Wall clock time and date at job start Fri Apr 10 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47376 * 2 1 4 4 N 1.46510 * 109.46722 * 240.00513 * 2 1 3 5 5 C 1.34775 * 120.00068 * 84.99947 * 4 2 1 6 6 O 1.21277 * 119.99798 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99691 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.47510 * 40.00217 * 7 5 4 9 9 N 1.46908 * 109.46879 * 159.99841 * 7 5 4 10 10 C 1.52997 * 109.47128 * 279.99792 * 7 5 4 11 11 C 1.52998 * 109.47067 * 175.00325 * 10 7 5 12 12 C 1.50703 * 109.47163 * 179.97438 * 11 10 7 13 13 H 1.07997 * 120.00129 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99832 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00184 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99576 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47493 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47383 * 120.00094 * 16 14 12 19 19 H 1.48506 * 109.47054 * 239.99324 * 16 14 12 20 20 C 1.50696 * 109.47437 * 120.00314 * 2 1 3 21 21 O 1.21282 * 120.00078 * 110.47459 * 20 2 1 22 22 N 1.34770 * 120.00077 * 290.47807 * 20 2 1 23 23 C 1.46993 * 120.61604 * 5.17770 * 22 20 2 24 24 C 1.53188 * 108.73745 * 126.38839 * 23 22 20 25 25 C 1.53038 * 109.33967 * 54.62681 * 24 23 22 26 26 C 1.53042 * 109.53922 * 298.61597 * 25 24 23 27 27 C 1.46929 * 120.63049 * 185.16119 * 22 20 2 28 28 H 1.09003 * 109.58978 * 113.84085 * 27 22 20 29 29 C 1.52994 * 109.70589 * 353.48380 * 27 22 20 30 30 H 1.09001 * 109.47093 * 173.92751 * 1 2 3 31 31 H 1.09005 * 109.46920 * 293.92292 * 1 2 3 32 32 H 1.08993 * 109.47283 * 53.91873 * 1 2 3 33 33 H 0.97000 * 119.99741 * 264.99547 * 4 2 1 34 34 H 1.00900 * 110.99688 * 296.04368 * 9 7 5 35 35 H 1.00900 * 110.99541 * 59.99682 * 9 7 5 36 36 H 1.08997 * 109.47291 * 295.00014 * 10 7 5 37 37 H 1.09000 * 109.47030 * 55.00148 * 10 7 5 38 38 H 1.09005 * 109.47058 * 300.00200 * 11 10 7 39 39 H 1.09000 * 109.47340 * 60.00012 * 11 10 7 40 40 H 0.97001 * 119.99427 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.62920 * 6.59990 * 23 22 20 42 42 H 1.09001 * 109.58442 * 246.15016 * 23 22 20 43 43 H 1.09000 * 109.50290 * 294.65921 * 24 23 22 44 44 H 1.09008 * 109.50128 * 174.59065 * 24 23 22 45 45 H 1.09005 * 109.46229 * 58.63786 * 25 24 23 46 46 H 1.08999 * 109.46202 * 178.59756 * 25 24 23 47 47 H 1.08994 * 109.49798 * 181.31275 * 26 25 24 48 48 H 1.08999 * 109.49478 * 301.38405 * 26 25 24 49 49 H 1.09005 * 109.47077 * 303.17040 * 29 27 22 50 50 H 1.09005 * 109.47138 * 63.16825 * 29 27 22 51 51 H 1.08994 * 109.47632 * 183.17135 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6497 -0.7284 -3.5876 8 1 2.2154 -1.7271 -3.6336 9 7 2.2609 0.0302 -4.7841 10 6 4.1745 -0.8376 -3.5261 11 6 4.6747 -1.6663 -4.7109 12 6 6.1767 -1.7734 -4.6507 13 1 6.7202 -1.2976 -3.8479 14 6 6.8570 -2.4779 -5.6212 15 7 6.1952 -3.0569 -6.5991 16 14 8.7187 -2.6112 -5.5461 17 1 9.2200 -1.8776 -4.3562 18 1 9.1092 -4.0406 -5.4476 19 1 9.3072 -2.0210 -6.7752 20 6 2.0324 -0.7104 1.2304 21 8 2.5809 -1.7872 1.1274 22 7 1.8721 -0.1493 2.4452 23 6 1.1107 1.0986 2.5988 24 6 0.0212 0.8836 3.6540 25 6 0.6617 0.3745 4.9473 26 6 1.3497 -0.9670 4.6842 27 6 2.4547 -0.7736 3.6409 28 1 3.2327 -0.1277 4.0481 29 6 3.0559 -2.1314 3.2729 30 1 -0.3633 -1.0219 -0.1087 31 1 -0.3633 0.4167 0.9394 32 1 -0.3633 0.6052 -0.8305 33 1 2.2490 -1.6317 -1.1528 34 1 1.2572 0.0613 -4.8822 35 1 2.6514 0.9604 -4.7651 36 1 4.6123 0.1596 -3.5697 37 1 4.4668 -1.3223 -2.5945 38 1 4.2369 -2.6636 -4.6674 39 1 4.3824 -1.1816 -5.6425 40 1 6.6739 -3.5529 -7.2816 41 1 0.6504 1.3662 1.6476 42 1 1.7790 1.8971 2.9211 43 1 -0.6976 0.1493 3.2905 44 1 -0.4890 1.8273 3.8478 45 1 1.3983 1.0980 5.2971 46 1 -0.1086 0.2446 5.7074 47 1 1.7856 -1.3402 5.6108 48 1 0.6182 -1.6840 4.3115 49 1 2.2877 -2.7583 2.8201 50 1 3.8718 -1.9876 2.5644 51 1 3.4367 -2.6159 4.1720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424111652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:59 Heat of formation + Delta-G solvation = -98.522333 kcal Electronic energy + Delta-G solvation = -28851.302980 eV Core-core repulsion = 24977.324754 eV Total energy + Delta-G solvation = -3873.978227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.04875 -40.86899 -38.54419 -37.01334 -36.32415 -34.82522 -34.20822 -33.63965 -31.94962 -31.44442 -28.68039 -28.13196 -26.23191 -25.61254 -24.64222 -23.19909 -22.28961 -21.79348 -21.25946 -20.09307 -18.88233 -18.25931 -17.88020 -17.42587 -16.89221 -16.73837 -16.56180 -16.41212 -15.80890 -15.60210 -15.36589 -15.23432 -15.01758 -14.81977 -14.55954 -14.35146 -14.26538 -13.83555 -13.55472 -13.49407 -13.44046 -13.27229 -13.10646 -12.83276 -12.74301 -12.56938 -12.51491 -12.25647 -12.07114 -11.88463 -11.78772 -11.67700 -11.58237 -11.45890 -11.26856 -11.00860 -10.50785 -10.42947 -10.10741 -9.64934 -9.62265 -8.15054 -6.25189 1.34757 1.40349 1.40558 1.47364 1.53794 1.67205 2.22751 2.43708 3.17732 3.23217 3.55264 3.75098 3.80189 3.83846 3.89623 3.96759 3.99679 4.06238 4.10788 4.26292 4.30139 4.31163 4.46434 4.50130 4.62992 4.68859 4.74697 4.76384 4.80913 4.91559 4.93159 5.01878 5.05137 5.13167 5.15585 5.22604 5.23414 5.25383 5.35694 5.45236 5.55852 5.63820 5.82877 5.97381 6.07848 6.26332 6.29607 6.36798 6.54392 6.93043 6.98608 7.05991 7.42676 8.96467 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.002696 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.700096 B =10383.793078 C =11680.829397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.120 3.880 3 H 0.106 0.894 4 N -0.707 5.707 5 C 0.497 3.503 6 O -0.572 6.572 7 C 0.087 3.913 8 H 0.107 0.893 9 N -0.816 5.816 10 C -0.081 4.081 11 C 0.040 3.960 12 C -0.544 4.544 13 H 0.053 0.947 14 C 0.001 3.999 15 N -0.929 5.929 16 Si 0.960 3.040 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.510 3.490 21 O -0.556 6.556 22 N -0.600 5.600 23 C 0.084 3.916 24 C -0.132 4.132 25 C -0.119 4.119 26 C -0.126 4.126 27 C 0.139 3.861 28 H 0.081 0.919 29 C -0.132 4.132 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.413 0.587 34 H 0.348 0.652 35 H 0.347 0.653 36 H 0.045 0.955 37 H 0.058 0.942 38 H -0.008 1.008 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.052 0.948 50 H 0.045 0.955 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.621 8.830 26.543 32.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 H 0.124 0.876 4 N -0.361 5.361 5 C 0.283 3.717 6 O -0.451 6.451 7 C -0.029 4.029 8 H 0.125 0.875 9 N -0.345 5.345 10 C -0.120 4.120 11 C 0.003 3.997 12 C -0.582 4.582 13 H 0.071 0.929 14 C -0.197 4.197 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.203 1.203 20 C 0.297 3.703 21 O -0.434 6.434 22 N -0.334 5.334 23 C -0.037 4.037 24 C -0.170 4.170 25 C -0.156 4.156 26 C -0.164 4.164 27 C 0.037 3.963 28 H 0.099 0.901 29 C -0.189 4.189 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.250 0.750 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.010 0.990 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.119 8.442 25.904 31.656 hybrid contribution 0.746 -0.138 0.248 0.798 sum -15.373 8.305 26.152 31.452 Atomic orbital electron populations 1.22288 0.91062 1.03575 1.04624 1.20908 0.97064 0.97469 0.83387 0.87647 1.45964 1.66586 1.15101 1.08450 1.22293 0.76072 0.87443 0.85936 1.90620 1.52058 1.16760 1.85667 1.21585 0.97438 0.98385 0.85491 0.87524 1.58958 1.16532 1.22158 1.36831 1.21369 0.90932 0.99961 0.99718 1.18824 0.93781 0.93516 0.93597 1.21747 0.94098 1.32507 1.09825 0.92885 1.25909 1.03423 0.95274 0.95053 1.70113 1.37317 1.35432 1.14071 0.85473 0.79813 0.77972 0.78212 1.18984 1.20290 1.20348 1.20717 0.78832 0.85482 0.85247 1.90795 1.44213 1.22178 1.86260 1.48161 1.53338 1.26067 1.05793 1.22353 0.94435 0.84899 1.02017 1.21929 0.97074 1.03156 0.94819 1.21534 1.00411 0.96121 0.97550 1.21974 0.97317 0.98687 0.98420 1.21441 0.95582 0.94566 0.84721 0.90123 1.22071 1.01074 0.95890 0.99840 0.91728 0.87954 0.91282 0.74995 0.83828 0.83950 0.93633 0.92358 0.98970 0.97198 0.92879 0.88098 0.89799 0.91662 0.88304 0.90957 0.90335 0.89518 0.92381 0.92928 0.93609 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 8.99 71.98 0.65 -1.94 16 2 C 0.12 2.65 2.14 44.24 0.09 2.74 16 3 H 0.11 2.40 7.12 -2.38 -0.02 2.39 16 4 N -0.71 -19.17 5.00 -446.09 -2.23 -21.40 16 5 C 0.50 15.60 7.03 87.66 0.62 16.22 16 6 O -0.57 -19.75 15.91 -3.02 -0.05 -19.79 16 7 C 0.09 3.01 3.15 44.17 0.14 3.15 16 8 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 9 N -0.82 -27.78 8.44 -171.80 -1.45 -29.23 16 10 C -0.08 -3.47 4.78 30.59 0.15 -3.33 16 11 C 0.04 2.16 4.86 29.85 0.15 2.31 16 12 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 13 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 16 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 C 0.51 11.67 6.99 87.66 0.61 12.28 16 21 O -0.56 -16.38 11.24 -3.04 -0.03 -16.42 16 22 N -0.60 -9.96 2.97 -794.87 -2.36 -12.32 16 23 C 0.08 0.84 5.54 86.35 0.48 1.32 16 24 C -0.13 -0.85 5.97 30.67 0.18 -0.66 16 25 C -0.12 -0.79 5.88 30.62 0.18 -0.61 16 26 C -0.13 -1.32 5.37 30.67 0.16 -1.15 16 27 C 0.14 2.16 3.49 44.97 0.16 2.32 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 C -0.13 -2.75 7.60 71.98 0.55 -2.20 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.11 5.25 -2.38 -0.01 1.10 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.41 11.42 7.72 -92.71 -0.72 10.70 16 34 H 0.35 10.00 9.06 -89.69 -0.81 9.19 16 35 H 0.35 11.92 8.58 -89.69 -0.77 11.15 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 39 H 0.01 0.56 7.75 -2.39 -0.02 0.55 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.10 0.93 4.11 -2.39 -0.01 0.92 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 0.50 8.11 -2.39 -0.02 0.48 16 44 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 45 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 46 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.05 1.29 6.82 -2.38 -0.02 1.27 16 50 H 0.04 1.22 6.70 -2.38 -0.02 1.21 16 51 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -73.73 395.33 -0.36 -74.09 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -1.35 Total: 35.70 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.81 Total: -0.83 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -5.76 Total: -120.56 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.08 Total: -36.21 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.73 -0.36 -74.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.428 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds