Wall clock time and date at job start Fri Apr 10 2020 18:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.49914 * 2 1 4 4 C 1.53245 * 109.49440 * 239.91652 * 2 1 3 5 5 N 1.47076 * 108.52016 * 186.21227 * 4 2 1 6 6 C 1.34776 * 120.88227 * 231.14192 * 5 4 2 7 7 O 1.21286 * 120.00000 * 4.04293 * 6 5 4 8 8 C 1.50693 * 120.00312 * 184.03557 * 6 5 4 9 9 C 1.53003 * 109.47389 * 172.41083 * 8 6 5 10 10 C 1.53005 * 109.47500 * 292.41296 * 8 6 5 11 11 C 1.53008 * 109.47208 * 52.41127 * 8 6 5 12 12 C 1.47086 * 118.26008 * 51.16775 * 5 4 2 13 13 C 1.53236 * 108.51831 * 308.85820 * 12 5 4 14 14 H 1.09002 * 109.49099 * 293.81105 * 13 12 5 15 15 C 1.53002 * 109.49445 * 173.76443 * 13 12 5 16 16 N 1.46896 * 109.36245 * 53.78962 * 13 12 5 17 17 C 1.46901 * 111.00084 * 172.76385 * 16 13 12 18 18 C 1.50701 * 109.47433 * 57.38148 * 17 16 13 19 19 O 1.21292 * 119.99748 * 3.00887 * 18 17 16 20 20 N 1.34774 * 119.99974 * 183.00116 * 18 17 16 21 21 C 1.37098 * 119.99975 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99769 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00304 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00170 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99511 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46974 * 90.00201 * 25 23 21 27 27 H 1.48502 * 109.46740 * 209.99769 * 25 23 21 28 28 H 1.48494 * 109.47412 * 330.00122 * 25 23 21 29 29 H 1.08999 * 109.47381 * 306.44390 * 1 2 3 30 30 H 1.09006 * 109.46686 * 66.43570 * 1 2 3 31 31 H 1.08997 * 109.47453 * 186.43694 * 1 2 3 32 32 H 1.08999 * 109.62301 * 305.92154 * 4 2 1 33 33 H 1.08994 * 109.62732 * 66.50212 * 4 2 1 34 34 H 1.09002 * 109.46985 * 60.00595 * 9 8 6 35 35 H 1.09001 * 109.47097 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47353 * 300.00524 * 9 8 6 37 37 H 1.09000 * 109.47103 * 51.57043 * 10 8 6 38 38 H 1.09000 * 109.47353 * 171.56935 * 10 8 6 39 39 H 1.09006 * 109.47037 * 291.57318 * 10 8 6 40 40 H 1.09003 * 109.46531 * 68.72884 * 11 8 6 41 41 H 1.08996 * 109.46791 * 188.72776 * 11 8 6 42 42 H 1.08994 * 109.46740 * 308.73424 * 11 8 6 43 43 H 1.09007 * 109.65365 * 189.13357 * 12 5 4 44 44 H 1.08997 * 109.60720 * 68.55376 * 12 5 4 45 45 H 1.09003 * 109.46981 * 293.42651 * 15 13 12 46 46 H 1.09005 * 109.47143 * 173.43062 * 15 13 12 47 47 H 1.08996 * 109.47183 * 53.42406 * 15 13 12 48 48 H 1.08999 * 109.47008 * 177.38688 * 17 16 13 49 49 H 1.09003 * 109.46723 * 297.38015 * 17 16 13 50 50 H 0.96997 * 120.00393 * 0.02562 * 20 18 17 51 51 H 0.96999 * 120.00126 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0414 -0.7241 -1.2500 5 7 3.5042 -0.8435 -1.1551 6 6 4.2977 -0.4505 -2.1711 7 8 3.8131 0.0762 -3.1503 8 6 5.7871 -0.6653 -2.0905 9 6 6.4271 -0.3096 -3.4339 10 6 6.3726 0.2274 -0.9944 11 6 6.0739 -2.1317 -1.7613 12 6 4.0786 -1.4038 0.0776 13 6 3.4866 -0.6533 1.2753 14 1 3.8235 0.3831 1.2578 15 6 3.9484 -1.3183 2.5735 16 7 2.0202 -0.6935 1.1987 17 6 1.4139 -0.1352 2.4147 18 6 1.9006 1.2768 2.6159 19 8 2.6330 1.7885 1.7956 20 7 1.5219 1.9710 3.7073 21 6 1.9642 3.2557 3.8901 22 1 2.6158 3.7116 3.1593 23 6 1.5742 3.9713 5.0156 24 7 1.9977 5.2029 5.1905 25 14 0.4466 3.1829 6.2791 26 1 1.2636 2.4906 7.3079 27 1 -0.3804 4.2322 6.9274 28 1 -0.4395 2.1994 5.6065 29 1 -0.3634 0.6104 0.8267 30 1 -0.3633 0.4109 -0.9420 31 1 -0.3634 -1.0211 0.1152 32 1 1.5957 -1.7173 -1.3058 33 1 1.7777 -0.1509 -2.1388 34 1 6.2229 0.7351 -3.6684 35 1 7.5044 -0.4654 -3.3757 36 1 6.0101 -0.9455 -4.2148 37 1 5.8147 0.0806 -0.0696 38 1 7.4185 -0.0339 -0.8331 39 1 6.3018 1.2714 -1.2997 40 1 5.7967 -2.7557 -2.6110 41 1 7.1361 -2.2557 -1.5505 42 1 5.4930 -2.4283 -0.8880 43 1 5.1616 -1.2798 0.0668 44 1 3.8292 -2.4624 0.1492 45 1 3.5137 -2.3153 2.6457 46 1 3.6247 -0.7185 3.4242 47 1 5.0357 -1.3950 2.5757 48 1 0.3288 -0.1344 2.3123 49 1 1.6973 -0.7431 3.2739 50 1 0.9364 1.5617 4.3635 51 1 1.7252 5.7025 5.9759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429408861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:34 Heat of formation + Delta-G solvation = -67.081003 kcal Electronic energy + Delta-G solvation = -30577.970266 eV Core-core repulsion = 26705.355437 eV Total energy + Delta-G solvation = -3872.614828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.06957 -40.86034 -38.85918 -37.05190 -36.15332 -35.39418 -34.55075 -33.79587 -30.86583 -28.87507 -28.49889 -28.32377 -27.38985 -27.20322 -25.53178 -23.07808 -22.26440 -21.48686 -21.14344 -20.08523 -19.63885 -17.84488 -17.70900 -17.50563 -16.93195 -16.78204 -16.27941 -16.20377 -15.98346 -15.53674 -15.21309 -15.09116 -14.90741 -14.66872 -14.30516 -14.00446 -13.97701 -13.81957 -13.35195 -13.25218 -13.16896 -13.01652 -12.88683 -12.81421 -12.71116 -12.57559 -12.51612 -12.47145 -12.44718 -12.20834 -12.02639 -11.95423 -11.88970 -11.73957 -11.38951 -11.28848 -11.04605 -10.57999 -10.23332 -9.73984 -9.00150 -8.44255 -6.04652 1.28216 1.33008 1.42368 1.55379 1.91292 1.96917 2.20523 2.86101 2.95821 3.13008 3.35516 3.74299 3.83010 3.85521 3.89179 4.02994 4.13981 4.19570 4.26192 4.32226 4.42318 4.50190 4.55714 4.58788 4.60863 4.64041 4.66330 4.74447 4.77647 4.80165 4.84549 4.88773 4.92438 5.00136 5.04730 5.11728 5.17190 5.21509 5.25377 5.28888 5.33485 5.46949 5.48829 5.50779 5.88391 5.97258 6.07231 6.40282 6.55640 6.86527 7.10711 7.37139 7.94279 8.73531 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.003587 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.058766 B = 7803.680977 C = 8155.742595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.055 3.945 3 H 0.024 0.976 4 C 0.128 3.872 5 N -0.608 5.608 6 C 0.512 3.488 7 O -0.592 6.592 8 C -0.083 4.083 9 C -0.123 4.123 10 C -0.150 4.150 11 C -0.156 4.156 12 C 0.105 3.895 13 C 0.038 3.962 14 H 0.044 0.956 15 C -0.138 4.138 16 N -0.483 5.483 17 C 0.039 3.961 18 C 0.420 3.580 19 O -0.612 6.612 20 N -0.588 5.588 21 C -0.326 4.326 22 H 0.050 0.950 23 C -0.015 4.015 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.255 1.255 27 H -0.278 1.278 28 H -0.230 1.230 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.040 0.960 47 H 0.076 0.924 48 H 0.119 0.881 49 H 0.126 0.874 50 H 0.389 0.611 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 -22.430 -6.344 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.054 4.054 3 H 0.042 0.958 4 C 0.005 3.995 5 N -0.339 5.339 6 C 0.302 3.698 7 O -0.473 6.473 8 C -0.086 4.086 9 C -0.180 4.180 10 C -0.207 4.207 11 C -0.212 4.212 12 C -0.017 4.017 13 C -0.071 4.071 14 H 0.062 0.938 15 C -0.196 4.196 16 N -0.206 5.206 17 C -0.093 4.093 18 C 0.208 3.792 19 O -0.498 6.498 20 N -0.230 5.230 21 C -0.455 4.455 22 H 0.068 0.932 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.179 1.179 27 H -0.203 1.203 28 H -0.153 1.153 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.140 0.860 44 H 0.119 0.881 45 H 0.108 0.892 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.137 0.863 49 H 0.143 0.857 50 H 0.224 0.776 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.200 -22.143 -7.343 23.547 hybrid contribution -0.457 2.078 0.784 2.268 sum 2.742 -20.065 -6.559 21.287 Atomic orbital electron populations 1.21805 0.92233 1.03616 1.01976 1.22055 0.96835 0.95956 0.90555 0.95811 1.21676 0.79618 1.01463 0.96769 1.48208 1.06894 1.62050 1.16730 1.21383 0.90475 0.76257 0.81653 1.90624 1.77353 1.45075 1.34221 1.20830 0.89004 0.99840 0.98897 1.21644 1.01265 1.00981 0.94123 1.22136 1.03101 0.98402 0.97096 1.22348 1.04663 0.90880 1.03351 1.22700 0.99901 0.98308 0.80756 1.22391 0.88105 0.99845 0.96794 0.93778 1.21801 1.02152 1.01395 0.94280 1.62658 1.06574 1.50850 1.00493 1.22426 1.02058 0.88828 0.95938 1.22294 0.84190 0.90637 0.82074 1.90490 1.41289 1.72512 1.45478 1.42234 1.45567 1.12920 1.22254 1.18954 1.29004 0.89910 1.07642 0.93153 1.26133 0.99478 0.95874 0.99870 1.69811 1.46212 1.11558 1.30042 0.85382 0.78685 0.79181 0.78399 1.17906 1.20275 1.15349 0.93263 0.91756 0.89012 0.88592 0.91228 0.94323 0.89162 0.92668 0.91869 0.88053 0.94327 0.91901 0.88799 0.89735 0.86036 0.88081 0.89204 0.94106 0.90511 0.86280 0.85658 0.77593 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.49 71.98 0.61 -2.88 16 2 C 0.06 1.73 2.22 44.99 0.10 1.83 16 3 H 0.02 1.03 6.01 -2.39 -0.01 1.02 16 4 C 0.13 3.62 5.89 86.35 0.51 4.13 16 5 N -0.61 -16.96 3.00 -817.94 -2.45 -19.41 16 6 C 0.51 15.79 6.49 87.65 0.57 16.36 16 7 O -0.59 -23.11 15.43 -3.05 -0.05 -23.16 16 8 C -0.08 -1.83 0.75 -52.92 -0.04 -1.87 16 9 C -0.12 -2.64 7.78 71.98 0.56 -2.08 16 10 C -0.15 -3.35 8.13 71.98 0.58 -2.77 16 11 C -0.16 -2.23 8.08 71.98 0.58 -1.65 16 12 C 0.10 2.29 3.27 86.35 0.28 2.57 16 13 C 0.04 1.05 2.00 45.00 0.09 1.14 16 14 H 0.04 1.76 5.46 -2.39 -0.01 1.74 16 15 C -0.14 -3.01 8.46 71.98 0.61 -2.40 16 16 N -0.48 -13.33 4.52 -849.47 -3.84 -17.17 16 17 C 0.04 1.13 4.92 85.56 0.42 1.55 16 18 C 0.42 17.97 6.87 87.66 0.60 18.57 16 19 O -0.61 -32.05 11.23 -3.07 -0.03 -32.08 16 20 N -0.59 -26.91 5.09 -306.98 -1.56 -28.48 16 21 C -0.33 -18.83 10.16 84.04 0.85 -17.98 16 22 H 0.05 3.51 7.39 -2.91 -0.02 3.49 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 24 N -0.94 -56.41 13.96 21.66 0.30 -56.11 16 25 Si 0.96 38.24 27.74 68.60 1.90 40.14 16 26 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 27 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.23 -7.63 6.52 99.48 0.65 -6.99 16 29 H 0.05 1.34 6.58 -2.39 -0.02 1.33 16 30 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.26 7.05 -2.39 -0.02 2.24 16 34 H 0.04 1.01 8.02 -2.39 -0.02 0.99 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.54 5.17 -2.39 -0.01 1.52 16 38 H 0.10 1.57 8.07 -2.39 -0.02 1.55 16 39 H 0.04 1.04 8.13 -2.38 -0.02 1.02 16 40 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 41 H 0.09 0.90 8.07 -2.39 -0.02 0.88 16 42 H 0.08 1.10 4.14 -2.39 -0.01 1.09 16 43 H 0.12 2.28 2.90 -2.38 -0.01 2.27 16 44 H 0.10 1.67 7.87 -2.39 -0.02 1.65 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.04 1.06 6.53 -2.38 -0.02 1.04 16 47 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.12 2.94 5.94 -2.39 -0.01 2.93 16 49 H 0.13 2.91 6.52 -2.39 -0.02 2.89 16 50 H 0.39 14.73 5.76 -92.71 -0.53 14.19 16 51 H 0.28 15.37 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -81.47 373.77 1.42 -80.05 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: 0.35 Total: 42.05 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 6.80 Total: 14.16 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -7.56 Total: -121.16 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -0.08 Total: -55.24 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.14 kcal Total: -81.47 1.42 -80.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429408861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.966 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds