Wall clock time and date at job start Fri Apr 10 2020 18:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 N 1.46506 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99969 * 179.72043 * 4 3 2 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 3 8 8 H 1.08999 * 109.49630 * 300.00510 * 7 5 4 9 9 C 1.53041 * 109.49515 * 60.06632 * 7 5 4 10 10 C 1.53040 * 109.53747 * 181.28915 * 9 7 5 11 11 C 1.53194 * 109.33455 * 298.68195 * 10 9 7 12 12 N 1.46923 * 108.77798 * 54.62349 * 11 10 9 13 13 C 1.34771 * 120.63274 * 126.41126 * 12 11 10 14 14 O 1.21284 * 120.00058 * 179.97438 * 13 12 11 15 15 C 1.50703 * 120.00104 * 359.97438 * 13 12 11 16 16 H 1.09003 * 109.46600 * 40.00081 * 15 13 12 17 17 N 1.46901 * 109.46953 * 160.00131 * 15 13 12 18 18 C 1.52996 * 109.47111 * 280.00144 * 15 13 12 19 19 C 1.53003 * 109.47113 * 175.00084 * 18 15 13 20 20 C 1.50699 * 109.47111 * 180.02562 * 19 18 15 21 21 H 1.07999 * 120.00230 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00238 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99394 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00224 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47472 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46957 * 119.99864 * 24 22 20 27 27 H 1.48502 * 109.47427 * 239.99715 * 24 22 20 28 28 C 1.46928 * 118.73488 * 306.38846 * 12 11 10 29 29 H 1.08994 * 109.47235 * 60.00181 * 1 2 3 30 30 H 1.09005 * 109.46828 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47441 * 299.99910 * 1 2 3 32 32 H 1.09000 * 109.47441 * 240.00090 * 2 1 3 33 33 H 1.09002 * 109.47087 * 119.99536 * 2 1 3 34 34 H 1.09001 * 109.47671 * 60.00109 * 3 2 1 35 35 H 1.08998 * 109.47454 * 300.00107 * 3 2 1 36 36 H 0.97005 * 119.99811 * 0.02562 * 4 3 2 37 37 H 1.09004 * 109.45766 * 301.33841 * 9 7 5 38 38 H 1.08994 * 109.45978 * 61.29745 * 9 7 5 39 39 H 1.09000 * 109.49381 * 178.71887 * 10 9 7 40 40 H 1.08996 * 109.50181 * 58.64681 * 10 9 7 41 41 H 1.08996 * 109.58735 * 294.83264 * 11 10 9 42 42 H 1.09005 * 109.58662 * 174.40756 * 11 10 9 43 43 H 1.00901 * 110.99895 * 296.03961 * 17 15 13 44 44 H 1.00900 * 111.00043 * 60.00177 * 17 15 13 45 45 H 1.09005 * 109.47166 * 294.99889 * 18 15 13 46 46 H 1.09005 * 109.47162 * 54.99882 * 18 15 13 47 47 H 1.09003 * 109.46429 * 299.99912 * 19 18 15 48 48 H 1.08988 * 109.47148 * 59.99654 * 19 18 15 49 49 H 0.97000 * 119.99379 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.58765 * 293.82000 * 28 12 11 51 51 H 1.09001 * 109.70116 * 173.46771 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 -0.0050 6 8 3.5723 3.6601 -0.0100 7 6 5.6858 2.6099 -0.0049 8 1 6.0496 2.1004 0.8873 9 6 6.1967 1.8840 -1.2516 10 6 7.7267 1.8555 -1.2363 11 6 8.2610 3.2910 -1.2588 12 7 7.6604 4.0367 -0.1445 13 6 8.4368 4.6929 0.7403 14 8 7.9287 5.3053 1.6557 15 6 9.9363 4.6658 0.5924 16 1 10.1989 4.7499 -0.4622 17 7 10.5219 5.7904 1.3341 18 6 10.4800 3.3488 1.1499 19 6 11.9851 3.2667 0.8877 20 6 12.5206 1.9692 1.4363 21 1 11.8541 1.2730 1.9236 22 6 13.8613 1.6709 1.3160 23 7 14.6728 2.5185 0.7221 24 14 14.5251 0.0630 1.9966 25 1 13.4162 -0.7094 2.6120 26 1 15.1279 -0.7295 0.8949 27 1 15.5590 0.3493 3.0235 28 6 6.1970 4.0539 -0.0134 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9900 0.6025 0.0006 37 1 5.8140 0.8634 -1.2599 38 1 5.8526 2.4079 -2.1434 39 1 8.0893 1.3186 -2.1129 40 1 8.0723 1.3528 -0.3331 41 1 7.9933 3.7658 -2.2027 42 1 9.3454 3.2791 -1.1480 43 1 10.2286 6.6732 0.9433 44 1 10.2926 5.7352 2.3152 45 1 10.2953 3.3048 2.2233 46 1 9.9798 2.5130 0.6606 47 1 12.1698 3.3107 -0.1857 48 1 12.4853 4.1024 1.3769 49 1 15.6160 2.3085 0.6372 50 1 5.7610 4.5909 -0.8557 51 1 5.9173 4.5461 0.9180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424112928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:04 Heat of formation + Delta-G solvation = -126.815345 kcal Electronic energy + Delta-G solvation = -28395.257451 eV Core-core repulsion = 24520.052347 eV Total energy + Delta-G solvation = -3875.205104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.79978 -40.77986 -38.37696 -36.91327 -36.79721 -34.83091 -34.36813 -33.23687 -32.27029 -31.90914 -28.54303 -27.42558 -26.64459 -25.35041 -24.27911 -22.62309 -22.57318 -22.03782 -21.00751 -19.92935 -18.79741 -18.29021 -17.87069 -17.40405 -17.00241 -16.86103 -16.79589 -16.37945 -16.02625 -15.82256 -15.42104 -15.20902 -14.94359 -14.89161 -14.38212 -14.19580 -14.09366 -13.86467 -13.72738 -13.70711 -13.39624 -13.37872 -12.96451 -12.80497 -12.61810 -12.45651 -12.27388 -12.08366 -12.04461 -11.96863 -11.77108 -11.72921 -11.69631 -11.56105 -11.19576 -10.97897 -10.86035 -10.46587 -10.16751 -9.75215 -9.64030 -8.10818 -6.20516 1.42289 1.43764 1.45681 1.51051 1.56875 1.79014 2.26100 2.46952 3.22565 3.37925 3.50484 3.66745 3.72995 3.78859 3.90725 4.02838 4.05364 4.06195 4.13851 4.20537 4.30470 4.33942 4.49047 4.56596 4.64689 4.73527 4.74154 4.75129 4.78694 4.85615 4.89701 4.95607 5.05985 5.06846 5.14319 5.23048 5.25067 5.30493 5.38268 5.44688 5.45558 5.60854 5.87160 6.01560 6.06757 6.29048 6.33267 6.45519 6.48620 6.98029 7.01787 7.15448 7.47414 9.00488 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.002594 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.986398 B =10790.128985 C =12071.318332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.715 5.715 5 C 0.523 3.477 6 O -0.583 6.583 7 C -0.114 4.114 8 H 0.105 0.895 9 C -0.100 4.100 10 C -0.131 4.131 11 C 0.089 3.911 12 N -0.602 5.602 13 C 0.486 3.514 14 O -0.586 6.586 15 C 0.087 3.913 16 H 0.111 0.889 17 N -0.818 5.818 18 C -0.080 4.080 19 C 0.041 3.959 20 C -0.537 4.537 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.929 5.929 24 Si 0.958 3.042 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.285 1.285 28 C 0.133 3.867 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.345 0.655 44 H 0.344 0.656 45 H 0.039 0.961 46 H 0.073 0.927 47 H -0.003 1.003 48 H 0.003 0.997 49 H 0.261 0.739 50 H 0.074 0.926 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.182 -7.466 -7.720 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.008 4.008 4 N -0.368 5.368 5 C 0.309 3.691 6 O -0.463 6.463 7 C -0.137 4.137 8 H 0.123 0.877 9 C -0.138 4.138 10 C -0.169 4.169 11 C -0.032 4.032 12 N -0.335 5.335 13 C 0.274 3.726 14 O -0.467 6.467 15 C -0.029 4.029 16 H 0.129 0.871 17 N -0.347 5.347 18 C -0.118 4.118 19 C 0.004 3.996 20 C -0.575 4.575 21 H 0.075 0.925 22 C -0.197 4.197 23 N -0.570 5.570 24 Si 0.784 3.216 25 H -0.187 1.187 26 H -0.203 1.203 27 H -0.211 1.211 28 C 0.009 3.991 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.254 0.746 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.016 0.984 48 H 0.021 0.979 49 H 0.070 0.930 50 H 0.092 0.908 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.005 -6.680 -7.530 26.955 hybrid contribution -0.182 -0.316 0.824 0.901 sum -25.187 -6.996 -6.706 26.987 Atomic orbital electron populations 1.21698 0.94286 1.02796 1.02151 1.21692 0.97145 0.93862 1.03781 1.21479 0.79023 0.98878 1.01437 1.45931 1.07733 1.08611 1.74479 1.20654 0.89979 0.83641 0.74800 1.90707 1.71227 1.33040 1.51358 1.21625 0.90847 0.98030 1.03156 0.87734 1.21536 0.95746 1.01490 0.95041 1.21930 0.95051 0.95332 1.04571 1.22196 0.99356 0.92784 0.88888 1.48264 1.06181 1.50629 1.28385 1.22537 0.91748 0.77542 0.80798 1.90632 1.76271 1.45529 1.34273 1.21685 0.85818 0.94471 1.00932 0.87117 1.59022 1.63519 1.04465 1.07699 1.21420 0.97935 0.93211 0.99248 1.18817 0.90410 0.95189 0.95229 1.21716 0.93839 1.04833 1.37149 0.92536 1.25890 0.97623 1.00367 0.95797 1.70117 1.04533 1.37592 1.44746 0.85503 0.78352 0.79686 0.78102 1.18665 1.20264 1.21077 1.21175 0.79379 0.95769 1.02734 0.92415 0.91109 0.92790 0.89932 0.90534 0.92981 0.92244 0.74590 0.88182 0.90488 0.87366 0.91558 0.89094 0.89112 0.84165 0.84227 0.94253 0.90880 0.98433 0.97885 0.93027 0.90805 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 71.98 0.71 -0.34 16 2 C -0.13 -0.89 6.05 30.59 0.19 -0.70 16 3 C 0.12 1.50 5.67 86.38 0.49 1.99 16 4 N -0.72 -9.54 5.44 -463.05 -2.52 -12.06 16 5 C 0.52 10.81 7.16 87.66 0.63 11.44 16 6 O -0.58 -17.43 15.92 -3.03 -0.05 -17.48 16 7 C -0.11 -2.13 2.68 -11.46 -0.03 -2.16 16 8 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 9 C -0.10 -1.23 5.08 30.62 0.16 -1.08 16 10 C -0.13 -1.94 6.08 30.67 0.19 -1.75 16 11 C 0.09 1.76 5.76 86.36 0.50 2.26 16 12 N -0.60 -15.67 2.97 -818.92 -2.43 -18.10 16 13 C 0.49 15.99 6.94 87.66 0.61 16.60 16 14 O -0.59 -23.17 15.67 -3.04 -0.05 -23.22 16 15 C 0.09 2.92 2.29 44.17 0.10 3.02 16 16 H 0.11 3.45 6.80 -2.39 -0.02 3.44 16 17 N -0.82 -28.65 8.44 -171.80 -1.45 -30.10 16 18 C -0.08 -3.15 4.45 30.59 0.14 -3.01 16 19 C 0.04 2.06 4.86 29.85 0.15 2.21 16 20 C -0.54 -29.60 9.11 25.60 0.23 -29.36 16 21 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 22 C 0.00 0.05 5.46 84.65 0.46 0.51 16 23 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 24 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 C 0.13 3.41 5.06 86.36 0.44 3.84 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 32 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.45 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.42 2.97 7.87 -92.70 -0.73 2.24 16 37 H 0.10 0.69 7.53 -2.38 -0.02 0.67 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.09 2.04 4.84 -2.38 -0.01 2.03 16 43 H 0.35 10.57 9.06 -89.69 -0.81 9.76 16 44 H 0.34 12.41 8.58 -89.69 -0.77 11.64 16 45 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.07 2.59 6.97 -2.38 -0.02 2.57 16 47 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 48 H 0.00 0.15 7.75 -2.39 -0.02 0.14 16 49 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 50 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 51 H 0.06 2.07 7.01 -2.39 -0.02 2.05 16 Total: -1.00 -75.96 403.54 -0.61 -76.58 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -1.37 Total: 30.87 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.95 Total: 3.47 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -6.12 Total: -115.67 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.10 Total: -40.70 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -75.96 -0.61 -76.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424112928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.238 kcal (2) G-P(sol) polarization free energy of solvation -75.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds