Wall clock time and date at job start Fri Apr 10 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46972 * 2 1 4 4 N 1.46504 * 109.47165 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00146 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99947 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.99811 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.50251 * 59.93856 * 7 5 4 9 9 C 1.53037 * 109.52712 * 299.85387 * 7 5 4 10 10 C 1.53036 * 109.53986 * 178.66717 * 9 7 5 11 11 C 1.52760 * 109.38448 * 61.24593 * 10 9 7 12 12 N 1.46930 * 109.00432 * 305.58557 * 11 10 9 13 13 C 1.34776 * 120.63217 * 233.58513 * 12 11 10 14 14 O 1.21279 * 120.00032 * 179.72810 * 13 12 11 15 15 C 1.50698 * 119.99790 * 359.71414 * 13 12 11 16 16 H 1.09008 * 109.46977 * 40.00639 * 15 13 12 17 17 N 1.46904 * 109.46837 * 159.99896 * 15 13 12 18 18 C 1.52997 * 109.47721 * 280.00489 * 15 13 12 19 19 C 1.53000 * 109.47060 * 175.00208 * 18 15 13 20 20 C 1.50706 * 109.46735 * 180.02562 * 19 18 15 21 21 H 1.07996 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99611 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99711 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00219 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46794 * 90.00022 * 24 22 20 26 26 H 1.48502 * 109.47140 * 210.00005 * 24 22 20 27 27 H 1.48501 * 109.46982 * 330.00118 * 24 22 20 28 28 C 1.46928 * 118.73614 * 53.31403 * 12 11 10 29 29 H 1.09001 * 109.47713 * 59.99637 * 1 2 3 30 30 H 1.08998 * 109.47350 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47117 * 299.99985 * 1 2 3 32 32 H 1.09001 * 109.46985 * 240.00461 * 2 1 3 33 33 H 1.08996 * 109.46869 * 120.00115 * 2 1 3 34 34 H 1.09007 * 109.47187 * 60.00058 * 3 2 1 35 35 H 1.09002 * 109.47707 * 300.00108 * 3 2 1 36 36 H 0.97000 * 119.99501 * 0.02562 * 4 3 2 37 37 H 1.09002 * 109.46455 * 298.69277 * 9 7 5 38 38 H 1.09008 * 109.45783 * 58.65936 * 9 7 5 39 39 H 1.09005 * 109.49760 * 181.32017 * 10 9 7 40 40 H 1.08999 * 109.50241 * 301.38530 * 10 9 7 41 41 H 1.08997 * 109.51405 * 185.70506 * 11 10 9 42 42 H 1.08996 * 109.43245 * 65.41823 * 11 10 9 43 43 H 1.00898 * 110.99372 * 60.01160 * 17 15 13 44 44 H 1.00904 * 110.99944 * 183.95594 * 17 15 13 45 45 H 1.09002 * 109.47153 * 54.99889 * 18 15 13 46 46 H 1.09001 * 109.46832 * 295.00079 * 18 15 13 47 47 H 1.09001 * 109.47194 * 299.99650 * 19 18 15 48 48 H 1.08992 * 109.47399 * 59.99823 * 19 18 15 49 49 H 0.97000 * 119.99684 * 179.97438 * 23 22 20 50 50 H 1.08994 * 109.59168 * 66.42431 * 28 12 11 51 51 H 1.09007 * 109.58459 * 186.85486 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1789 2.6098 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6858 2.6097 0.0003 8 1 6.0497 2.0947 -0.8888 9 6 6.1973 1.8922 1.2515 10 6 7.7273 1.8628 1.2353 11 6 8.2620 3.2937 1.2456 12 7 7.6605 4.0374 0.1303 13 6 8.4366 4.6874 -0.7594 14 8 7.9281 5.2937 -1.6786 15 6 9.9361 4.6613 -0.6119 16 1 10.2537 3.6645 -0.3055 17 7 10.5606 5.0005 -1.8976 18 6 10.3624 5.6802 0.4468 19 6 11.8693 5.5668 0.6862 20 6 12.2890 6.5700 1.7295 21 1 11.5545 7.2234 2.1767 22 6 13.6107 6.6537 2.1131 23 7 13.9771 7.5295 3.0232 24 14 14.8810 5.5230 1.3401 25 1 15.4492 6.1705 0.1306 26 1 15.9679 5.2585 2.3169 27 1 14.2357 4.2411 0.9585 28 6 6.1971 4.0539 -0.0001 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9899 0.6025 0.0006 37 1 5.8536 2.4219 2.1400 38 1 5.8148 0.8715 1.2667 39 1 8.0903 1.3311 2.1149 40 1 8.0719 1.3543 0.3349 41 1 9.3459 3.2782 1.1321 42 1 7.9981 3.7726 2.1886 43 1 10.2816 5.9207 -2.2033 44 1 11.5654 4.9271 -1.8421 45 1 9.8306 5.4814 1.3773 46 1 10.1243 6.6858 0.0999 47 1 12.1074 4.5612 1.0331 48 1 12.4010 5.7655 -0.2442 49 1 14.9069 7.5881 3.2933 50 1 5.7615 4.5959 0.8391 51 1 5.9191 4.5396 -0.9355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424112925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:47 Heat of formation + Delta-G solvation = -97.914657 kcal Electronic energy + Delta-G solvation = -28234.515557 eV Core-core repulsion = 24360.563681 eV Total energy + Delta-G solvation = -3873.951876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 3.64 seconds Orbital eigenvalues (eV) -40.76732 -39.68546 -37.37067 -36.16676 -35.67181 -33.53390 -32.82897 -32.55446 -31.45562 -30.32377 -27.52098 -26.63181 -25.49969 -24.26034 -23.06638 -22.13796 -21.65661 -20.45671 -19.99599 -18.92709 -17.74143 -17.04330 -16.73277 -16.57239 -16.21736 -15.80692 -15.29868 -14.96230 -14.66490 -14.61767 -14.31162 -14.23246 -14.04206 -13.73191 -13.46372 -13.36264 -13.14464 -12.89167 -12.74567 -12.66675 -12.58660 -12.49119 -11.96634 -11.76310 -11.66366 -11.42179 -11.39528 -11.29827 -11.14289 -10.97621 -10.88088 -10.32885 -10.11495 -10.02390 -9.87695 -9.45169 -9.34684 -9.31900 -8.64742 -8.62671 -8.31552 -6.12111 -4.11694 2.34558 2.64924 2.87290 3.12523 3.24126 3.32304 3.33019 4.23656 4.31112 4.36710 4.40274 4.44484 4.48841 4.68172 4.72160 4.80301 4.85640 5.02117 5.07671 5.11045 5.12158 5.20470 5.22603 5.28233 5.32629 5.42858 5.49807 5.54101 5.59323 5.60389 5.61484 5.67864 5.69392 5.76725 5.88244 5.99461 6.07465 6.13455 6.32365 6.49842 6.64831 7.08162 7.10325 7.20578 7.29689 7.53210 7.66137 7.77720 7.89890 8.37666 8.44438 8.92236 9.48980 11.01099 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.026370 B = 0.002228 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.554561 B =12564.762766 C =12879.945665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.733 5.733 5 C 0.522 3.478 6 O -0.534 6.534 7 C -0.122 4.122 8 H 0.102 0.898 9 C -0.109 4.109 10 C -0.134 4.134 11 C 0.099 3.901 12 N -0.615 5.615 13 C 0.529 3.471 14 O -0.534 6.534 15 C 0.071 3.929 16 H 0.098 0.902 17 N -0.831 5.831 18 C -0.131 4.131 19 C -0.010 4.010 20 C -0.524 4.524 21 H 0.071 0.929 22 C 0.067 3.933 23 N -0.900 5.900 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.265 1.265 28 C 0.133 3.867 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.400 0.600 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.348 0.652 44 H 0.350 0.650 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.018 0.982 48 H 0.011 0.989 49 H 0.264 0.736 50 H 0.075 0.925 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.246 -19.993 -4.159 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.386 5.386 5 C 0.308 3.692 6 O -0.410 6.410 7 C -0.144 4.144 8 H 0.120 0.880 9 C -0.147 4.147 10 C -0.172 4.172 11 C -0.024 4.024 12 N -0.350 5.350 13 C 0.318 3.682 14 O -0.410 6.410 15 C -0.044 4.044 16 H 0.115 0.885 17 N -0.363 5.363 18 C -0.171 4.171 19 C -0.047 4.047 20 C -0.561 4.561 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.539 5.539 24 Si 0.708 3.292 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.190 1.190 28 C 0.010 3.990 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.235 0.765 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.036 0.964 48 H 0.030 0.970 49 H 0.074 0.926 50 H 0.093 0.907 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.205 -19.427 -4.863 29.902 hybrid contribution 1.435 -0.246 0.369 1.502 sum -20.770 -19.673 -4.493 28.959 Atomic orbital electron populations 1.21682 0.94477 1.02215 1.02433 1.21738 0.97095 0.95795 1.02749 1.21420 0.79539 0.97161 1.02581 1.46027 1.07351 1.08776 1.76411 1.20530 0.89718 0.83545 0.75407 1.90738 1.70363 1.31229 1.48631 1.21708 0.91378 0.99988 1.01333 0.88004 1.21522 0.96411 1.00126 0.96641 1.21866 0.94831 0.97183 1.03358 1.21815 0.99489 0.91233 0.89840 1.48053 1.06101 1.52444 1.28374 1.20795 0.89459 0.77545 0.80443 1.90642 1.75407 1.42787 1.32149 1.21553 0.89937 1.01334 0.91530 0.88460 1.58757 1.13807 1.36397 1.27331 1.22232 0.99896 0.97750 0.97235 1.19569 0.90648 0.97597 0.96892 1.21066 0.94574 1.19061 1.21438 0.91051 1.25044 0.98494 0.95199 0.94693 1.69913 1.17492 1.35377 1.31084 0.86776 0.81332 0.81835 0.79293 1.20240 1.21337 1.18983 1.21236 0.79424 0.93636 1.04687 0.92300 0.92136 0.92285 0.91287 0.91263 0.91418 0.91442 0.76539 0.90885 0.91292 0.89833 0.91080 0.88506 0.90765 0.83804 0.83544 0.91735 0.92001 0.96404 0.97049 0.92639 0.90665 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.14 -0.56 6.05 -26.73 -0.16 -0.72 16 3 C 0.12 0.78 5.67 -4.04 -0.02 0.76 16 4 N -0.73 -5.15 5.44 -60.29 -0.33 -5.48 16 5 C 0.52 5.43 7.16 -10.99 -0.08 5.35 16 6 O -0.53 -7.83 15.92 5.55 0.09 -7.74 16 7 C -0.12 -1.14 2.67 -91.65 -0.25 -1.39 16 8 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 9 C -0.11 -0.77 5.08 -26.69 -0.14 -0.90 16 10 C -0.13 -1.01 6.06 -26.84 -0.16 -1.18 16 11 C 0.10 1.05 5.56 -3.93 -0.02 1.03 16 12 N -0.62 -8.23 2.98 -173.03 -0.52 -8.74 16 13 C 0.53 8.79 6.95 -10.99 -0.08 8.71 16 14 O -0.53 -10.61 15.66 5.56 0.09 -10.53 16 15 C 0.07 1.15 2.35 -68.86 -0.16 0.99 16 16 H 0.10 1.41 6.53 -51.92 -0.34 1.08 16 17 N -0.83 -13.49 8.94 -5.65 -0.05 -13.54 16 18 C -0.13 -2.47 4.55 -26.73 -0.12 -2.59 16 19 C -0.01 -0.21 3.81 -27.88 -0.11 -0.32 16 20 C -0.52 -14.39 9.66 -34.44 -0.33 -14.73 16 21 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 22 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 23 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 24 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 28 C 0.13 1.72 5.07 -3.71 -0.02 1.70 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.40 1.71 7.89 -40.82 -0.32 1.39 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.33 7.54 -51.92 -0.39 -0.06 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.10 1.08 5.20 -51.93 -0.27 0.81 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16 44 H 0.35 5.42 7.55 -39.29 -0.30 5.12 16 45 H 0.06 1.18 7.22 -51.93 -0.37 0.81 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 48 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 51 H 0.10 1.51 7.01 -51.93 -0.36 1.15 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -34.69 398.26 -8.88 -43.57 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.89 Total: 8.39 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.38 Total: -1.69 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.12 Total: -54.20 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.18 Total: -18.27 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.69 -8.88 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424112925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.342 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds