Wall clock time and date at job start Fri Apr 10 2020 18:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.66153 * 2 1 4 4 C 1.54594 * 110.98783 * 236.83839 * 2 1 3 5 5 N 1.48120 * 103.42364 * 204.37660 * 4 2 1 6 6 C 1.34775 * 127.03568 * 219.28987 * 5 4 2 7 7 O 1.21272 * 120.00383 * 179.68186 * 6 5 4 8 8 C 1.50706 * 119.99592 * 359.68337 * 6 5 4 9 9 H 1.08999 * 109.47482 * 40.00057 * 8 6 5 10 10 N 1.46904 * 109.47048 * 160.00322 * 8 6 5 11 11 C 1.53001 * 109.47109 * 279.99669 * 8 6 5 12 12 C 1.52996 * 109.47271 * 175.00177 * 11 8 6 13 13 C 1.50697 * 109.47274 * 180.02562 * 12 11 8 14 14 H 1.07997 * 120.00100 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00232 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99569 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00032 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47021 * 60.00409 * 17 15 13 19 19 H 1.48501 * 109.46722 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47266 * 300.00111 * 17 15 13 21 21 C 1.47483 * 105.93077 * 39.02311 * 5 4 2 22 22 C 1.53999 * 107.08711 * 334.78320 * 21 5 4 23 23 H 1.09000 * 110.32831 * 120.29610 * 22 21 5 24 24 N 1.46902 * 110.32657 * 242.41337 * 22 21 5 25 25 C 1.47018 * 110.99920 * 295.85586 * 24 22 21 26 26 C 1.53097 * 109.25797 * 177.60670 * 25 24 22 27 27 O 1.43014 * 109.25694 * 56.85012 * 26 25 24 28 28 C 1.43015 * 113.73978 * 301.32420 * 27 26 25 29 29 C 1.47012 * 111.00303 * 172.22009 * 24 22 21 30 30 H 1.08996 * 109.47120 * 296.81089 * 1 2 3 31 31 H 1.08996 * 109.47116 * 56.81138 * 1 2 3 32 32 H 1.08999 * 109.46967 * 176.81101 * 1 2 3 33 33 H 1.09004 * 110.61676 * 85.86309 * 4 2 1 34 34 H 1.08998 * 110.55154 * 322.85532 * 4 2 1 35 35 H 1.00897 * 111.00057 * 59.99490 * 10 8 6 36 36 H 1.00894 * 111.00011 * 183.95478 * 10 8 6 37 37 H 1.09003 * 109.47396 * 295.00334 * 11 8 6 38 38 H 1.08997 * 109.46986 * 55.00221 * 11 8 6 39 39 H 1.09003 * 109.47038 * 300.00376 * 12 11 8 40 40 H 1.09004 * 109.46868 * 59.99821 * 12 11 8 41 41 H 0.96998 * 119.99811 * 179.97438 * 16 15 13 42 42 H 1.09008 * 109.91163 * 94.14455 * 21 5 4 43 43 H 1.09008 * 109.91563 * 215.22563 * 21 5 4 44 44 H 1.09000 * 109.50537 * 297.54221 * 25 24 22 45 45 H 1.08997 * 109.50768 * 57.66822 * 25 24 22 46 46 H 1.08988 * 109.50870 * 296.91231 * 26 25 24 47 47 H 1.09003 * 109.50638 * 176.77854 * 26 25 24 48 48 H 1.08995 * 109.50817 * 298.74499 * 28 27 26 49 49 H 1.09001 * 109.51118 * 178.60800 * 28 27 26 50 50 H 1.08998 * 109.50693 * 302.32790 * 29 24 22 51 51 H 1.08999 * 109.50693 * 62.40848 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0837 -0.7895 -1.2083 5 7 3.4321 -1.2058 -0.7583 6 6 4.5593 -1.2408 -1.4963 7 8 5.6026 -1.6002 -0.9932 8 6 4.5232 -0.8331 -2.9467 9 1 3.8754 0.0357 -3.0640 10 7 5.8810 -0.4954 -3.3944 11 6 3.9818 -1.9903 -3.7884 12 6 3.8278 -1.5359 -5.2412 13 6 3.2939 -2.6756 -6.0702 14 1 3.0850 -3.6286 -5.6071 15 6 3.0712 -2.5013 -7.4197 16 7 3.3242 -1.3403 -7.9833 17 14 2.4088 -3.9138 -8.4470 18 1 1.0870 -4.3343 -7.9167 19 1 2.2583 -3.4723 -9.8568 20 1 3.3540 -5.0575 -8.3841 21 6 3.2902 -1.5681 0.6643 22 6 2.0775 -0.7916 1.2101 23 1 1.3228 -1.4829 1.5851 24 7 2.4983 0.1296 2.2743 25 6 3.0270 -0.6080 3.4309 26 6 3.5077 0.3890 4.4887 27 8 2.4270 1.2546 4.8466 28 6 1.8884 1.9891 3.7440 29 6 1.3913 1.0084 2.6786 30 1 -0.3633 0.4635 0.9172 31 1 -0.3633 0.5625 -0.8600 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1525 -0.1481 -2.0870 34 1 1.4612 -1.6602 -1.4142 35 1 6.5012 -1.2851 -3.2956 36 1 5.8747 -0.1572 -4.3449 37 1 4.6761 -2.8294 -3.7419 38 1 3.0117 -2.2996 -3.3997 39 1 3.1335 -0.6969 -5.2877 40 1 4.7980 -1.2266 -5.6300 41 1 3.1679 -1.2178 -8.9327 42 1 3.1178 -2.6403 0.7589 43 1 4.1908 -1.2875 1.2105 44 1 2.2417 -1.2355 3.8524 45 1 3.8619 -1.2327 3.1135 46 1 4.3293 0.9803 4.0848 47 1 3.8478 -0.1526 5.3714 48 1 2.6629 2.6270 3.3183 49 1 1.0573 2.6048 4.0880 50 1 1.0321 1.5635 1.8121 51 1 0.5795 0.4067 3.0873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424157896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:12 Heat of formation + Delta-G solvation = -77.363604 kcal Electronic energy + Delta-G solvation = -29022.649462 eV Core-core repulsion = 25149.588747 eV Total energy + Delta-G solvation = -3873.060715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.66520 -39.48215 -37.93864 -35.45469 -35.22090 -32.85802 -32.83834 -31.43152 -29.94552 -29.76887 -27.19310 -26.55517 -25.84060 -24.38855 -23.87816 -22.28433 -20.80555 -20.45642 -20.20006 -18.96374 -17.68766 -17.09882 -16.42981 -16.27817 -15.90616 -15.63656 -15.28562 -15.12010 -14.86353 -14.57421 -14.52902 -14.40637 -13.98905 -13.74966 -13.42582 -13.25714 -12.80923 -12.74507 -12.54869 -12.49396 -12.17231 -12.05323 -11.97448 -11.74083 -11.63141 -11.39311 -11.26745 -11.06688 -10.91692 -10.83650 -10.74166 -10.71305 -9.98785 -9.98591 -9.89546 -9.29806 -9.20915 -8.74958 -8.60673 -8.44933 -8.17462 -6.09669 -4.12821 2.94454 2.97215 3.27135 3.32169 3.34419 3.36384 3.54390 4.11470 4.30789 4.38243 4.55072 4.60969 4.69817 4.80229 4.82765 4.91764 4.93253 5.00857 5.15310 5.18360 5.20503 5.24729 5.26487 5.27781 5.34520 5.39239 5.43362 5.52502 5.55888 5.61369 5.64882 5.66523 5.73593 5.79058 5.85979 6.00516 6.28301 6.28880 6.53451 6.57010 6.67479 6.78897 6.86421 7.44722 7.51210 7.60849 7.70986 7.87302 7.91728 8.30048 8.45060 8.92847 9.51971 11.01208 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021207 B = 0.002578 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.976252 B =10857.027131 C =11485.882915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.094 0.906 4 C 0.105 3.895 5 N -0.620 5.620 6 C 0.547 3.453 7 O -0.538 6.538 8 C 0.080 3.920 9 H 0.095 0.905 10 N -0.831 5.831 11 C -0.137 4.137 12 C 0.026 3.974 13 C -0.524 4.524 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.114 3.886 22 C 0.075 3.925 23 H 0.060 0.940 24 N -0.527 5.527 25 C 0.013 3.987 26 C 0.064 3.936 27 O -0.387 6.387 28 C 0.063 3.937 29 C 0.016 3.984 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.345 0.655 36 H 0.354 0.646 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.262 0.738 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.060 0.940 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 5.241 22.733 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 H 0.112 0.888 4 C -0.019 4.019 5 N -0.355 5.355 6 C 0.336 3.664 7 O -0.414 6.414 8 C -0.035 4.035 9 H 0.113 0.887 10 N -0.363 5.363 11 C -0.176 4.176 12 C -0.011 4.011 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.010 4.010 22 C -0.034 4.034 23 H 0.078 0.922 24 N -0.252 5.252 25 C -0.115 4.115 26 C -0.013 4.013 27 O -0.306 6.306 28 C -0.014 4.014 29 C -0.112 4.112 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.079 0.921 49 H 0.115 0.885 50 H 0.110 0.890 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.258 5.990 23.349 24.672 hybrid contribution -1.222 -2.128 -1.379 2.815 sum -6.481 3.862 21.970 23.229 Atomic orbital electron populations 1.21878 0.93705 1.02565 1.02392 1.22329 0.95823 1.00475 0.93445 0.88770 1.22587 0.83056 0.98870 0.97383 1.48646 1.08663 1.67471 1.10719 1.20569 0.81287 0.76335 0.88187 1.90633 1.29861 1.47653 1.73232 1.21431 0.92836 0.99607 0.89645 0.88688 1.58733 1.07294 1.40432 1.29845 1.22372 1.00231 0.96193 0.98843 1.19087 0.97165 0.96832 0.88047 1.21136 1.43712 0.97980 0.93391 0.92808 1.25009 0.95542 0.95714 0.98005 1.69938 1.48489 1.23015 1.11750 0.86648 0.79518 0.82557 0.79237 1.20234 1.21205 1.20223 1.21941 0.98550 0.97687 0.82791 1.22665 0.95705 0.93323 0.91701 0.92240 1.62295 1.33083 1.21078 1.08781 1.22853 1.00649 0.96548 0.91410 1.22658 0.89375 0.91600 0.97630 1.87977 1.50912 1.58401 1.33302 1.22685 0.98739 0.93214 0.86785 1.22878 0.92653 0.96287 0.99368 0.92271 0.91530 0.92153 0.89186 0.90519 0.84142 0.83023 0.92739 0.92574 0.96374 0.96417 0.92813 0.91824 0.89733 0.93822 0.89218 0.92070 0.88410 0.92141 0.88473 0.88980 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.90 37.16 0.33 -0.71 16 2 C -0.10 -0.91 2.40 -88.93 -0.21 -1.13 16 3 H 0.09 0.92 7.46 -51.93 -0.39 0.53 16 4 C 0.10 1.19 6.02 -2.31 -0.01 1.17 16 5 N -0.62 -8.73 3.29 -169.98 -0.56 -9.29 16 6 C 0.55 9.61 7.14 -10.98 -0.08 9.53 16 7 O -0.54 -11.07 16.59 5.56 0.09 -10.98 16 8 C 0.08 1.40 2.62 -68.86 -0.18 1.22 16 9 H 0.10 1.59 6.91 -51.93 -0.36 1.23 16 10 N -0.83 -14.76 8.94 -5.65 -0.05 -14.81 16 11 C -0.14 -2.71 4.78 -26.73 -0.13 -2.83 16 12 C 0.03 0.62 4.74 -27.89 -0.13 0.49 16 13 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 C 0.11 1.36 6.14 -2.98 -0.02 1.34 16 22 C 0.07 0.70 2.32 -66.34 -0.15 0.54 16 23 H 0.06 0.51 7.86 -51.93 -0.41 0.10 16 24 N -0.53 -4.82 4.50 -224.69 -1.01 -5.83 16 25 C 0.01 0.11 5.41 -3.71 -0.02 0.09 16 26 C 0.06 0.52 7.01 37.21 0.26 0.79 16 27 O -0.39 -3.72 10.83 -35.23 -0.38 -4.10 16 28 C 0.06 0.48 7.01 37.21 0.26 0.75 16 29 C 0.02 0.12 4.51 -3.71 -0.02 0.11 16 30 H 0.06 0.36 6.36 -51.93 -0.33 0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 33 H 0.09 1.05 6.67 -51.93 -0.35 0.71 16 34 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 35 H 0.35 6.21 8.58 -39.29 -0.34 5.87 16 36 H 0.35 6.23 7.55 -39.29 -0.30 5.94 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.07 7.78 -51.93 -0.40 0.67 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.08 1.12 6.54 -51.92 -0.34 0.78 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.75 6.51 -51.93 -0.34 0.41 16 46 H 0.06 0.52 8.14 -51.94 -0.42 0.10 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.64 5.65 -51.93 -0.29 0.35 16 51 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -32.17 390.19 -9.63 -41.80 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.80 Total: 8.04 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.51 Total: -1.70 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.89 Total: -55.07 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.29 Total: -15.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.17 -9.63 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.563 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds