Wall clock time and date at job start Fri Apr 10 2020 18:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 H 1.09004 * 109.30397 * 179.79964 * 3 2 1 5 5 C 1.50255 * 109.38977 * 60.05255 * 3 2 1 6 6 O 1.21275 * 118.62213 * 42.92816 * 5 3 2 7 7 N 1.33717 * 122.75225 * 222.64479 * 5 3 2 8 8 C 1.46491 * 118.53645 * 181.70461 * 7 5 3 9 9 C 1.53008 * 109.47081 * 90.00323 * 8 7 5 10 10 C 1.46015 * 122.92755 * 1.68861 * 7 5 3 11 11 C 1.52987 * 110.04055 * 341.83557 * 10 7 5 12 12 N 1.46899 * 109.38312 * 299.53403 * 3 2 1 13 13 C 1.46905 * 111.00286 * 293.81881 * 12 3 2 14 14 C 1.50703 * 109.47232 * 161.00196 * 13 12 3 15 15 O 1.21284 * 119.99931 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00190 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99681 * 0.02562 * 16 14 13 18 18 C 1.53007 * 109.47021 * 89.99807 * 17 16 14 19 19 C 1.46493 * 120.00384 * 180.02562 * 16 14 13 20 20 C 1.50702 * 109.47046 * 89.99972 * 19 16 14 21 21 H 1.07996 * 119.99875 * 0.02562 * 20 19 16 22 22 C 1.37879 * 119.99972 * 180.02562 * 20 19 16 23 23 N 1.31510 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47638 * 89.99701 * 24 22 20 26 26 H 1.48499 * 109.46753 * 210.00002 * 24 22 20 27 27 H 1.48499 * 109.47268 * 329.99600 * 24 22 20 28 28 H 1.09000 * 109.47905 * 304.83945 * 1 2 3 29 29 H 1.09005 * 109.46761 * 64.83765 * 1 2 3 30 30 H 1.09001 * 109.47305 * 184.83289 * 1 2 3 31 31 H 1.08994 * 109.47677 * 239.99368 * 2 1 3 32 32 H 1.09004 * 109.46930 * 119.99206 * 2 1 3 33 33 H 1.09005 * 109.47623 * 210.00000 * 8 7 5 34 34 H 1.08999 * 109.47770 * 330.00688 * 8 7 5 35 35 H 1.09003 * 109.46500 * 60.00107 * 9 8 7 36 36 H 1.09000 * 109.47158 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.46851 * 300.00226 * 9 8 7 38 38 H 1.08997 * 109.37521 * 102.00748 * 10 7 5 39 39 H 1.08996 * 109.37507 * 221.66480 * 10 7 5 40 40 H 1.08995 * 109.59267 * 170.06318 * 11 10 7 41 41 H 1.08999 * 109.59646 * 290.52072 * 11 10 7 42 42 H 1.09001 * 109.46978 * 281.00582 * 13 12 3 43 43 H 1.08997 * 109.46722 * 41.00352 * 13 12 3 44 44 H 1.08995 * 109.47193 * 209.99484 * 17 16 14 45 45 H 1.08993 * 109.47076 * 329.99905 * 17 16 14 46 46 H 1.08995 * 109.46872 * 299.99872 * 18 17 16 47 47 H 1.08994 * 109.46703 * 59.99778 * 18 17 16 48 48 H 1.08996 * 109.47054 * 179.97438 * 18 17 16 49 49 H 1.09000 * 109.47662 * 210.00316 * 19 16 14 50 50 H 1.08999 * 109.47211 * 330.00418 * 19 16 14 51 51 H 0.96996 * 119.99906 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4393 0.0036 5 6 1.5391 2.1487 1.2281 6 8 1.5709 1.5621 2.2891 7 7 1.0650 3.3986 1.2011 8 6 0.6357 4.0116 2.4604 9 6 1.8197 4.7354 3.1050 10 6 0.9564 4.1800 -0.0276 11 6 1.8427 3.5713 -1.1160 12 7 1.5584 2.1298 -1.2057 13 6 2.1555 1.5500 -2.4162 14 6 1.3268 1.9295 -3.6164 15 8 0.3366 2.6159 -3.4771 16 7 1.6859 1.5062 -4.8444 17 6 2.8817 0.6766 -5.0126 18 6 2.4985 -0.8001 -4.8954 19 6 0.8808 1.8756 -6.0112 20 6 1.3921 3.1722 -6.5842 21 1 2.2330 3.6710 -6.1255 22 6 0.7863 3.7218 -7.6942 23 7 -0.2374 3.1142 -8.2532 24 14 1.4205 5.3286 -8.4049 25 1 2.4630 5.0424 -9.4230 26 1 0.2985 6.0663 -9.0391 27 1 2.0041 6.1547 -7.3176 28 1 -0.3635 0.5871 0.8434 29 1 -0.3633 0.4370 -0.9302 30 1 -0.3634 -1.0240 0.0866 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 -0.1632 4.7265 2.2629 34 1 0.2717 3.2375 3.1359 35 1 2.1836 5.5096 2.4295 36 1 1.5001 5.1919 4.0418 37 1 2.6185 4.0206 3.3026 38 1 -0.0802 4.1818 -0.3645 39 1 1.2738 5.2045 0.1661 40 1 1.6257 4.0469 -2.0724 41 1 2.8914 3.7218 -0.8600 42 1 3.1693 1.9308 -2.5395 43 1 2.1839 0.4644 -2.3230 44 1 3.3175 0.8620 -5.9943 45 1 3.6084 0.9258 -4.2395 46 1 2.0628 -0.9855 -3.9138 47 1 1.7718 -1.0492 -5.6686 48 1 3.3881 -1.4173 -5.0210 49 1 0.9525 1.0917 -6.7652 50 1 -0.1600 1.9965 -5.7108 51 1 -0.6633 3.5006 -9.0342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495205825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:53 Heat of formation + Delta-G solvation = -57.137184 kcal Electronic energy + Delta-G solvation = -29870.765755 eV Core-core repulsion = 25998.582124 eV Total energy + Delta-G solvation = -3872.183632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.93350 -39.13877 -37.11570 -36.29693 -35.21050 -32.93719 -32.80841 -31.52960 -30.10813 -29.08838 -28.51807 -26.82418 -25.12581 -24.05446 -23.04834 -22.71295 -22.18803 -21.16247 -18.57011 -18.35996 -17.44449 -16.74297 -16.50782 -16.15629 -15.76471 -15.55907 -15.27915 -14.57341 -14.50041 -14.26860 -14.10098 -13.97590 -13.75804 -13.38214 -13.18686 -13.15256 -12.75892 -12.63079 -12.35286 -12.21609 -12.17239 -12.01873 -11.77619 -11.60490 -11.49259 -11.33026 -11.21624 -11.14870 -10.94189 -10.92417 -10.75630 -10.73297 -10.54306 -10.14186 -9.78686 -9.64556 -8.98119 -8.78840 -8.45408 -8.33172 -7.65322 -6.05972 -4.10842 2.55147 2.86475 3.27481 3.34229 3.36506 3.42039 3.45894 4.11042 4.33425 4.42718 4.65385 4.76710 4.88010 4.96618 4.97724 5.10400 5.10967 5.18593 5.21587 5.27106 5.29972 5.31748 5.39146 5.50380 5.51420 5.60324 5.62674 5.73695 5.76214 5.76879 5.81389 5.92570 5.97796 6.00403 6.04548 6.18617 6.21407 6.30819 6.45851 6.51926 6.72311 6.84496 7.10154 7.33298 7.45132 7.55221 7.90795 8.08776 8.22311 8.43651 8.89335 9.12732 9.54463 11.01982 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.003539 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.433800 B = 7909.242283 C = 9137.504713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C 0.068 3.932 4 H 0.071 0.929 5 C 0.533 3.467 6 O -0.551 6.551 7 N -0.601 5.601 8 C 0.104 3.896 9 C -0.165 4.165 10 C 0.121 3.879 11 C 0.039 3.961 12 N -0.504 5.504 13 C 0.030 3.970 14 C 0.508 3.492 15 O -0.521 6.521 16 N -0.600 5.600 17 C 0.106 3.894 18 C -0.169 4.169 19 C 0.249 3.751 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.897 3.103 25 H -0.281 1.281 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.030 0.970 50 H 0.043 0.957 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.920 -2.819 16.971 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C -0.043 4.043 4 H 0.089 0.911 5 C 0.321 3.679 6 O -0.428 6.428 7 N -0.334 5.334 8 C -0.018 4.018 9 C -0.223 4.223 10 C -0.002 4.002 11 C -0.089 4.089 12 N -0.229 5.229 13 C -0.101 4.101 14 C 0.293 3.707 15 O -0.397 6.397 16 N -0.333 5.333 17 C -0.018 4.018 18 C -0.228 4.228 19 C 0.130 3.870 20 C -0.564 4.564 21 H 0.074 0.926 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.725 3.275 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.048 0.952 50 H 0.061 0.939 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.735 -2.792 17.390 18.523 hybrid contribution 1.338 1.076 -0.662 1.840 sum 7.073 -1.716 16.728 18.243 Atomic orbital electron populations 1.21649 0.94486 1.00959 1.02968 1.21457 0.97853 0.92345 1.02425 1.21839 0.98412 0.95896 0.88153 0.91111 1.19879 0.76912 0.80958 0.90139 1.90677 1.56218 1.64934 1.31006 1.47533 1.63018 1.14125 1.08704 1.21454 0.96807 0.97786 0.85789 1.22098 0.99115 1.00496 1.00633 1.21539 1.01776 0.94238 0.82669 1.22553 0.96858 0.88616 1.00913 1.62087 1.58233 1.02510 1.00119 1.22219 0.96540 1.01440 0.89896 1.20015 0.85953 0.81084 0.83615 1.90666 1.26695 1.37283 1.85025 1.48259 1.26980 1.50111 1.07929 1.21403 0.87831 0.89910 1.02662 1.22227 1.01716 0.96767 1.02082 1.19232 0.91633 0.95205 0.80974 1.21422 1.15843 1.07208 1.11969 0.92595 1.24928 0.94859 0.97543 0.96742 1.69927 1.21875 1.39434 1.22052 0.86523 0.78385 0.83562 0.79077 1.20701 1.21106 1.19970 0.93219 0.91062 0.93210 0.91069 0.90506 0.90495 0.89658 0.92628 0.91629 0.92391 0.90090 0.90429 0.87224 0.94294 0.92030 0.87986 0.89976 0.92052 0.93085 0.91959 0.92226 0.95159 0.93878 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.53 37.15 0.35 -1.52 16 2 C -0.10 -1.21 5.28 -26.73 -0.14 -1.35 16 3 C 0.07 0.85 2.19 -69.08 -0.15 0.70 16 4 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 5 C 0.53 7.30 5.83 -11.67 -0.07 7.23 16 6 O -0.55 -8.77 15.41 5.56 0.09 -8.68 16 7 N -0.60 -7.22 2.83 -174.58 -0.49 -7.72 16 8 C 0.10 1.05 6.00 -4.04 -0.02 1.03 16 9 C -0.17 -1.44 10.23 37.16 0.38 -1.06 16 10 C 0.12 1.37 6.57 -4.31 -0.03 1.35 16 11 C 0.04 0.50 5.19 -3.67 -0.02 0.48 16 12 N -0.50 -6.90 3.37 -229.49 -0.77 -7.67 16 13 C 0.03 0.41 3.88 -4.97 -0.02 0.39 16 14 C 0.51 9.78 7.32 -10.99 -0.08 9.70 16 15 O -0.52 -12.21 14.87 5.55 0.08 -12.12 16 16 N -0.60 -11.90 2.46 -175.06 -0.43 -12.33 16 17 C 0.11 1.59 5.93 -4.04 -0.02 1.56 16 18 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 19 C 0.25 6.26 5.16 -5.20 -0.03 6.24 16 20 C -0.53 -14.39 9.39 -34.44 -0.32 -14.72 16 21 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 24 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.05 0.71 6.94 -51.93 -0.36 0.35 16 29 H 0.07 1.07 7.77 -51.93 -0.40 0.67 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.74 6.23 -51.93 -0.32 0.42 16 32 H 0.08 0.89 7.82 -51.93 -0.41 0.48 16 33 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 34 H 0.09 0.97 7.21 -51.93 -0.37 0.59 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 40 H 0.11 1.66 6.77 -51.93 -0.35 1.31 16 41 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 42 H 0.06 0.75 7.26 -51.93 -0.38 0.38 16 43 H 0.10 1.23 4.93 -51.93 -0.26 0.97 16 44 H 0.08 1.29 8.07 -51.93 -0.42 0.88 16 45 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 46 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 50 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 51 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -33.10 398.90 -8.66 -41.76 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.97 Total: -0.08 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 0.11 Total: 9.88 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.96 Total: -53.08 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.17 Total: -20.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.10 -8.66 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495205825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.375 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds