Wall clock time and date at job start Fri Apr 10 2020 18:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46917 * 2 1 4 4 N 1.46493 * 109.47221 * 239.99633 * 2 1 3 5 5 C 1.34784 * 119.99857 * 85.00384 * 4 2 1 6 6 O 1.21280 * 119.99943 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00172 * 179.97438 * 5 4 2 8 8 H 1.08999 * 109.46734 * 39.99884 * 7 5 4 9 9 N 1.46895 * 109.47262 * 159.99474 * 7 5 4 10 10 C 1.52994 * 109.47040 * 279.99959 * 7 5 4 11 11 C 1.52998 * 109.47006 * 174.99919 * 10 7 5 12 12 C 1.50700 * 109.47097 * 179.97438 * 11 10 7 13 13 H 1.08002 * 120.00245 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00195 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99990 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00213 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47060 * 90.00453 * 16 14 12 18 18 H 1.48496 * 109.47054 * 210.00303 * 16 14 12 19 19 H 1.48502 * 109.47039 * 330.00281 * 16 14 12 20 20 C 1.50706 * 109.47058 * 119.99799 * 2 1 3 21 21 O 1.21283 * 120.00050 * 105.00789 * 20 2 1 22 22 N 1.34775 * 120.00155 * 285.01026 * 20 2 1 23 23 C 1.46928 * 120.63042 * 5.67789 * 22 20 2 24 24 C 1.52757 * 109.00518 * 233.58336 * 23 22 20 25 25 C 1.53038 * 109.38616 * 305.58363 * 24 23 22 26 26 C 1.53038 * 109.53491 * 61.23980 * 25 24 23 27 27 C 1.46921 * 120.63089 * 185.95379 * 22 20 2 28 28 H 1.09013 * 109.58676 * 246.30031 * 27 22 20 29 29 C 1.53001 * 109.58934 * 6.58155 * 27 22 20 30 30 H 1.08996 * 109.47227 * 64.86177 * 1 2 3 31 31 H 1.09005 * 109.47130 * 184.86402 * 1 2 3 32 32 H 1.09003 * 109.47175 * 304.85856 * 1 2 3 33 33 H 0.97001 * 120.00387 * 264.99905 * 4 2 1 34 34 H 1.00899 * 111.00200 * 296.05067 * 9 7 5 35 35 H 1.00906 * 110.99802 * 60.00103 * 9 7 5 36 36 H 1.09002 * 109.47705 * 54.99848 * 10 7 5 37 37 H 1.09002 * 109.46844 * 294.99921 * 10 7 5 38 38 H 1.09003 * 109.47266 * 60.00175 * 11 10 7 39 39 H 1.09002 * 109.47320 * 299.99709 * 11 10 7 40 40 H 0.97001 * 120.00245 * 179.97438 * 15 14 12 41 41 H 1.09005 * 109.58489 * 353.41655 * 23 22 20 42 42 H 1.08993 * 109.58912 * 113.83894 * 23 22 20 43 43 H 1.09011 * 109.56256 * 185.54899 * 24 23 22 44 44 H 1.09001 * 109.38894 * 65.51700 * 24 23 22 45 45 H 1.09007 * 109.45944 * 301.22488 * 25 24 23 46 46 H 1.08996 * 109.46104 * 181.26259 * 25 24 23 47 47 H 1.09004 * 109.49828 * 178.68473 * 26 25 24 48 48 H 1.09001 * 109.52179 * 58.60667 * 26 25 24 49 49 H 1.08995 * 109.46885 * 52.69073 * 29 27 22 50 50 H 1.08996 * 109.47149 * 172.69276 * 29 27 22 51 51 H 1.09004 * 109.47049 * 292.69544 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6500 -0.7286 -3.5874 8 1 2.2158 -1.7272 -3.6333 9 7 2.2614 0.0298 -4.7839 10 6 4.1748 -0.8378 -3.5257 11 6 4.6751 -1.6666 -4.7105 12 6 6.1770 -1.7737 -4.6501 13 1 6.7205 -1.2985 -3.8468 14 6 6.8575 -2.4792 -5.6198 15 7 6.1958 -3.0583 -6.5978 16 14 8.7192 -2.6125 -5.5446 17 1 9.0980 -3.8132 -4.7573 18 1 9.2629 -2.7315 -6.9213 19 1 9.2765 -1.3987 -4.8954 20 6 2.0323 -0.7104 1.2305 21 8 2.4909 -1.8295 1.1400 22 7 1.9720 -0.1021 2.4317 23 6 1.3078 1.2002 2.5788 24 6 2.2737 2.1790 3.2438 25 6 2.7800 1.5794 4.5577 26 6 3.5308 0.2772 4.2702 27 6 2.5743 -0.7258 3.6178 28 1 1.7907 -0.9995 4.3245 29 6 3.3494 -1.9775 3.2013 30 1 -0.3633 0.4365 -0.9303 31 1 -0.3634 -1.0240 0.0871 32 1 -0.3634 0.5874 0.8433 33 1 2.2491 -1.6318 -1.1525 34 1 1.2577 0.0610 -4.8821 35 1 2.6519 0.9601 -4.7651 36 1 4.4671 -1.3224 -2.5941 37 1 4.6125 0.1595 -3.5693 38 1 4.3829 -1.1819 -5.6421 39 1 4.2373 -2.6639 -4.6669 40 1 6.6745 -3.5543 -7.2803 41 1 1.0245 1.5789 1.5966 42 1 0.4191 1.0891 3.2000 43 1 1.7592 3.1183 3.4470 44 1 3.1175 2.3629 2.5788 45 1 1.9335 1.3734 5.2129 46 1 3.4520 2.2863 5.0443 47 1 3.9112 -0.1372 5.2039 48 1 4.3631 0.4780 3.5955 49 1 4.0479 -1.7238 2.4040 50 1 3.9009 -2.3651 4.0579 51 1 2.6515 -2.7354 2.8454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424111653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:03 Heat of formation + Delta-G solvation = -79.677556 kcal Electronic energy + Delta-G solvation = -28927.483719 eV Core-core repulsion = 25054.322663 eV Total energy + Delta-G solvation = -3873.161056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.15681 -39.68155 -37.80754 -35.65893 -34.96915 -33.42783 -32.99073 -32.75845 -30.60940 -30.02725 -27.94454 -26.44050 -25.36390 -24.50677 -23.47883 -22.32522 -21.16873 -20.46280 -19.96059 -19.32599 -17.65991 -16.92686 -16.38482 -16.26434 -16.10017 -15.53507 -15.30405 -14.98711 -14.66504 -14.57600 -14.36876 -14.27820 -13.91921 -13.80792 -13.55202 -13.38052 -12.91775 -12.82871 -12.53049 -12.27776 -12.24503 -12.02237 -11.98888 -11.85793 -11.49931 -11.41547 -11.39171 -11.11252 -10.98150 -10.85967 -10.64421 -10.52348 -10.13426 -9.76002 -9.43883 -9.33378 -9.11428 -8.95679 -8.92245 -8.33542 -8.18155 -5.89902 -3.91707 2.25614 2.46900 2.76553 3.28068 3.37886 3.43877 3.47552 4.02987 4.27347 4.39260 4.44790 4.53677 4.59462 4.75126 4.81919 4.83345 4.91232 4.93163 5.01477 5.10096 5.17393 5.25037 5.32944 5.39654 5.43448 5.45653 5.50864 5.55019 5.57381 5.60986 5.64514 5.82079 5.83447 5.87646 5.99963 6.06637 6.35464 6.41465 6.50204 6.69171 7.03005 7.13444 7.38954 7.60962 7.80193 7.82177 7.85006 8.00590 8.17067 8.28953 8.52819 9.16132 9.71157 11.21089 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.002899 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.104800 B = 9657.464450 C =10891.058799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 H 0.107 0.893 4 N -0.714 5.714 5 C 0.488 3.512 6 O -0.556 6.556 7 C 0.080 3.920 8 H 0.100 0.900 9 N -0.806 5.806 10 C -0.095 4.095 11 C 0.032 3.968 12 C -0.521 4.521 13 H 0.052 0.948 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.515 3.485 21 O -0.520 6.520 22 N -0.606 5.606 23 C 0.100 3.900 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.134 4.134 27 C 0.145 3.855 28 H 0.071 0.929 29 C -0.141 4.141 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.413 0.587 34 H 0.334 0.666 35 H 0.348 0.652 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.045 0.955 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.971 8.816 23.938 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.125 0.875 4 N -0.369 5.369 5 C 0.274 3.726 6 O -0.434 6.434 7 C -0.036 4.036 8 H 0.117 0.883 9 N -0.333 5.333 10 C -0.134 4.134 11 C -0.006 4.006 12 C -0.560 4.560 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C 0.302 3.698 21 O -0.396 6.396 22 N -0.341 5.341 23 C -0.023 4.023 24 C -0.177 4.177 25 C -0.157 4.157 26 C -0.172 4.172 27 C 0.042 3.958 28 H 0.089 0.911 29 C -0.198 4.198 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.250 0.750 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.064 0.936 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.494 8.378 23.250 28.157 hybrid contribution 0.653 0.261 0.897 1.140 sum -12.841 8.639 24.146 28.681 Atomic orbital electron populations 1.22191 0.92996 1.03107 1.03533 1.20753 0.95624 0.98037 0.84396 0.87534 1.46027 1.67485 1.15136 1.08260 1.22833 0.75943 0.87943 0.85843 1.90628 1.51018 1.16294 1.85422 1.21835 0.99973 0.97519 0.84238 0.88262 1.59004 1.15273 1.22254 1.36796 1.21663 0.88195 1.01563 1.01956 1.19013 0.94773 0.94165 0.92600 1.21285 0.92544 1.32452 1.09687 0.93014 1.24988 0.98080 0.95760 0.95513 1.69976 1.35267 1.34689 1.13306 0.86650 0.86179 0.78344 0.77141 1.20769 1.21279 1.19997 1.20644 0.78334 0.86456 0.84331 1.90780 1.44986 1.18502 1.85351 1.48086 1.56850 1.21134 1.08052 1.21852 0.95355 0.82736 1.02317 1.21878 0.99957 0.98365 0.97500 1.21517 1.00231 0.96943 0.97043 1.22036 0.98516 0.95486 1.01147 1.21311 0.95050 0.93393 0.86038 0.91081 1.22215 1.00901 0.96386 1.00325 0.90678 0.91676 0.91140 0.74972 0.85470 0.83843 0.92713 0.92903 0.94663 0.96822 0.93129 0.89095 0.90911 0.90377 0.91179 0.91736 0.91480 0.90617 0.91243 0.91318 0.93590 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.15 37.16 0.34 -1.13 16 2 C 0.12 1.38 2.12 -69.08 -0.15 1.24 16 3 H 0.11 1.27 6.57 -51.93 -0.34 0.93 16 4 N -0.71 -9.75 5.03 -54.93 -0.28 -10.03 16 5 C 0.49 7.73 7.03 -10.98 -0.08 7.65 16 6 O -0.56 -9.77 15.91 5.56 0.09 -9.68 16 7 C 0.08 1.38 3.15 -68.87 -0.22 1.16 16 8 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 9 N -0.81 -13.65 8.44 -5.66 -0.05 -13.69 16 10 C -0.10 -1.99 4.78 -26.73 -0.13 -2.12 16 11 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 12 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 16 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.52 5.99 6.81 -10.98 -0.07 5.92 16 21 O -0.52 -7.45 11.44 5.55 0.06 -7.38 16 22 N -0.61 -5.46 2.98 -165.48 -0.49 -5.95 16 23 C 0.10 0.63 5.42 -3.93 -0.02 0.61 16 24 C -0.14 -0.81 6.06 -26.84 -0.16 -0.97 16 25 C -0.12 -0.66 5.89 -26.69 -0.16 -0.82 16 26 C -0.13 -0.94 5.37 -26.61 -0.14 -1.08 16 27 C 0.14 1.22 3.49 -67.60 -0.24 0.98 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 29 C -0.14 -1.48 7.61 37.16 0.28 -1.20 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.48 6.14 -51.93 -0.32 0.16 16 33 H 0.41 5.67 7.72 -40.82 -0.31 5.35 16 34 H 0.33 4.85 9.06 -39.29 -0.36 4.49 16 35 H 0.35 5.93 8.58 -39.29 -0.34 5.60 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.03 0.99 7.75 -51.93 -0.40 0.59 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.09 0.56 4.63 -51.93 -0.24 0.32 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.34 8.14 -51.92 -0.42 -0.09 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.89 6.85 -51.93 -0.36 0.53 16 50 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.08 0.95 6.65 -51.93 -0.35 0.60 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -33.59 396.38 -9.16 -42.75 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -8.89 Total: 10.36 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.29 Total: -2.86 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.08 Total: -56.32 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.15 Total: -17.06 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.59 -9.16 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424111653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.926 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds