Wall clock time and date at job start Fri Apr 10 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46972 * 2 1 4 4 N 1.46504 * 109.47165 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00146 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99947 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.99811 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.50251 * 59.93856 * 7 5 4 9 9 C 1.53037 * 109.52712 * 299.85387 * 7 5 4 10 10 C 1.53036 * 109.53986 * 178.66717 * 9 7 5 11 11 C 1.52760 * 109.38448 * 61.24593 * 10 9 7 12 12 N 1.46930 * 109.00432 * 305.58557 * 11 10 9 13 13 C 1.34776 * 120.63217 * 233.58513 * 12 11 10 14 14 O 1.21279 * 120.00032 * 179.72810 * 13 12 11 15 15 C 1.50698 * 119.99790 * 359.71414 * 13 12 11 16 16 H 1.09008 * 109.46977 * 40.00639 * 15 13 12 17 17 N 1.46904 * 109.46837 * 159.99896 * 15 13 12 18 18 C 1.52997 * 109.47721 * 280.00489 * 15 13 12 19 19 C 1.53000 * 109.47060 * 175.00208 * 18 15 13 20 20 C 1.50706 * 109.46735 * 180.02562 * 19 18 15 21 21 H 1.07996 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99611 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99711 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00219 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46794 * 90.00022 * 24 22 20 26 26 H 1.48502 * 109.47140 * 210.00005 * 24 22 20 27 27 H 1.48501 * 109.46982 * 330.00118 * 24 22 20 28 28 C 1.46928 * 118.73614 * 53.31403 * 12 11 10 29 29 H 1.09001 * 109.47713 * 59.99637 * 1 2 3 30 30 H 1.08998 * 109.47350 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47117 * 299.99985 * 1 2 3 32 32 H 1.09001 * 109.46985 * 240.00461 * 2 1 3 33 33 H 1.08996 * 109.46869 * 120.00115 * 2 1 3 34 34 H 1.09007 * 109.47187 * 60.00058 * 3 2 1 35 35 H 1.09002 * 109.47707 * 300.00108 * 3 2 1 36 36 H 0.97000 * 119.99501 * 0.02562 * 4 3 2 37 37 H 1.09002 * 109.46455 * 298.69277 * 9 7 5 38 38 H 1.09008 * 109.45783 * 58.65936 * 9 7 5 39 39 H 1.09005 * 109.49760 * 181.32017 * 10 9 7 40 40 H 1.08999 * 109.50241 * 301.38530 * 10 9 7 41 41 H 1.08997 * 109.51405 * 185.70506 * 11 10 9 42 42 H 1.08996 * 109.43245 * 65.41823 * 11 10 9 43 43 H 1.00898 * 110.99372 * 60.01160 * 17 15 13 44 44 H 1.00904 * 110.99944 * 183.95594 * 17 15 13 45 45 H 1.09002 * 109.47153 * 54.99889 * 18 15 13 46 46 H 1.09001 * 109.46832 * 295.00079 * 18 15 13 47 47 H 1.09001 * 109.47194 * 299.99650 * 19 18 15 48 48 H 1.08992 * 109.47399 * 59.99823 * 19 18 15 49 49 H 0.97000 * 119.99684 * 179.97438 * 23 22 20 50 50 H 1.08994 * 109.59168 * 66.42431 * 28 12 11 51 51 H 1.09007 * 109.58459 * 186.85486 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1789 2.6098 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6858 2.6097 0.0003 8 1 6.0497 2.0947 -0.8888 9 6 6.1973 1.8922 1.2515 10 6 7.7273 1.8628 1.2353 11 6 8.2620 3.2937 1.2456 12 7 7.6605 4.0374 0.1303 13 6 8.4366 4.6874 -0.7594 14 8 7.9281 5.2937 -1.6786 15 6 9.9361 4.6613 -0.6119 16 1 10.2537 3.6645 -0.3055 17 7 10.5606 5.0005 -1.8976 18 6 10.3624 5.6802 0.4468 19 6 11.8693 5.5668 0.6862 20 6 12.2890 6.5700 1.7295 21 1 11.5545 7.2234 2.1767 22 6 13.6107 6.6537 2.1131 23 7 13.9771 7.5295 3.0232 24 14 14.8810 5.5230 1.3401 25 1 15.4492 6.1705 0.1306 26 1 15.9679 5.2585 2.3169 27 1 14.2357 4.2411 0.9585 28 6 6.1971 4.0539 -0.0001 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9899 0.6025 0.0006 37 1 5.8536 2.4219 2.1400 38 1 5.8148 0.8715 1.2667 39 1 8.0903 1.3311 2.1149 40 1 8.0719 1.3543 0.3349 41 1 9.3459 3.2782 1.1321 42 1 7.9981 3.7726 2.1886 43 1 10.2816 5.9207 -2.2033 44 1 11.5654 4.9271 -1.8421 45 1 9.8306 5.4814 1.3773 46 1 10.1243 6.6858 0.0999 47 1 12.1074 4.5612 1.0331 48 1 12.4010 5.7655 -0.2442 49 1 14.9069 7.5881 3.2933 50 1 5.7615 4.5959 0.8391 51 1 5.9191 4.5396 -0.9355 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424112925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:43 Heat of formation + Delta-G solvation = -124.433074 kcal Electronic energy + Delta-G solvation = -28235.665481 eV Core-core repulsion = 24360.563681 eV Total energy + Delta-G solvation = -3875.101801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.75326 -40.73398 -38.35755 -37.18605 -36.80934 -34.83922 -34.35363 -33.22318 -32.30421 -32.07164 -28.80117 -27.45189 -26.66456 -25.34978 -24.25380 -22.64165 -22.57058 -21.91831 -20.92080 -20.03206 -19.11931 -18.58385 -17.91928 -17.32103 -16.98326 -16.81612 -16.25498 -16.17179 -15.99924 -15.74893 -15.49032 -15.32875 -15.14722 -14.73973 -14.63002 -14.51312 -14.26153 -13.89413 -13.84338 -13.64566 -13.55976 -13.37005 -13.06971 -12.94387 -12.69858 -12.53576 -12.13608 -12.06481 -12.00579 -11.94168 -11.87536 -11.75750 -11.65731 -11.64292 -11.40211 -10.92011 -10.76586 -10.67411 -10.15291 -9.76340 -9.64274 -8.28390 -6.34323 1.40274 1.41322 1.52818 1.53326 1.54249 1.75487 2.27290 2.37703 3.07192 3.38426 3.55688 3.66830 3.76634 3.79279 3.91800 4.01735 4.04543 4.07358 4.11914 4.18241 4.22190 4.35103 4.49496 4.55567 4.60989 4.65556 4.67838 4.75610 4.79735 4.82847 4.86985 4.92455 4.94126 5.06410 5.07581 5.15110 5.24234 5.31689 5.35936 5.36436 5.46099 5.46595 5.47949 5.63328 6.02659 6.26187 6.33681 6.48193 6.48596 6.74124 7.11082 7.18937 7.30445 8.88459 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.026370 B = 0.002228 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.554561 B =12564.762766 C =12879.945665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.115 3.885 4 N -0.713 5.713 5 C 0.520 3.480 6 O -0.586 6.586 7 C -0.110 4.110 8 H 0.114 0.886 9 C -0.104 4.104 10 C -0.126 4.126 11 C 0.087 3.913 12 N -0.606 5.606 13 C 0.522 3.478 14 O -0.576 6.576 15 C 0.084 3.916 16 H 0.125 0.875 17 N -0.830 5.830 18 C -0.120 4.120 19 C -0.003 4.003 20 C -0.535 4.535 21 H 0.023 0.977 22 C 0.002 3.998 23 N -0.953 5.953 24 Si 0.954 3.046 25 H -0.270 1.270 26 H -0.288 1.288 27 H -0.232 1.232 28 C 0.133 3.867 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.418 0.582 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.344 0.656 44 H 0.356 0.644 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.037 0.963 48 H 0.023 0.977 49 H 0.266 0.734 50 H 0.064 0.936 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.753 -24.558 -4.580 32.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.366 5.366 5 C 0.307 3.693 6 O -0.466 6.466 7 C -0.132 4.132 8 H 0.132 0.868 9 C -0.142 4.142 10 C -0.163 4.163 11 C -0.034 4.034 12 N -0.339 5.339 13 C 0.311 3.689 14 O -0.455 6.455 15 C -0.031 4.031 16 H 0.143 0.857 17 N -0.362 5.362 18 C -0.160 4.160 19 C -0.041 4.041 20 C -0.573 4.573 21 H 0.042 0.958 22 C -0.195 4.195 23 N -0.594 5.594 24 Si 0.777 3.223 25 H -0.196 1.196 26 H -0.214 1.214 27 H -0.155 1.155 28 C 0.010 3.990 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.255 0.745 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.093 0.907 43 H 0.157 0.843 44 H 0.171 0.829 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.041 0.959 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.735 -24.081 -5.262 32.863 hybrid contribution 1.170 1.269 0.579 1.820 sum -20.565 -22.812 -4.684 31.068 Atomic orbital electron populations 1.21705 0.94436 1.02798 1.02077 1.21682 0.97020 0.93746 1.03873 1.21476 0.79166 0.98949 1.01320 1.45887 1.07615 1.08563 1.74527 1.20736 0.90163 0.83635 0.74801 1.90723 1.71317 1.33237 1.51311 1.21600 0.90604 0.97599 1.03404 0.86788 1.21564 0.96260 1.01606 0.94745 1.21854 0.94730 0.94737 1.05020 1.22125 0.99539 0.93178 0.88595 1.48106 1.06134 1.51532 1.28143 1.20928 0.89876 0.77501 0.80581 1.90625 1.76031 1.44692 1.34168 1.21462 0.89721 1.01528 0.90427 0.85733 1.58773 1.14233 1.36111 1.27066 1.22050 0.98122 0.97530 0.98299 1.19486 0.92492 0.96622 0.95479 1.21425 0.93928 1.19498 1.22447 0.95823 1.26098 1.01148 0.97046 0.95168 1.70090 1.18184 1.37848 1.33253 0.85602 0.77914 0.80633 0.78142 1.19564 1.21398 1.15462 1.21158 0.79210 0.96168 1.02505 0.92814 0.91027 0.92612 0.90270 0.89903 0.92575 0.93005 0.74454 0.91381 0.87711 0.87239 0.90220 0.88544 0.90685 0.84340 0.82866 0.91687 0.94474 0.94471 0.95873 0.92553 0.91756 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 71.98 0.71 -0.25 16 2 C -0.13 -0.74 6.05 30.59 0.19 -0.55 16 3 C 0.11 1.42 5.67 86.38 0.49 1.91 16 4 N -0.71 -8.64 5.44 -463.05 -2.52 -11.16 16 5 C 0.52 10.47 7.16 87.66 0.63 11.09 16 6 O -0.59 -17.85 15.92 -3.04 -0.05 -17.90 16 7 C -0.11 -1.89 2.67 -11.46 -0.03 -1.92 16 8 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 9 C -0.10 -1.10 5.08 30.62 0.16 -0.95 16 10 C -0.13 -1.38 6.06 30.53 0.19 -1.20 16 11 C 0.09 1.66 5.56 86.22 0.48 2.14 16 12 N -0.61 -15.85 2.98 -819.73 -2.44 -18.29 16 13 C 0.52 17.26 6.95 87.66 0.61 17.87 16 14 O -0.58 -23.50 15.66 -3.03 -0.05 -23.55 16 15 C 0.08 2.57 2.35 44.17 0.10 2.67 16 16 H 0.13 3.18 6.53 -2.38 -0.02 3.16 16 17 N -0.83 -25.71 8.94 -171.79 -1.54 -27.24 16 18 C -0.12 -4.47 4.55 30.59 0.14 -4.34 16 19 C 0.00 -0.14 3.81 29.85 0.11 -0.03 16 20 C -0.54 -29.87 9.66 25.60 0.25 -29.63 16 21 H 0.02 1.49 7.99 -2.91 -0.02 1.46 16 22 C 0.00 0.11 5.47 84.66 0.46 0.58 16 23 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 24 Si 0.95 41.83 27.47 68.60 1.88 43.72 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.23 -8.87 6.54 99.48 0.65 -8.22 16 28 C 0.13 3.50 5.07 86.36 0.44 3.94 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.42 2.09 7.89 -92.71 -0.73 1.36 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.44 7.54 -2.38 -0.02 0.42 16 39 H 0.11 0.75 8.14 -2.38 -0.02 0.74 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.10 1.85 5.20 -2.39 -0.01 1.84 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.34 11.41 8.58 -89.70 -0.77 10.65 16 44 H 0.36 10.12 7.55 -89.69 -0.68 9.45 16 45 H 0.06 2.38 7.22 -2.39 -0.02 2.36 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.04 1.46 7.20 -2.39 -0.02 1.44 16 48 H 0.02 0.94 6.30 -2.39 -0.02 0.92 16 49 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 50 H 0.06 1.81 7.96 -2.39 -0.02 1.79 16 51 H 0.06 2.15 7.01 -2.38 -0.02 2.13 16 Total: -1.00 -80.16 398.26 -0.78 -80.94 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -1.29 Total: 30.93 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.92 Total: 1.34 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -6.20 Total: -115.48 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.10 Total: -41.45 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.72 kcal Total: -80.16 -0.78 -80.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424112925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.491 kcal (2) G-P(sol) polarization free energy of solvation -80.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds