Wall clock time and date at job start Fri Apr 10 2020 18:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47264 * 2 1 4 4 N 1.46505 * 109.47516 * 179.97438 * 3 2 1 5 5 C 1.45652 * 117.70313 * 89.99670 * 4 3 2 6 6 C 1.52990 * 110.77054 * 158.10173 * 5 4 3 7 7 N 1.47267 * 108.18560 * 46.73176 * 6 5 4 8 8 C 1.34779 * 121.35557 * 118.47283 * 7 6 5 9 9 O 1.21278 * 119.99771 * 174.53688 * 8 7 6 10 10 C 1.50696 * 119.99664 * 354.53520 * 8 7 6 11 11 H 1.08997 * 109.47342 * 39.99964 * 10 8 7 12 12 N 1.46904 * 109.47031 * 160.00362 * 10 8 7 13 13 C 1.53005 * 109.47250 * 279.99945 * 10 8 7 14 14 C 1.52997 * 109.46967 * 175.00226 * 13 10 8 15 15 C 1.50703 * 109.46912 * 180.02562 * 14 13 10 16 16 H 1.08000 * 120.00117 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00136 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00258 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00115 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46942 * 89.99952 * 19 17 15 21 21 H 1.48498 * 109.47456 * 210.00175 * 19 17 15 22 22 H 1.48506 * 109.46969 * 330.00501 * 19 17 15 23 23 C 1.47053 * 117.29413 * 298.74233 * 7 6 5 24 24 C 1.52998 * 109.56975 * 162.31085 * 23 7 6 25 25 C 1.53001 * 109.56514 * 282.66902 * 23 7 6 26 26 C 1.33379 * 117.70441 * 270.02647 * 4 3 2 27 27 O 1.21279 * 118.49359 * 4.31375 * 26 4 3 28 28 H 1.09004 * 109.46691 * 59.99839 * 1 2 3 29 29 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47135 * 299.99934 * 1 2 3 31 31 H 1.09001 * 109.47611 * 239.99948 * 2 1 3 32 32 H 1.09001 * 109.47401 * 119.99976 * 2 1 3 33 33 H 1.09006 * 109.47094 * 60.00157 * 3 2 1 34 34 H 1.08999 * 109.47762 * 300.00029 * 3 2 1 35 35 H 1.09000 * 109.21265 * 37.77668 * 5 4 3 36 36 H 1.08999 * 109.21724 * 278.43690 * 5 4 3 37 37 H 1.08996 * 109.71982 * 287.05561 * 6 5 4 38 38 H 1.09000 * 109.71509 * 166.40348 * 6 5 4 39 39 H 1.00893 * 110.99899 * 59.99817 * 12 10 8 40 40 H 1.00901 * 111.00079 * 183.95251 * 12 10 8 41 41 H 1.08999 * 109.46842 * 55.00119 * 13 10 8 42 42 H 1.08998 * 109.46734 * 295.00371 * 13 10 8 43 43 H 1.08999 * 109.47427 * 60.00251 * 14 13 10 44 44 H 1.08998 * 109.47512 * 299.99668 * 14 13 10 45 45 H 0.96997 * 119.99874 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.46955 * 70.57924 * 24 23 7 47 47 H 1.08999 * 109.47022 * 190.57574 * 24 23 7 48 48 H 1.08992 * 109.47092 * 310.57648 * 24 23 7 49 49 H 1.08999 * 109.47046 * 59.99878 * 25 23 7 50 50 H 1.09010 * 109.46770 * 179.97438 * 25 23 7 51 51 H 1.09000 * 109.47300 * 299.99237 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1827 1.4423 -1.2887 6 6 5.6100 1.9759 -1.1515 7 7 6.2372 1.3180 0.0072 8 6 7.3329 0.5457 -0.1331 9 8 7.8876 0.0964 0.8473 10 6 7.8685 0.2405 -1.5082 11 1 7.8029 1.1332 -2.1301 12 7 9.2715 -0.1822 -1.4045 13 6 7.0429 -0.8825 -2.1394 14 6 7.5055 -1.1074 -3.5803 15 6 6.6919 -2.2131 -4.2023 16 1 5.9217 -2.7057 -3.6274 17 6 6.9308 -2.5957 -5.5051 18 7 6.2212 -3.5609 -6.0477 19 14 8.2626 -1.7432 -6.4997 20 1 9.5516 -2.4572 -6.3155 21 1 7.8910 -1.7553 -7.9374 22 1 8.4039 -0.3392 -6.0367 23 6 5.6161 1.5330 1.3226 24 6 6.1036 0.4623 2.3007 25 6 5.9937 2.9198 1.8471 26 6 4.1247 1.4422 1.1818 27 8 3.4522 1.3617 2.1878 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.6294 2.0727 -1.9848 36 1 4.2160 0.4241 -1.6763 37 1 5.5859 3.0541 -0.9938 38 1 6.1760 1.7482 -2.0547 39 1 9.3588 -1.0087 -0.8325 40 1 9.6729 -0.3308 -2.3183 41 1 5.9889 -0.6049 -2.1353 42 1 7.1793 -1.7997 -1.5666 43 1 8.5595 -1.3850 -3.5845 44 1 7.3690 -0.1902 -4.1532 45 1 6.3891 -3.8298 -6.9644 46 1 7.1513 0.6410 2.5424 47 1 5.5080 0.5050 3.2126 48 1 5.9987 -0.5218 1.8440 49 1 5.6404 3.6802 1.1507 50 1 5.5321 3.0777 2.8219 51 1 7.0773 2.9896 1.9423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424190770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:29 Heat of formation + Delta-G solvation = -64.474900 kcal Electronic energy + Delta-G solvation = -30157.382257 eV Core-core repulsion = 26284.880438 eV Total energy + Delta-G solvation = -3872.501819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44331 -39.52112 -36.79463 -36.44528 -35.66291 -33.50362 -32.91458 -32.25712 -30.40991 -29.28739 -27.46389 -27.04517 -26.65146 -24.42771 -23.74301 -22.78129 -21.53096 -20.55060 -19.82291 -18.05795 -17.78016 -17.25060 -16.83127 -16.23872 -15.95082 -15.49573 -15.07344 -14.93957 -14.65884 -14.39013 -14.25281 -14.04998 -13.74121 -13.70753 -13.21925 -13.03538 -12.80718 -12.73833 -12.70556 -12.43214 -12.32205 -12.21241 -12.05885 -11.94211 -11.88079 -11.60863 -11.44581 -11.35914 -11.26365 -11.01933 -10.77360 -10.32807 -10.19944 -10.13303 -9.93644 -9.38645 -9.11388 -8.94675 -8.71358 -8.68154 -8.37289 -6.17615 -4.17788 2.42253 2.53581 2.69690 2.90572 3.19876 3.28206 3.28801 4.13394 4.31613 4.38903 4.56212 4.76550 4.78683 4.84356 4.86006 4.89319 4.96885 5.02012 5.13107 5.15259 5.22277 5.27698 5.38622 5.44179 5.49414 5.50400 5.52124 5.58045 5.65412 5.76706 5.84302 5.89596 5.97667 6.01266 6.04716 6.05983 6.17304 6.24780 6.32877 6.48076 6.56055 6.99938 7.12215 7.15052 7.23868 7.40582 7.59486 7.69711 7.94950 8.25348 8.37888 8.86098 9.43382 10.95507 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.004220 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.388975 B = 6633.253614 C = 8338.189514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.108 3.892 4 N -0.600 5.600 5 C 0.093 3.907 6 C 0.090 3.910 7 N -0.615 5.615 8 C 0.535 3.465 9 O -0.520 6.520 10 C 0.070 3.930 11 H 0.097 0.903 12 N -0.830 5.830 13 C -0.130 4.130 14 C -0.009 4.009 15 C -0.524 4.524 16 H 0.071 0.929 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.163 3.837 24 C -0.131 4.131 25 C -0.147 4.147 26 C 0.519 3.481 27 O -0.540 6.540 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.349 0.651 40 H 0.351 0.649 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.012 0.988 44 H 0.018 0.982 45 H 0.264 0.736 46 H 0.095 0.905 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 14.547 10.318 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.015 4.015 4 N -0.331 5.331 5 C -0.031 4.031 6 C -0.034 4.034 7 N -0.352 5.352 8 C 0.324 3.676 9 O -0.395 6.395 10 C -0.045 4.045 11 H 0.115 0.885 12 N -0.362 5.362 13 C -0.170 4.170 14 C -0.046 4.046 15 C -0.562 4.562 16 H 0.089 0.911 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C 0.076 3.924 24 C -0.189 4.189 25 C -0.205 4.205 26 C 0.306 3.694 27 O -0.417 6.417 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.132 0.868 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.030 0.970 44 H 0.036 0.964 45 H 0.074 0.926 46 H 0.114 0.886 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.102 14.849 11.556 19.495 hybrid contribution 0.153 -0.593 -1.504 1.624 sum -4.948 14.256 10.052 18.132 Atomic orbital electron populations 1.21671 0.95092 1.02046 1.01677 1.21851 0.96217 0.96908 1.02934 1.21657 0.79015 0.97652 1.03136 1.47298 1.07354 1.72597 1.05885 1.21932 0.93048 1.03465 0.84674 1.22188 0.92896 0.97702 0.90597 1.48367 1.29344 1.50465 1.07045 1.20748 0.78545 0.76485 0.91823 1.90652 1.57505 1.51471 1.39842 1.21588 0.90498 1.00241 0.92147 0.88487 1.58741 1.14400 1.42941 1.20113 1.22239 0.99268 0.96519 0.98950 1.19565 0.96463 0.97548 0.91072 1.21031 1.19628 1.17685 0.97886 0.91119 1.25032 0.95956 0.94640 0.97670 1.69908 1.40473 1.28845 1.14558 0.86792 0.82413 0.80671 0.79450 1.20209 1.21320 1.18970 1.20641 0.88052 0.98801 0.84941 1.22132 1.03257 0.96552 0.96935 1.22065 1.03033 0.93708 1.01709 1.20138 0.90280 0.75886 0.83078 1.90697 1.65387 1.49880 1.35698 0.92639 0.92397 0.92666 0.91516 0.91509 0.89746 0.90431 0.89045 0.90094 0.90129 0.86834 0.83762 0.83425 0.91943 0.92016 0.97028 0.96390 0.92583 0.88601 0.91930 0.92097 0.92267 0.90563 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.94 16 2 C -0.14 -1.52 6.25 -26.73 -0.17 -1.69 16 3 C 0.11 1.09 5.16 -4.04 -0.02 1.07 16 4 N -0.60 -6.84 2.81 -175.03 -0.49 -7.34 16 5 C 0.09 0.90 6.57 -4.50 -0.03 0.87 16 6 C 0.09 0.86 5.80 -3.63 -0.02 0.84 16 7 N -0.61 -7.68 2.62 -159.43 -0.42 -8.10 16 8 C 0.54 7.99 6.64 -10.99 -0.07 7.92 16 9 O -0.52 -9.00 12.45 5.56 0.07 -8.93 16 10 C 0.07 1.03 2.37 -68.86 -0.16 0.87 16 11 H 0.10 1.26 6.44 -51.93 -0.33 0.93 16 12 N -0.83 -12.39 8.94 -5.65 -0.05 -12.44 16 13 C -0.13 -2.26 4.63 -26.73 -0.12 -2.38 16 14 C -0.01 -0.19 3.81 -27.88 -0.11 -0.30 16 15 C -0.52 -13.84 9.66 -34.44 -0.33 -14.17 16 16 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 17 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 19 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -5.70 6.54 56.52 0.37 -5.33 16 23 C 0.16 2.10 0.97 -132.97 -0.13 1.97 16 24 C -0.13 -1.88 6.94 37.16 0.26 -1.62 16 25 C -0.15 -1.57 8.65 37.16 0.32 -1.25 16 26 C 0.52 7.06 6.31 -11.91 -0.08 6.98 16 27 O -0.54 -8.67 15.44 5.56 0.09 -8.59 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.93 7.23 -51.93 -0.38 0.56 16 34 H 0.08 0.61 7.81 -51.93 -0.41 0.20 16 35 H 0.09 0.64 7.85 -51.93 -0.41 0.23 16 36 H 0.08 0.92 7.02 -51.93 -0.36 0.56 16 37 H 0.08 0.61 7.53 -51.93 -0.39 0.22 16 38 H 0.11 1.04 5.40 -51.93 -0.28 0.76 16 39 H 0.35 5.37 8.58 -39.30 -0.34 5.04 16 40 H 0.35 5.05 7.55 -39.29 -0.30 4.76 16 41 H 0.06 1.05 6.46 -51.93 -0.34 0.71 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.01 0.24 6.30 -51.93 -0.33 -0.09 16 44 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 46 H 0.10 1.43 6.35 -51.93 -0.33 1.10 16 47 H 0.06 0.87 7.55 -51.93 -0.39 0.48 16 48 H 0.06 0.98 7.40 -51.93 -0.38 0.60 16 49 H 0.06 0.55 7.52 -51.93 -0.39 0.16 16 50 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -32.07 389.16 -7.92 -39.99 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.69 Total: 9.76 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.39 Total: -0.03 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.19 Total: -53.64 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.16 Total: -17.51 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.07 -7.92 -39.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424190770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.484 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds