Wall clock time and date at job start Fri Apr 10 2020 18:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.49914 * 2 1 4 4 C 1.53245 * 109.49440 * 239.91652 * 2 1 3 5 5 N 1.47076 * 108.52016 * 186.21227 * 4 2 1 6 6 C 1.34776 * 120.88227 * 231.14192 * 5 4 2 7 7 O 1.21286 * 120.00000 * 4.04293 * 6 5 4 8 8 C 1.50693 * 120.00312 * 184.03557 * 6 5 4 9 9 C 1.53003 * 109.47389 * 172.41083 * 8 6 5 10 10 C 1.53005 * 109.47500 * 292.41296 * 8 6 5 11 11 C 1.53008 * 109.47208 * 52.41127 * 8 6 5 12 12 C 1.47086 * 118.26008 * 51.16775 * 5 4 2 13 13 C 1.53236 * 108.51831 * 308.85820 * 12 5 4 14 14 H 1.09002 * 109.49099 * 293.81105 * 13 12 5 15 15 C 1.53002 * 109.49445 * 173.76443 * 13 12 5 16 16 N 1.46896 * 109.36245 * 53.78962 * 13 12 5 17 17 C 1.46901 * 111.00084 * 172.76385 * 16 13 12 18 18 C 1.50701 * 109.47433 * 57.38148 * 17 16 13 19 19 O 1.21292 * 119.99748 * 3.00887 * 18 17 16 20 20 N 1.34774 * 119.99974 * 183.00116 * 18 17 16 21 21 C 1.37098 * 119.99975 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99769 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00304 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00170 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99511 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46974 * 90.00201 * 25 23 21 27 27 H 1.48502 * 109.46740 * 209.99769 * 25 23 21 28 28 H 1.48494 * 109.47412 * 330.00122 * 25 23 21 29 29 H 1.08999 * 109.47381 * 306.44390 * 1 2 3 30 30 H 1.09006 * 109.46686 * 66.43570 * 1 2 3 31 31 H 1.08997 * 109.47453 * 186.43694 * 1 2 3 32 32 H 1.08999 * 109.62301 * 305.92154 * 4 2 1 33 33 H 1.08994 * 109.62732 * 66.50212 * 4 2 1 34 34 H 1.09002 * 109.46985 * 60.00595 * 9 8 6 35 35 H 1.09001 * 109.47097 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47353 * 300.00524 * 9 8 6 37 37 H 1.09000 * 109.47103 * 51.57043 * 10 8 6 38 38 H 1.09000 * 109.47353 * 171.56935 * 10 8 6 39 39 H 1.09006 * 109.47037 * 291.57318 * 10 8 6 40 40 H 1.09003 * 109.46531 * 68.72884 * 11 8 6 41 41 H 1.08996 * 109.46791 * 188.72776 * 11 8 6 42 42 H 1.08994 * 109.46740 * 308.73424 * 11 8 6 43 43 H 1.09007 * 109.65365 * 189.13357 * 12 5 4 44 44 H 1.08997 * 109.60720 * 68.55376 * 12 5 4 45 45 H 1.09003 * 109.46981 * 293.42651 * 15 13 12 46 46 H 1.09005 * 109.47143 * 173.43062 * 15 13 12 47 47 H 1.08996 * 109.47183 * 53.42406 * 15 13 12 48 48 H 1.08999 * 109.47008 * 177.38688 * 17 16 13 49 49 H 1.09003 * 109.46723 * 297.38015 * 17 16 13 50 50 H 0.96997 * 120.00393 * 0.02562 * 20 18 17 51 51 H 0.96999 * 120.00126 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0414 -0.7241 -1.2500 5 7 3.5042 -0.8435 -1.1551 6 6 4.2977 -0.4505 -2.1711 7 8 3.8131 0.0762 -3.1503 8 6 5.7871 -0.6653 -2.0905 9 6 6.4271 -0.3096 -3.4339 10 6 6.3726 0.2274 -0.9944 11 6 6.0739 -2.1317 -1.7613 12 6 4.0786 -1.4038 0.0776 13 6 3.4866 -0.6533 1.2753 14 1 3.8235 0.3831 1.2578 15 6 3.9484 -1.3183 2.5735 16 7 2.0202 -0.6935 1.1987 17 6 1.4139 -0.1352 2.4147 18 6 1.9006 1.2768 2.6159 19 8 2.6330 1.7885 1.7956 20 7 1.5219 1.9710 3.7073 21 6 1.9642 3.2557 3.8901 22 1 2.6158 3.7116 3.1593 23 6 1.5742 3.9713 5.0156 24 7 1.9977 5.2029 5.1905 25 14 0.4466 3.1829 6.2791 26 1 1.2636 2.4906 7.3079 27 1 -0.3804 4.2322 6.9274 28 1 -0.4395 2.1994 5.6065 29 1 -0.3634 0.6104 0.8267 30 1 -0.3633 0.4109 -0.9420 31 1 -0.3634 -1.0211 0.1152 32 1 1.5957 -1.7173 -1.3058 33 1 1.7777 -0.1509 -2.1388 34 1 6.2229 0.7351 -3.6684 35 1 7.5044 -0.4654 -3.3757 36 1 6.0101 -0.9455 -4.2148 37 1 5.8147 0.0806 -0.0696 38 1 7.4185 -0.0339 -0.8331 39 1 6.3018 1.2714 -1.2997 40 1 5.7967 -2.7557 -2.6110 41 1 7.1361 -2.2557 -1.5505 42 1 5.4930 -2.4283 -0.8880 43 1 5.1616 -1.2798 0.0668 44 1 3.8292 -2.4624 0.1492 45 1 3.5137 -2.3153 2.6457 46 1 3.6247 -0.7185 3.4242 47 1 5.0357 -1.3950 2.5757 48 1 0.3288 -0.1344 2.3123 49 1 1.6973 -0.7431 3.2739 50 1 0.9364 1.5617 4.3635 51 1 1.7252 5.7025 5.9759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429408861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:36 Heat of formation + Delta-G solvation = -42.215742 kcal Electronic energy + Delta-G solvation = -30576.892027 eV Core-core repulsion = 26705.355437 eV Total energy + Delta-G solvation = -3871.536590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.88610 -39.41663 -37.36383 -35.97531 -34.58950 -33.82869 -33.41433 -31.78821 -29.57685 -27.89431 -27.48056 -27.27981 -26.39866 -25.73700 -23.94140 -21.95050 -21.11357 -20.06173 -19.40679 -18.79705 -18.03929 -16.63816 -16.41989 -16.05263 -15.78009 -15.21320 -14.94684 -14.88236 -14.62353 -14.24863 -14.11975 -13.75785 -13.60377 -13.15207 -12.80787 -12.74260 -12.65043 -12.41129 -12.37154 -12.29114 -12.18348 -11.97294 -11.82735 -11.73643 -11.54724 -11.41187 -11.30339 -11.26952 -11.09786 -11.03915 -10.69191 -10.66344 -10.41983 -10.38742 -10.07611 -9.55875 -9.45449 -9.37246 -8.54420 -8.25336 -7.52563 -6.39564 -3.90933 2.72547 2.96467 3.00674 3.05258 3.09784 3.60454 4.02776 4.08148 4.35021 4.59266 4.65810 4.76605 4.91496 4.98116 5.05509 5.16623 5.17951 5.36262 5.38942 5.41260 5.48452 5.48963 5.59055 5.60647 5.66644 5.70136 5.70590 5.75482 5.76545 5.81893 5.84639 5.86751 5.90179 5.92977 5.97671 6.13818 6.15702 6.19323 6.24658 6.27778 6.46946 6.61082 6.68184 7.16830 7.33260 7.47673 7.54107 8.06618 8.27445 8.49260 8.86199 9.33672 9.71977 10.73248 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.003587 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.058766 B = 7803.680977 C = 8155.742595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 H 0.082 0.918 4 C 0.125 3.875 5 N -0.605 5.605 6 C 0.526 3.474 7 O -0.546 6.546 8 C -0.085 4.085 9 C -0.125 4.125 10 C -0.153 4.153 11 C -0.162 4.162 12 C 0.101 3.899 13 C 0.041 3.959 14 H 0.097 0.903 15 C -0.144 4.144 16 N -0.502 5.502 17 C 0.031 3.969 18 C 0.416 3.584 19 O -0.574 6.574 20 N -0.583 5.583 21 C -0.307 4.307 22 H 0.118 0.882 23 C 0.043 3.957 24 N -0.878 5.878 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.371 0.629 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 -17.484 -7.866 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.056 4.056 3 H 0.100 0.900 4 C 0.002 3.998 5 N -0.337 5.337 6 C 0.314 3.686 7 O -0.424 6.424 8 C -0.089 4.089 9 C -0.182 4.182 10 C -0.210 4.210 11 C -0.219 4.219 12 C -0.022 4.022 13 C -0.067 4.067 14 H 0.115 0.885 15 C -0.202 4.202 16 N -0.226 5.226 17 C -0.101 4.101 18 C 0.202 3.798 19 O -0.459 6.459 20 N -0.221 5.221 21 C -0.436 4.436 22 H 0.136 0.864 23 C -0.160 4.160 24 N -0.517 5.517 25 Si 0.705 3.295 26 H -0.195 1.195 27 H -0.201 1.201 28 H -0.194 1.194 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.124 0.876 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.203 0.797 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.901 -17.154 -8.863 19.698 hybrid contribution -0.785 0.468 1.420 1.688 sum 3.115 -16.686 -7.444 18.535 Atomic orbital electron populations 1.21834 0.94260 1.02012 1.02092 1.22148 0.95177 0.98865 0.89379 0.90014 1.21724 0.79007 1.00642 0.98384 1.48036 1.06912 1.62547 1.16209 1.20562 0.88744 0.77163 0.82137 1.90655 1.76262 1.43096 1.32345 1.20754 0.91863 0.97581 0.98656 1.21646 0.99456 1.02682 0.94445 1.22140 1.01241 0.99838 0.97806 1.22363 1.02815 0.93676 1.03038 1.22522 0.99151 0.97434 0.83050 1.22391 0.88327 1.01970 0.94044 0.88511 1.21822 1.00713 1.00763 0.96894 1.62525 1.06347 1.52560 1.01213 1.22230 1.00671 0.92823 0.94336 1.21012 0.86210 0.88822 0.83756 1.90447 1.40112 1.70984 1.44381 1.42400 1.44425 1.14422 1.20881 1.19437 1.28561 0.87474 1.08164 0.86395 1.25071 0.97795 0.95588 0.97590 1.69621 1.44088 1.09271 1.28739 0.86679 0.81058 0.79595 0.82128 1.19548 1.20116 1.19408 0.92133 0.92184 0.92006 0.91435 0.89175 0.91782 0.92149 0.92314 0.90836 0.91332 0.91679 0.92215 0.91437 0.90339 0.87623 0.91208 0.92130 0.92053 0.92295 0.88811 0.89000 0.79659 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.49 37.16 0.32 -1.60 16 2 C 0.05 0.83 2.22 -67.59 -0.15 0.68 16 3 H 0.08 1.65 6.01 -51.93 -0.31 1.34 16 4 C 0.13 1.80 5.89 -3.60 -0.02 1.77 16 5 N -0.61 -8.56 3.00 -172.46 -0.52 -9.08 16 6 C 0.53 7.95 6.49 -10.99 -0.07 7.87 16 7 O -0.55 -10.10 15.43 5.55 0.09 -10.01 16 8 C -0.09 -0.98 0.75 -155.66 -0.12 -1.10 16 9 C -0.12 -1.37 7.78 37.16 0.29 -1.08 16 10 C -0.15 -1.73 8.13 37.16 0.30 -1.43 16 11 C -0.16 -1.43 8.08 37.16 0.30 -1.13 16 12 C 0.10 1.22 3.27 -3.60 -0.01 1.21 16 13 C 0.04 0.60 2.00 -67.59 -0.14 0.47 16 14 H 0.10 1.84 5.46 -51.93 -0.28 1.56 16 15 C -0.14 -1.78 8.46 37.16 0.31 -1.47 16 16 N -0.50 -7.41 4.52 -219.85 -0.99 -8.41 16 17 C 0.03 0.49 4.92 -4.98 -0.02 0.46 16 18 C 0.42 8.73 6.87 -10.99 -0.08 8.66 16 19 O -0.57 -14.04 11.23 5.55 0.06 -13.98 16 20 N -0.58 -13.22 5.09 -10.96 -0.06 -13.27 16 21 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 22 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -25.19 13.96 55.50 0.77 -24.42 16 25 Si 0.88 18.86 27.74 -169.99 -4.71 14.15 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 29 H 0.06 0.87 6.58 -51.93 -0.34 0.53 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.40 7.05 -51.93 -0.37 1.03 16 34 H 0.06 0.79 8.02 -51.93 -0.42 0.38 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.89 5.17 -51.93 -0.27 0.62 16 38 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 39 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 40 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 41 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 42 H 0.08 0.67 4.14 -51.93 -0.22 0.45 16 43 H 0.11 1.12 2.90 -51.93 -0.15 0.97 16 44 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.87 6.53 -51.93 -0.34 0.53 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.33 5.94 -51.93 -0.31 1.02 16 49 H 0.09 1.26 6.52 -51.93 -0.34 0.92 16 50 H 0.37 7.43 5.76 -40.82 -0.24 7.19 16 51 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -32.33 373.77 -7.24 -39.57 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -8.18 Total: 14.02 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 0.67 Total: 5.80 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.79 Total: -55.18 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.15 Total: -23.99 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.33 -7.24 -39.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429408861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.641 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds