Wall clock time and date at job start Fri Apr 10 2020 18:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47264 * 2 1 4 4 N 1.46505 * 109.47516 * 179.97438 * 3 2 1 5 5 C 1.45652 * 117.70313 * 89.99670 * 4 3 2 6 6 C 1.52990 * 110.77054 * 158.10173 * 5 4 3 7 7 N 1.47267 * 108.18560 * 46.73176 * 6 5 4 8 8 C 1.34779 * 121.35557 * 118.47283 * 7 6 5 9 9 O 1.21278 * 119.99771 * 174.53688 * 8 7 6 10 10 C 1.50696 * 119.99664 * 354.53520 * 8 7 6 11 11 H 1.08997 * 109.47342 * 39.99964 * 10 8 7 12 12 N 1.46904 * 109.47031 * 160.00362 * 10 8 7 13 13 C 1.53005 * 109.47250 * 279.99945 * 10 8 7 14 14 C 1.52997 * 109.46967 * 175.00226 * 13 10 8 15 15 C 1.50703 * 109.46912 * 180.02562 * 14 13 10 16 16 H 1.08000 * 120.00117 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00136 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00258 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00115 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46942 * 89.99952 * 19 17 15 21 21 H 1.48498 * 109.47456 * 210.00175 * 19 17 15 22 22 H 1.48506 * 109.46969 * 330.00501 * 19 17 15 23 23 C 1.47053 * 117.29413 * 298.74233 * 7 6 5 24 24 C 1.52998 * 109.56975 * 162.31085 * 23 7 6 25 25 C 1.53001 * 109.56514 * 282.66902 * 23 7 6 26 26 C 1.33379 * 117.70441 * 270.02647 * 4 3 2 27 27 O 1.21279 * 118.49359 * 4.31375 * 26 4 3 28 28 H 1.09004 * 109.46691 * 59.99839 * 1 2 3 29 29 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47135 * 299.99934 * 1 2 3 31 31 H 1.09001 * 109.47611 * 239.99948 * 2 1 3 32 32 H 1.09001 * 109.47401 * 119.99976 * 2 1 3 33 33 H 1.09006 * 109.47094 * 60.00157 * 3 2 1 34 34 H 1.08999 * 109.47762 * 300.00029 * 3 2 1 35 35 H 1.09000 * 109.21265 * 37.77668 * 5 4 3 36 36 H 1.08999 * 109.21724 * 278.43690 * 5 4 3 37 37 H 1.08996 * 109.71982 * 287.05561 * 6 5 4 38 38 H 1.09000 * 109.71509 * 166.40348 * 6 5 4 39 39 H 1.00893 * 110.99899 * 59.99817 * 12 10 8 40 40 H 1.00901 * 111.00079 * 183.95251 * 12 10 8 41 41 H 1.08999 * 109.46842 * 55.00119 * 13 10 8 42 42 H 1.08998 * 109.46734 * 295.00371 * 13 10 8 43 43 H 1.08999 * 109.47427 * 60.00251 * 14 13 10 44 44 H 1.08998 * 109.47512 * 299.99668 * 14 13 10 45 45 H 0.96997 * 119.99874 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.46955 * 70.57924 * 24 23 7 47 47 H 1.08999 * 109.47022 * 190.57574 * 24 23 7 48 48 H 1.08992 * 109.47092 * 310.57648 * 24 23 7 49 49 H 1.08999 * 109.47046 * 59.99878 * 25 23 7 50 50 H 1.09010 * 109.46770 * 179.97438 * 25 23 7 51 51 H 1.09000 * 109.47300 * 299.99237 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1827 1.4423 -1.2887 6 6 5.6100 1.9759 -1.1515 7 7 6.2372 1.3180 0.0072 8 6 7.3329 0.5457 -0.1331 9 8 7.8876 0.0964 0.8473 10 6 7.8685 0.2405 -1.5082 11 1 7.8029 1.1332 -2.1301 12 7 9.2715 -0.1822 -1.4045 13 6 7.0429 -0.8825 -2.1394 14 6 7.5055 -1.1074 -3.5803 15 6 6.6919 -2.2131 -4.2023 16 1 5.9217 -2.7057 -3.6274 17 6 6.9308 -2.5957 -5.5051 18 7 6.2212 -3.5609 -6.0477 19 14 8.2626 -1.7432 -6.4997 20 1 9.5516 -2.4572 -6.3155 21 1 7.8910 -1.7553 -7.9374 22 1 8.4039 -0.3392 -6.0367 23 6 5.6161 1.5330 1.3226 24 6 6.1036 0.4623 2.3007 25 6 5.9937 2.9198 1.8471 26 6 4.1247 1.4422 1.1818 27 8 3.4522 1.3617 2.1878 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.6294 2.0727 -1.9848 36 1 4.2160 0.4241 -1.6763 37 1 5.5859 3.0541 -0.9938 38 1 6.1760 1.7482 -2.0547 39 1 9.3588 -1.0087 -0.8325 40 1 9.6729 -0.3308 -2.3183 41 1 5.9889 -0.6049 -2.1353 42 1 7.1793 -1.7997 -1.5666 43 1 8.5595 -1.3850 -3.5845 44 1 7.3690 -0.1902 -4.1532 45 1 6.3891 -3.8298 -6.9644 46 1 7.1513 0.6410 2.5424 47 1 5.5080 0.5050 3.2126 48 1 5.9987 -0.5218 1.8440 49 1 5.6404 3.6802 1.1507 50 1 5.5321 3.0777 2.8219 51 1 7.0773 2.9896 1.9423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424190770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:28 Heat of formation + Delta-G solvation = -86.985709 kcal Electronic energy + Delta-G solvation = -30158.358399 eV Core-core repulsion = 26284.880438 eV Total energy + Delta-G solvation = -3873.477961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.47077 -40.64505 -37.79931 -37.60871 -36.88295 -34.87538 -34.32594 -33.30984 -32.06368 -30.18094 -28.47893 -28.44471 -27.61454 -25.73245 -24.88326 -23.77970 -22.49966 -22.08027 -20.95293 -19.29698 -18.80344 -18.67267 -18.20891 -17.26097 -16.93154 -16.59652 -16.26973 -16.16082 -15.86966 -15.74497 -15.45065 -15.16452 -14.95514 -14.76613 -14.59119 -14.33069 -14.12811 -13.84632 -13.65186 -13.49164 -13.35953 -13.25717 -13.09975 -13.00526 -12.92749 -12.83737 -12.64817 -12.43504 -12.30252 -12.20973 -11.95513 -11.88392 -11.66034 -11.61795 -11.37880 -11.26405 -10.74791 -10.31282 -9.90468 -9.70910 -9.60999 -8.26916 -6.32593 1.36327 1.42075 1.42437 1.53197 1.54149 1.57871 1.94261 2.38844 3.09368 3.19712 3.40980 3.68576 3.72928 3.78356 3.86241 3.98309 4.00438 4.03856 4.09557 4.19056 4.23483 4.33938 4.50341 4.52987 4.58612 4.59696 4.62645 4.67070 4.69943 4.75268 4.76698 4.81467 4.87994 4.97497 5.06169 5.10382 5.12945 5.15959 5.24992 5.36273 5.39169 5.46541 5.49109 5.65104 6.02422 6.23381 6.27853 6.33035 6.50159 6.76309 6.93017 7.12433 7.32556 8.89912 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.004220 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.388975 B = 6633.253614 C = 8338.189514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.107 3.893 4 N -0.596 5.596 5 C 0.088 3.912 6 C 0.083 3.917 7 N -0.610 5.610 8 C 0.531 3.469 9 O -0.551 6.551 10 C 0.081 3.919 11 H 0.127 0.873 12 N -0.829 5.829 13 C -0.118 4.118 14 C -0.004 4.004 15 C -0.531 4.531 16 H 0.023 0.977 17 C 0.004 3.996 18 N -0.955 5.955 19 Si 0.951 3.049 20 H -0.272 1.272 21 H -0.291 1.291 22 H -0.229 1.229 23 C 0.161 3.839 24 C -0.122 4.122 25 C -0.139 4.139 26 C 0.515 3.485 27 O -0.572 6.572 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.344 0.656 40 H 0.356 0.644 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.021 0.979 44 H 0.039 0.961 45 H 0.265 0.735 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.032 0.968 49 H 0.079 0.921 50 H 0.075 0.925 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 18.109 8.937 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C -0.015 4.015 4 N -0.326 5.326 5 C -0.034 4.034 6 C -0.039 4.039 7 N -0.346 5.346 8 C 0.320 3.680 9 O -0.428 6.428 10 C -0.034 4.034 11 H 0.144 0.856 12 N -0.361 5.361 13 C -0.158 4.158 14 C -0.041 4.041 15 C -0.569 4.569 16 H 0.041 0.959 17 C -0.193 4.193 18 N -0.595 5.595 19 Si 0.774 3.226 20 H -0.198 1.198 21 H -0.217 1.217 22 H -0.152 1.152 23 C 0.073 3.927 24 C -0.179 4.179 25 C -0.197 4.197 26 C 0.302 3.698 27 O -0.452 6.452 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.040 0.960 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.052 0.948 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.375 18.448 10.159 21.510 hybrid contribution -0.192 -1.812 -1.028 2.092 sum -4.567 16.636 9.132 19.519 Atomic orbital electron populations 1.21641 0.93380 1.02242 1.02748 1.21806 0.97751 0.97251 1.00862 1.21778 0.78272 0.97054 1.04364 1.47399 1.08046 1.71263 1.05921 1.22115 0.93834 1.03232 0.84265 1.22527 0.92366 0.99250 0.89723 1.48377 1.28485 1.49793 1.07924 1.20816 0.79075 0.76591 0.91530 1.90647 1.58745 1.52720 1.40650 1.21516 0.89666 0.99953 0.92232 0.85552 1.58764 1.14349 1.42712 1.20278 1.22041 1.00074 0.96720 0.96926 1.19490 0.95871 0.96109 0.92633 1.21399 1.18958 1.18743 0.97777 0.95863 1.26054 0.98691 0.95381 0.99130 1.70089 1.43078 1.31255 1.15110 0.85651 0.78604 0.81183 0.77135 1.19790 1.21677 1.15193 1.20653 0.87722 0.99502 0.84837 1.21976 1.02880 0.95831 0.97236 1.22010 1.03072 0.92482 1.02156 1.20266 0.90436 0.75727 0.83382 1.90681 1.65987 1.51589 1.36919 0.90798 0.92715 0.92287 0.92397 0.94719 0.90551 0.87022 0.85202 0.92176 0.86885 0.85777 0.84302 0.82886 0.91632 0.94732 0.96033 0.94254 0.92635 0.89162 0.92180 0.94836 0.90163 0.90602 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 71.98 0.71 -1.68 16 2 C -0.14 -2.99 6.25 30.59 0.19 -2.80 16 3 C 0.11 2.00 5.16 86.38 0.45 2.45 16 4 N -0.60 -12.64 2.81 -826.84 -2.32 -14.96 16 5 C 0.09 1.46 6.57 86.54 0.57 2.03 16 6 C 0.08 1.29 5.80 86.23 0.50 1.79 16 7 N -0.61 -14.10 2.62 -776.72 -2.04 -16.14 16 8 C 0.53 15.19 6.64 87.66 0.58 15.78 16 9 O -0.55 -19.03 12.45 -3.02 -0.04 -19.07 16 10 C 0.08 2.19 2.37 44.17 0.10 2.30 16 11 H 0.13 2.71 6.44 -2.39 -0.02 2.69 16 12 N -0.83 -23.02 8.94 -171.80 -1.54 -24.56 16 13 C -0.12 -3.98 4.63 30.59 0.14 -3.84 16 14 C 0.00 -0.14 3.81 29.85 0.11 -0.03 16 15 C -0.53 -28.29 9.66 25.60 0.25 -28.04 16 16 H 0.02 1.41 7.99 -2.91 -0.02 1.38 16 17 C 0.00 0.22 5.47 84.65 0.46 0.68 16 18 N -0.95 -57.77 13.96 21.45 0.30 -57.47 16 19 Si 0.95 40.39 27.47 68.60 1.88 42.27 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.23 -8.36 6.54 99.48 0.65 -7.71 16 23 C 0.16 3.99 0.97 2.56 0.00 3.99 16 24 C -0.12 -3.60 6.94 71.98 0.50 -3.10 16 25 C -0.14 -2.69 8.65 71.98 0.62 -2.06 16 26 C 0.51 13.65 6.31 87.68 0.55 14.21 16 27 O -0.57 -18.58 15.44 -3.03 -0.05 -18.63 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.59 7.23 -2.38 -0.02 1.58 16 34 H 0.11 1.34 7.81 -2.39 -0.02 1.32 16 35 H 0.13 1.21 7.85 -2.39 -0.02 1.19 16 36 H 0.06 1.28 7.02 -2.39 -0.02 1.27 16 37 H 0.11 1.11 7.53 -2.39 -0.02 1.10 16 38 H 0.12 1.69 5.40 -2.39 -0.01 1.68 16 39 H 0.34 10.32 8.58 -89.70 -0.77 9.55 16 40 H 0.36 9.19 7.55 -89.69 -0.68 8.52 16 41 H 0.07 2.15 6.46 -2.39 -0.02 2.14 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.02 0.82 6.30 -2.39 -0.02 0.81 16 44 H 0.04 1.42 7.20 -2.39 -0.02 1.41 16 45 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.09 2.76 6.35 -2.39 -0.02 2.74 16 47 H 0.06 1.75 7.55 -2.39 -0.02 1.74 16 48 H 0.03 1.14 7.40 -2.39 -0.02 1.12 16 49 H 0.08 1.21 7.52 -2.39 -0.02 1.19 16 50 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 51 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -73.41 389.16 1.39 -72.02 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.57 Total: 34.86 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 5.75 Total: 1.68 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -5.59 Total: -113.13 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.08 Total: -37.69 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.88 Total: 42.27 kcal Total: -73.41 1.39 -72.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424190770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.968 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds