Wall clock time and date at job start Fri Apr 10 2020 18:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47376 * 2 1 4 4 N 1.46510 * 109.46722 * 240.00513 * 2 1 3 5 5 C 1.34775 * 120.00068 * 84.99947 * 4 2 1 6 6 O 1.21277 * 119.99798 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99691 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.47510 * 40.00217 * 7 5 4 9 9 N 1.46908 * 109.46879 * 159.99841 * 7 5 4 10 10 C 1.52997 * 109.47128 * 279.99792 * 7 5 4 11 11 C 1.52998 * 109.47067 * 175.00325 * 10 7 5 12 12 C 1.50703 * 109.47163 * 179.97438 * 11 10 7 13 13 H 1.07997 * 120.00129 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99832 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00184 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99576 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47493 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47383 * 120.00094 * 16 14 12 19 19 H 1.48506 * 109.47054 * 239.99324 * 16 14 12 20 20 C 1.50696 * 109.47437 * 120.00314 * 2 1 3 21 21 O 1.21282 * 120.00078 * 110.47459 * 20 2 1 22 22 N 1.34770 * 120.00077 * 290.47807 * 20 2 1 23 23 C 1.46993 * 120.61604 * 5.17770 * 22 20 2 24 24 C 1.53188 * 108.73745 * 126.38839 * 23 22 20 25 25 C 1.53038 * 109.33967 * 54.62681 * 24 23 22 26 26 C 1.53042 * 109.53922 * 298.61597 * 25 24 23 27 27 C 1.46929 * 120.63049 * 185.16119 * 22 20 2 28 28 H 1.09003 * 109.58978 * 113.84085 * 27 22 20 29 29 C 1.52994 * 109.70589 * 353.48380 * 27 22 20 30 30 H 1.09001 * 109.47093 * 173.92751 * 1 2 3 31 31 H 1.09005 * 109.46920 * 293.92292 * 1 2 3 32 32 H 1.08993 * 109.47283 * 53.91873 * 1 2 3 33 33 H 0.97000 * 119.99741 * 264.99547 * 4 2 1 34 34 H 1.00900 * 110.99688 * 296.04368 * 9 7 5 35 35 H 1.00900 * 110.99541 * 59.99682 * 9 7 5 36 36 H 1.08997 * 109.47291 * 295.00014 * 10 7 5 37 37 H 1.09000 * 109.47030 * 55.00148 * 10 7 5 38 38 H 1.09005 * 109.47058 * 300.00200 * 11 10 7 39 39 H 1.09000 * 109.47340 * 60.00012 * 11 10 7 40 40 H 0.97001 * 119.99427 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.62920 * 6.59990 * 23 22 20 42 42 H 1.09001 * 109.58442 * 246.15016 * 23 22 20 43 43 H 1.09000 * 109.50290 * 294.65921 * 24 23 22 44 44 H 1.09008 * 109.50128 * 174.59065 * 24 23 22 45 45 H 1.09005 * 109.46229 * 58.63786 * 25 24 23 46 46 H 1.08999 * 109.46202 * 178.59756 * 25 24 23 47 47 H 1.08994 * 109.49798 * 181.31275 * 26 25 24 48 48 H 1.08999 * 109.49478 * 301.38405 * 26 25 24 49 49 H 1.09005 * 109.47077 * 303.17040 * 29 27 22 50 50 H 1.09005 * 109.47138 * 63.16825 * 29 27 22 51 51 H 1.08994 * 109.47632 * 183.17135 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6497 -0.7284 -3.5876 8 1 2.2154 -1.7271 -3.6336 9 7 2.2609 0.0302 -4.7841 10 6 4.1745 -0.8376 -3.5261 11 6 4.6747 -1.6663 -4.7109 12 6 6.1767 -1.7734 -4.6507 13 1 6.7202 -1.2976 -3.8479 14 6 6.8570 -2.4779 -5.6212 15 7 6.1952 -3.0569 -6.5991 16 14 8.7187 -2.6112 -5.5461 17 1 9.2200 -1.8776 -4.3562 18 1 9.1092 -4.0406 -5.4476 19 1 9.3072 -2.0210 -6.7752 20 6 2.0324 -0.7104 1.2304 21 8 2.5809 -1.7872 1.1274 22 7 1.8721 -0.1493 2.4452 23 6 1.1107 1.0986 2.5988 24 6 0.0212 0.8836 3.6540 25 6 0.6617 0.3745 4.9473 26 6 1.3497 -0.9670 4.6842 27 6 2.4547 -0.7736 3.6409 28 1 3.2327 -0.1277 4.0481 29 6 3.0559 -2.1314 3.2729 30 1 -0.3633 -1.0219 -0.1087 31 1 -0.3633 0.4167 0.9394 32 1 -0.3633 0.6052 -0.8305 33 1 2.2490 -1.6317 -1.1528 34 1 1.2572 0.0613 -4.8822 35 1 2.6514 0.9604 -4.7651 36 1 4.6123 0.1596 -3.5697 37 1 4.4668 -1.3223 -2.5945 38 1 4.2369 -2.6636 -4.6674 39 1 4.3824 -1.1816 -5.6425 40 1 6.6739 -3.5529 -7.2816 41 1 0.6504 1.3662 1.6476 42 1 1.7790 1.8971 2.9211 43 1 -0.6976 0.1493 3.2905 44 1 -0.4890 1.8273 3.8478 45 1 1.3983 1.0980 5.2971 46 1 -0.1086 0.2446 5.7074 47 1 1.7856 -1.3402 5.6108 48 1 0.6182 -1.6840 4.3115 49 1 2.2877 -2.7583 2.8201 50 1 3.8718 -1.9876 2.5644 51 1 3.4367 -2.6159 4.1720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424111652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:00 Heat of formation + Delta-G solvation = -74.382777 kcal Electronic energy + Delta-G solvation = -28850.256211 eV Core-core repulsion = 24977.324754 eV Total energy + Delta-G solvation = -3872.931457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.18413 -39.67699 -37.79149 -35.70084 -34.98248 -33.45899 -33.00306 -32.75375 -30.56763 -30.01987 -28.02936 -26.42752 -25.33233 -24.47473 -23.45960 -22.32518 -21.32581 -20.51032 -19.91915 -19.24989 -17.69026 -16.94625 -16.41769 -16.17878 -15.84306 -15.69329 -15.46904 -15.08565 -14.65168 -14.54754 -14.45062 -14.19254 -14.05757 -13.94099 -13.47087 -13.35596 -12.85761 -12.67888 -12.52352 -12.43955 -12.27184 -12.05164 -11.95820 -11.79765 -11.49818 -11.46571 -11.37804 -11.10650 -10.98428 -10.87372 -10.64113 -10.49175 -10.12984 -9.75577 -9.41592 -9.32815 -9.10602 -8.94101 -8.90695 -8.33258 -8.17815 -5.89659 -3.91266 2.28368 2.44040 2.77596 3.28211 3.37279 3.44533 3.49052 4.01412 4.25462 4.35990 4.41462 4.54085 4.56434 4.75395 4.80763 4.84725 4.87531 4.92644 5.01088 5.06912 5.15119 5.22854 5.34241 5.37005 5.40109 5.46011 5.50842 5.52331 5.56258 5.57902 5.60694 5.78470 5.84174 5.88287 5.98802 6.06253 6.35670 6.41848 6.51241 6.70100 7.03079 7.14213 7.39412 7.61426 7.80828 7.82756 7.85531 8.01071 8.17466 8.29606 8.53370 9.16806 9.71647 11.21369 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.002696 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.700096 B =10383.793078 C =11680.829397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 H 0.108 0.892 4 N -0.714 5.714 5 C 0.488 3.512 6 O -0.556 6.556 7 C 0.080 3.920 8 H 0.099 0.901 9 N -0.806 5.806 10 C -0.096 4.096 11 C 0.031 3.969 12 C -0.520 4.520 13 H 0.052 0.948 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.514 3.486 21 O -0.520 6.520 22 N -0.606 5.606 23 C 0.092 3.908 24 C -0.136 4.136 25 C -0.121 4.121 26 C -0.132 4.132 27 C 0.143 3.857 28 H 0.072 0.928 29 C -0.139 4.139 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.333 0.667 35 H 0.348 0.652 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.013 0.987 39 H 0.035 0.965 40 H 0.258 0.742 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.120 7.668 24.311 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 H 0.126 0.874 4 N -0.368 5.368 5 C 0.275 3.725 6 O -0.434 6.434 7 C -0.036 4.036 8 H 0.117 0.883 9 N -0.333 5.333 10 C -0.134 4.134 11 C -0.006 4.006 12 C -0.558 4.558 13 H 0.070 0.930 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C 0.302 3.698 21 O -0.396 6.396 22 N -0.341 5.341 23 C -0.031 4.031 24 C -0.174 4.174 25 C -0.158 4.158 26 C -0.170 4.170 27 C 0.041 3.959 28 H 0.090 0.910 29 C -0.196 4.196 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.584 7.257 23.621 29.214 hybrid contribution 0.606 0.229 0.898 1.108 sum -14.978 7.486 24.519 29.691 Atomic orbital electron populations 1.22343 0.93183 1.03571 1.03408 1.20738 0.95494 0.98128 0.84420 0.87436 1.46016 1.67481 1.15116 1.08232 1.22825 0.75921 0.87938 0.85858 1.90626 1.51024 1.16303 1.85432 1.21834 0.99983 0.97497 0.84237 0.88286 1.59005 1.15256 1.22252 1.36818 1.21664 0.88182 1.01571 1.01971 1.19020 0.94803 0.94169 0.92605 1.21321 0.92531 1.32345 1.09636 0.92953 1.24993 0.98087 0.95780 0.95533 1.69989 1.35145 1.34787 1.13326 0.86596 0.86237 0.77653 0.77849 1.19865 1.21106 1.21091 1.20659 0.78983 0.85786 0.84416 1.90793 1.42441 1.20634 1.85690 1.48060 1.53955 1.25546 1.06534 1.22091 0.93906 0.85996 1.01086 1.21926 0.97766 1.02155 0.95538 1.21524 1.00035 0.97071 0.97194 1.22025 0.98280 0.97783 0.98923 1.21328 0.94467 0.95662 0.84456 0.91047 1.22227 1.02578 0.94624 1.00173 0.91545 0.90646 0.90650 0.74970 0.85485 0.83840 0.92899 0.92668 0.96823 0.94670 0.93198 0.88442 0.90977 0.91286 0.90416 0.91667 0.91539 0.90691 0.91371 0.91023 0.90609 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.99 37.16 0.33 -1.16 16 2 C 0.12 1.38 2.14 -69.08 -0.15 1.23 16 3 H 0.11 1.28 7.12 -51.93 -0.37 0.91 16 4 N -0.71 -9.73 5.00 -54.93 -0.27 -10.01 16 5 C 0.49 7.75 7.03 -10.99 -0.08 7.67 16 6 O -0.56 -9.80 15.91 5.56 0.09 -9.71 16 7 C 0.08 1.38 3.15 -68.86 -0.22 1.17 16 8 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 9 N -0.81 -13.66 8.44 -5.65 -0.05 -13.70 16 10 C -0.10 -2.00 4.78 -26.73 -0.13 -2.13 16 11 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 12 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 16 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 C 0.51 5.97 6.99 -10.99 -0.08 5.89 16 21 O -0.52 -7.45 11.24 5.56 0.06 -7.39 16 22 N -0.61 -5.41 2.97 -165.17 -0.49 -5.90 16 23 C 0.09 0.57 5.54 -3.68 -0.02 0.55 16 24 C -0.14 -0.65 5.97 -26.61 -0.16 -0.81 16 25 C -0.12 -0.59 5.88 -26.69 -0.16 -0.75 16 26 C -0.13 -0.83 5.37 -26.61 -0.14 -0.97 16 27 C 0.14 1.20 3.49 -67.60 -0.24 0.97 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 C -0.14 -1.44 7.60 37.15 0.28 -1.15 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.50 5.25 -51.93 -0.27 0.23 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.41 5.65 7.72 -40.82 -0.32 5.34 16 34 H 0.33 4.85 9.06 -39.29 -0.36 4.49 16 35 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.99 7.75 -51.93 -0.40 0.59 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.10 0.57 4.11 -51.93 -0.21 0.36 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.37 8.11 -51.93 -0.42 -0.06 16 44 H 0.08 0.27 8.14 -51.92 -0.42 -0.16 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.85 6.82 -51.93 -0.35 0.50 16 50 H 0.08 0.97 6.70 -51.93 -0.35 0.63 16 51 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -33.71 395.33 -9.13 -42.84 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -8.85 Total: 10.00 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.29 Total: -2.63 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.08 Total: -56.27 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.15 Total: -17.10 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.71 -9.13 -42.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.540 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds