16389 * 8 6 5 10 10 N 1.44678 * 109.45268 * 119.97692 * 2 1 3 11 11 C 1.34777 * 118.54655 * 29.06717 * 10 2 1 12 12 O 1.21346 * 120.00259 * 7.69114 * 11 10 2 13 13 C 1.49452 * 119.99610 * 187.68948 * 11 10 2 14 14 O 1.21348 * 119.99823 * 6.47416 * 13 11 10 15 15 N 1.34779 * 119.99659 * 186.47336 * 13 11 10 16 16 C 1.46496 * 119.99692 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.47116 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.46865 * 299.99955 * 17 16 15 19 19 C 1.52996 * 109.46982 * 59.99892 * 17 16 15 20 20 C 1.50697 * 109.46983 * 180.02562 * 17 16 15 21 21 H 1.07998 * 120.00550 * 0.02562 * 20 17 16 22 22 C 1.37878 * 119.99714 * 179.97438 * 20 17 16 23 23 N 1.31511 * 119.99999 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 119.99880 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.47093 * 90.00165 * 24 22 20 26 26 H 1.48506 * 109.46922 * 209.99716 * 24 22 20 27 27 H 1.48497 * 109.47115 * 329.99693 * 24 22 20 28 28 H 1.08996 * 109.47077 * 162.95021 * 1 2 3 29 29 H 1.09003 * 109.46896 * 282.94904 * 1 2 3 30 30 H 1.08997 * 109.47450 * 42.94595 * 1 2 3 31 31 H 1.08998 * 109.42868 * 50.43805 * 4 2 1 32 32 H 1.09000 * 109.38954 * 290.56956 * 4 2 1 33 33 H 1.08996 * 108.50117 * 300.95435 * 5 4 2 34 34 H 1.09000 * 108.50478 * 183.48507 * 5 4 2 35 35 H 1.08997 * 109.47402 * 59.99709 * 7 6 5 36 36 H 1.08997 * 109.46742 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.46995 * 299.99753 * 7 6 5 38 38 H 1.09004 * 109.43149 * 214.23007 * 8 6 5 39 39 H 1.09000 * 109.43798 * 334.09695 * 8 6 5 40 40 H 1.09001 * 109.06971 * 199.46586 * 9 8 6 41 41 H 1.09004 * 109.00627 * 80.49562 * 9 8 6 42 42 H 0.96998 * 120.00269 * 0.02562 * 15 13 11 43 43 H 1.09001 * 109.47642 * 300.00250 * 16 15 13 44 44 H 1.08997 * 109.47315 * 60.00013 * 16 15 13 45 45 H 1.09003 * 109.46945 * 60.00256 * 18 17 16 46 46 H 1.09003 * 109.46861 * 179.97438 * 18 17 16 47 47 H 1.08996 * 109.47333 * 300.00296 * 18 17 16 48 48 H 1.09001 * 109.46881 * 60.00593 * 19 17 16 49 49 H 1.09003 * 109.47111 * 180.02562 * 19 17 16 50 50 H 1.08994 * 109.47632 * 300.00330 * 19 17 16 51 51 H 0.97002 * 120.00243 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0462 -0.7299 -1.2655 5 6 3.5038 -0.5384 -1.3914 6 7 4.2834 -1.0951 -0.2862 7 6 5.6019 -1.5490 -0.7483 8 6 4.4130 -0.1292 0.7842 9 6 3.3016 -0.3569 1.8259 10 7 2.0118 -0.6816 1.1817 11 6 1.2506 -1.6555 1.7189 12 8 0.2575 -2.0399 1.1371 13 6 1.6297 -2.2620 3.0311 14 8 2.5528 -1.7999 3.6690 15 7 0.9462 -3.3221 3.5060 16 6 1.3181 -3.9170 4.7921 17 6 0.3919 -5.0965 5.0953 18 6 -1.0555 -4.6048 5.1604 19 6 0.5247 -6.1464 3.9903 20 6 0.7741 -5.7080 6.4185 21 1 1.5952 -5.2964 6.9867 22 6 0.0749 -6.7925 6.9044 23 7 -0.9259 -7.2928 6.2133 24 14 0.5482 -7.5501 8.5450 25 1 -0.2121 -6.8865 9.6344 26 1 0.2290 -9.0004 8.5309 27 1 2.0038 -7.3658 8.7737 28 1 -0.3633 -0.9825 -0.3013 29 1 -0.3633 0.2303 1.0016 30 1 -0.3634 0.7522 -0.7001 31 1 1.5497 -0.3232 -2.1465 32 1 1.8262 -1.7944 -1.1844 33 1 3.7080 0.5304 -1.4549 34 1 3.8353 -1.0059 -2.3186 35 1 6.1483 -0.7063 -1.1719 36 1 6.1605 -1.9587 0.0932 37 1 5.4749 -2.3191 -1.5091 38 1 5.3863 -0.2447 1.2611 39 1 4.3270 0.8780 0.3763 40 1 3.1833 0.5468 2.4238 41 1 3.5905 -1.1804 2.4791 42 1 0.2086 -3.6917 2.9959 43 1 2.3491 -4.2677 4.7457 44 1 1.2240 -3.1690 5.5792 45 1 -1.3322 -4.1622 4.2034 46 1 -1.7153 -5.4451 5.3760 47 1 -1.1500 -3.8568 5.9475 48 1 1.5558 -6.4967 3.9441 49 1 -0.1355 -6.9865 4.2061 50 1 0.2480 -5.7038 3.0335 51 1 -1.4181 -8.0556 6.5553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422484364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:44 Heat of formation + Delta-G solvation = -53.309582 kcal Electronic energy + Delta-G solvation = -29726.463583 eV Core-core repulsion = 25854.445929 eV Total energy + Delta-G solvation = -3872.017655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.17693 -40.31908 -39.12413 -38.23941 -36.43998 -35.07585 -34.35848 -32.72564 -30.47599 -30.14375 -27.82600 -27.58743 -27.18107 -26.01755 -25.26429 -24.44075 -22.47697 -21.69258 -20.84735 -20.41284 -18.68947 -17.83849 -17.50517 -17.29151 -17.15451 -16.63135 -16.48423 -16.30200 -15.97207 -15.55398 -15.26705 -15.14522 -14.76431 -14.55945 -14.28469 -14.09024 -14.04254 -13.80733 -13.47978 -13.24528 -13.19758 -13.10636 -12.99306 -12.81453 -12.69006 -12.56913 -12.42577 -12.27418 -12.22699 -12.11753 -11.96571 -11.58121 -11.51209 -11.31295 -11.24059 -10.72489 -10.40072 -10.13128 -9.99142 -9.61244 -9.20825 -8.00708 -6.17418 0.45744 1.43925 1.45059 1.48547 1.56347 2.22005 2.44551 2.57046 3.00911 3.23083 3.40390 3.75955 3.99346 4.01552 4.07203 4.23314 4.34868 4.36487 4.42943 4.48653 4.52188 4.67740 4.68531 4.73840 4.77226 4.83188 4.86038 4.90980 4.95912 5.01822 5.03628 5.04226 5.04536 5.10243 5.17549 5.28198 5.31710 5.35282 5.51649 5.64918 5.67948 5.74021 6.03859 6.11095 6.18043 6.19775 6.22785 6.37147 6.41914 6.83415 6.88871 7.06951 7.50601 8.98610 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.002917 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.881621 B = 9596.074577 C =10132.881423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 H 0.103 0.897 4 C -0.121 4.121 5 C 0.059 3.941 6 N -0.565 5.565 7 C 0.032 3.968 8 C 0.049 3.951 9 C 0.085 3.915 10 N -0.555 5.555 11 C 0.505 3.495 12 O -0.537 6.537 13 C 0.493 3.507 14 O -0.539 6.539 15 N -0.682 5.682 16 C 0.145 3.855 17 C 0.051 3.949 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.526 4.526 21 H 0.052 0.948 22 C 0.026 3.974 23 N -0.902 5.902 24 Si 0.949 3.051 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.272 1.272 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.411 0.589 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.028 0.972 46 H 0.063 0.937 47 H 0.022 0.978 48 H 0.023 0.977 49 H 0.063 0.937 50 H 0.027 0.973 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 16.659 -16.684 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.121 0.879 4 C -0.160 4.160 5 C -0.069 4.069 6 N -0.289 5.289 7 C -0.115 4.115 8 C -0.080 4.080 9 C -0.037 4.037 10 N -0.287 5.287 11 C 0.288 3.712 12 O -0.415 6.415 13 C 0.275 3.725 14 O -0.419 6.419 15 N -0.334 5.334 16 C 0.022 3.978 17 C 0.051 3.949 18 C -0.181 4.181 19 C -0.179 4.179 20 C -0.565 4.565 21 H 0.070 0.930 22 C -0.174 4.174 23 N -0.540 5.540 24 Si 0.775 3.225 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.197 1.197 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.248 0.752 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.082 0.918 50 H 0.046 0.954 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.924 16.252 -16.365 24.730 hybrid contribution 0.148 -0.279 0.690 0.759 sum 9.072 15.972 -15.675 24.148 Atomic orbital electron populations 1.22212 0.93770 1.03563 1.01397 1.21431 0.94992 0.96093 0.83720 0.87940 1.21385 0.95953 1.00818 0.97846 1.21025 0.93881 0.98578 0.93380 1.60768 1.17326 1.40429 1.10400 1.22432 0.88459 0.99790 1.00868 1.22407 0.98606 0.94246 0.92758 1.23061 0.81236 1.04162 0.95198 1.47655 1.19585 1.33843 1.27591 1.20030 0.84138 0.81340 0.85725 1.90704 1.27976 1.60725 1.62083 1.20557 0.82999 0.81489 0.87476 1.90520 1.29144 1.62313 1.59955 1.46084 1.34581 1.30044 1.22671 1.21508 0.98745 0.95274 0.82256 1.18367 0.91796 0.90285 0.94499 1.21697 0.99349 0.99780 0.97230 1.21682 0.99562 1.01017 0.95688 1.21253 1.16244 1.14371 1.04630 0.93003 1.25507 0.94905 0.97004 0.99949 1.69930 1.20993 1.24408 1.38698 0.85701 0.78567 0.77479 0.80709 1.20519 1.21093 1.19677 0.91038 0.94567 0.90250 0.87861 0.93407 0.93025 0.90784 0.94218 0.91474 0.91440 0.89058 0.92217 0.90693 0.87269 0.75171 0.92837 0.92879 0.95341 0.91796 0.95845 0.95813 0.91838 0.95381 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 7.83 71.98 0.56 -2.69 16 2 C 0.14 2.72 2.60 46.00 0.12 2.84 16 3 H 0.10 1.51 8.09 -2.39 -0.02 1.49 16 4 C -0.12 -2.08 5.27 29.55 0.16 -1.93 16 5 C 0.06 0.86 4.97 84.72 0.42 1.29 16 6 N -0.56 -10.24 4.41 -938.30 -4.14 -14.38 16 7 C 0.03 0.46 9.17 127.69 1.17 1.63 16 8 C 0.05 0.80 5.52 87.05 0.48 1.28 16 9 C 0.09 1.92 5.69 86.48 0.49 2.41 16 10 N -0.55 -13.90 2.51 -794.63 -1.99 -15.89 16 11 C 0.51 16.10 7.11 87.27 0.62 16.72 16 12 O -0.54 -18.47 12.95 -3.24 -0.04 -18.51 16 13 C 0.49 17.65 7.67 87.27 0.67 18.32 16 14 O -0.54 -20.18 13.07 -3.24 -0.04 -20.22 16 15 N -0.68 -25.82 4.95 -464.41 -2.30 -28.11 16 16 C 0.15 6.16 4.50 86.38 0.39 6.54 16 17 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 18 C -0.12 -5.72 8.08 71.98 0.58 -5.14 16 19 C -0.12 -5.66 8.08 71.98 0.58 -5.08 16 20 C -0.53 -27.71 8.01 25.60 0.21 -27.51 16 21 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 22 C 0.03 1.38 5.15 84.66 0.44 1.81 16 23 N -0.90 -48.87 9.35 21.45 0.20 -48.67 16 24 Si 0.95 42.53 29.54 68.60 2.03 44.56 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 H 0.07 1.88 6.04 -2.39 -0.01 1.87 16 29 H 0.04 0.90 7.62 -2.39 -0.02 0.88 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.27 8.13 -2.39 -0.02 1.25 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 0.60 7.18 -2.39 -0.02 0.58 16 34 H 0.07 0.97 7.61 -2.39 -0.02 0.95 16 35 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.07 0.99 7.97 -2.39 -0.02 0.97 16 37 H 0.07 0.95 8.03 -2.39 -0.02 0.93 16 38 H 0.09 1.32 7.53 -2.38 -0.02 1.30 16 39 H 0.06 0.77 7.14 -2.39 -0.02 0.75 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.11 3.15 4.64 -37.09 -0.17 2.98 16 42 H 0.41 15.38 5.65 -92.71 -0.52 14.85 16 43 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 45 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 46 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 47 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 50 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 51 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -59.92 380.95 0.80 -59.12 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.23 Total: 29.22 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 6.86 Total: 12.89 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -8.23 Total: -107.06 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.08 Total: -38.73 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -59.92 0.80 -59.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422484364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.810 kcal (2) G-P(sol) polarization free energy of solvation -59.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds