Wall clock time and date at job start Fri Apr 10 2020 18:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 H 1.09004 * 109.30397 * 179.79964 * 3 2 1 5 5 C 1.50255 * 109.38977 * 60.05255 * 3 2 1 6 6 O 1.21275 * 118.62213 * 42.92816 * 5 3 2 7 7 N 1.33717 * 122.75225 * 222.64479 * 5 3 2 8 8 C 1.46491 * 118.53645 * 181.70461 * 7 5 3 9 9 C 1.53008 * 109.47081 * 90.00323 * 8 7 5 10 10 C 1.46015 * 122.92755 * 1.68861 * 7 5 3 11 11 C 1.52987 * 110.04055 * 341.83557 * 10 7 5 12 12 N 1.46899 * 109.38312 * 299.53403 * 3 2 1 13 13 C 1.46905 * 111.00286 * 293.81881 * 12 3 2 14 14 C 1.50703 * 109.47232 * 161.00196 * 13 12 3 15 15 O 1.21284 * 119.99931 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00190 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99681 * 0.02562 * 16 14 13 18 18 C 1.53007 * 109.47021 * 89.99807 * 17 16 14 19 19 C 1.46493 * 120.00384 * 180.02562 * 16 14 13 20 20 C 1.50702 * 109.47046 * 89.99972 * 19 16 14 21 21 H 1.07996 * 119.99875 * 0.02562 * 20 19 16 22 22 C 1.37879 * 119.99972 * 180.02562 * 20 19 16 23 23 N 1.31510 * 120.00007 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47638 * 89.99701 * 24 22 20 26 26 H 1.48499 * 109.46753 * 210.00002 * 24 22 20 27 27 H 1.48499 * 109.47268 * 329.99600 * 24 22 20 28 28 H 1.09000 * 109.47905 * 304.83945 * 1 2 3 29 29 H 1.09005 * 109.46761 * 64.83765 * 1 2 3 30 30 H 1.09001 * 109.47305 * 184.83289 * 1 2 3 31 31 H 1.08994 * 109.47677 * 239.99368 * 2 1 3 32 32 H 1.09004 * 109.46930 * 119.99206 * 2 1 3 33 33 H 1.09005 * 109.47623 * 210.00000 * 8 7 5 34 34 H 1.08999 * 109.47770 * 330.00688 * 8 7 5 35 35 H 1.09003 * 109.46500 * 60.00107 * 9 8 7 36 36 H 1.09000 * 109.47158 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.46851 * 300.00226 * 9 8 7 38 38 H 1.08997 * 109.37521 * 102.00748 * 10 7 5 39 39 H 1.08996 * 109.37507 * 221.66480 * 10 7 5 40 40 H 1.08995 * 109.59267 * 170.06318 * 11 10 7 41 41 H 1.08999 * 109.59646 * 290.52072 * 11 10 7 42 42 H 1.09001 * 109.46978 * 281.00582 * 13 12 3 43 43 H 1.08997 * 109.46722 * 41.00352 * 13 12 3 44 44 H 1.08995 * 109.47193 * 209.99484 * 17 16 14 45 45 H 1.08993 * 109.47076 * 329.99905 * 17 16 14 46 46 H 1.08995 * 109.46872 * 299.99872 * 18 17 16 47 47 H 1.08994 * 109.46703 * 59.99778 * 18 17 16 48 48 H 1.08996 * 109.47054 * 179.97438 * 18 17 16 49 49 H 1.09000 * 109.47662 * 210.00316 * 19 16 14 50 50 H 1.08999 * 109.47211 * 330.00418 * 19 16 14 51 51 H 0.96996 * 119.99906 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1300 1.4393 0.0036 5 6 1.5391 2.1487 1.2281 6 8 1.5709 1.5621 2.2891 7 7 1.0650 3.3986 1.2011 8 6 0.6357 4.0116 2.4604 9 6 1.8197 4.7354 3.1050 10 6 0.9564 4.1800 -0.0276 11 6 1.8427 3.5713 -1.1160 12 7 1.5584 2.1298 -1.2057 13 6 2.1555 1.5500 -2.4162 14 6 1.3268 1.9295 -3.6164 15 8 0.3366 2.6159 -3.4771 16 7 1.6859 1.5062 -4.8444 17 6 2.8817 0.6766 -5.0126 18 6 2.4985 -0.8001 -4.8954 19 6 0.8808 1.8756 -6.0112 20 6 1.3921 3.1722 -6.5842 21 1 2.2330 3.6710 -6.1255 22 6 0.7863 3.7218 -7.6942 23 7 -0.2374 3.1142 -8.2532 24 14 1.4205 5.3286 -8.4049 25 1 2.4630 5.0424 -9.4230 26 1 0.2985 6.0663 -9.0391 27 1 2.0041 6.1547 -7.3176 28 1 -0.3635 0.5871 0.8434 29 1 -0.3633 0.4370 -0.9302 30 1 -0.3634 -1.0240 0.0866 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 -0.1632 4.7265 2.2629 34 1 0.2717 3.2375 3.1359 35 1 2.1836 5.5096 2.4295 36 1 1.5001 5.1919 4.0418 37 1 2.6185 4.0206 3.3026 38 1 -0.0802 4.1818 -0.3645 39 1 1.2738 5.2045 0.1661 40 1 1.6257 4.0469 -2.0724 41 1 2.8914 3.7218 -0.8600 42 1 3.1693 1.9308 -2.5395 43 1 2.1839 0.4644 -2.3230 44 1 3.3175 0.8620 -5.9943 45 1 3.6084 0.9258 -4.2395 46 1 2.0628 -0.9855 -3.9138 47 1 1.7718 -1.0492 -5.6686 48 1 3.3881 -1.4173 -5.0210 49 1 0.9525 1.0917 -6.7652 50 1 -0.1600 1.9965 -5.7108 51 1 -0.6633 3.5006 -9.0342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495205825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:52 Heat of formation + Delta-G solvation = -78.690798 kcal Electronic energy + Delta-G solvation = -29871.700390 eV Core-core repulsion = 25998.582124 eV Total energy + Delta-G solvation = -3873.118267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.95994 -40.57677 -38.27077 -37.25253 -36.76912 -34.87627 -33.88319 -32.50585 -31.54314 -30.12599 -29.76054 -28.40924 -26.30369 -25.22369 -24.49614 -23.84673 -23.40509 -22.17277 -19.84552 -19.50899 -18.61033 -18.48851 -17.77929 -17.54401 -17.07246 -16.71243 -16.47492 -16.15917 -15.72099 -15.35826 -15.24286 -15.15379 -14.65735 -14.61544 -14.44241 -14.29915 -14.12442 -13.78608 -13.57629 -13.48869 -13.23545 -13.12341 -13.02875 -12.99311 -12.72177 -12.65471 -12.51373 -12.42073 -12.36401 -12.12181 -12.01642 -11.91299 -11.79169 -11.75120 -11.66046 -10.84580 -10.60950 -10.45747 -9.75556 -9.39573 -9.33924 -8.18447 -6.33182 1.38551 1.41093 1.51085 1.52954 1.94010 1.96887 2.18816 2.41951 2.85813 3.11118 3.37237 3.66130 3.72646 3.92724 4.01935 4.09254 4.13902 4.16442 4.22093 4.30628 4.34328 4.36930 4.49014 4.49882 4.54678 4.63284 4.69383 4.73136 4.76163 4.87078 4.97128 4.98402 4.98959 5.04627 5.07865 5.11064 5.17291 5.25336 5.27772 5.38529 5.44112 5.47623 5.63038 5.73766 5.86211 5.94323 6.11598 6.36321 6.75981 6.91308 7.08447 7.33684 7.62360 8.88270 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.003539 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.433800 B = 7909.242283 C = 9137.504713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C 0.072 3.928 4 H 0.094 0.906 5 C 0.526 3.474 6 O -0.579 6.579 7 N -0.600 5.600 8 C 0.099 3.901 9 C -0.156 4.156 10 C 0.124 3.876 11 C 0.040 3.960 12 N -0.522 5.522 13 C 0.046 3.954 14 C 0.501 3.499 15 O -0.574 6.574 16 N -0.606 5.606 17 C 0.100 3.900 18 C -0.162 4.162 19 C 0.266 3.734 20 C -0.537 4.537 21 H 0.055 0.945 22 C 0.007 3.993 23 N -0.930 5.930 24 Si 0.966 3.034 25 H -0.266 1.266 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.127 0.873 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.035 0.965 48 H 0.094 0.906 49 H 0.017 0.983 50 H -0.006 1.006 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.666 -2.562 18.001 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.039 4.039 4 H 0.112 0.888 5 C 0.315 3.685 6 O -0.459 6.459 7 N -0.332 5.332 8 C -0.023 4.023 9 C -0.214 4.214 10 C 0.002 3.998 11 C -0.088 4.088 12 N -0.249 5.249 13 C -0.084 4.084 14 C 0.288 3.712 15 O -0.453 6.453 16 N -0.339 5.339 17 C -0.023 4.023 18 C -0.220 4.220 19 C 0.145 3.855 20 C -0.576 4.576 21 H 0.073 0.927 22 C -0.192 4.192 23 N -0.570 5.570 24 Si 0.791 3.209 25 H -0.191 1.191 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.145 0.855 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.080 0.920 47 H 0.055 0.945 48 H 0.113 0.887 49 H 0.035 0.965 50 H 0.013 0.987 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.521 -2.549 18.432 20.465 hybrid contribution 0.414 0.977 -0.956 1.428 sum 8.935 -1.572 17.475 19.690 Atomic orbital electron populations 1.21552 0.95930 1.01117 1.00746 1.21482 0.96430 0.92296 1.03611 1.21866 0.99598 0.95702 0.86738 0.88821 1.20167 0.76850 0.81306 0.90221 1.90663 1.57646 1.65589 1.31994 1.47635 1.62210 1.13916 1.09438 1.21605 0.98059 0.97723 0.84871 1.22021 0.97788 1.00045 1.01569 1.21529 1.00644 0.95467 0.82183 1.22495 0.98297 0.88077 0.99917 1.61974 1.59265 1.03114 1.00527 1.22093 0.96190 1.02885 0.87244 1.21012 0.85732 0.79789 0.84620 1.90640 1.29212 1.39584 1.85881 1.48266 1.27916 1.50880 1.06810 1.21729 0.86473 0.90563 1.03496 1.22166 1.02662 0.95406 1.01796 1.18618 0.90066 0.94333 0.82530 1.21716 1.15753 1.08006 1.12124 0.92653 1.25851 0.94983 1.01176 0.97209 1.70059 1.23155 1.41213 1.22602 0.85437 0.78018 0.78983 0.78498 1.19078 1.20981 1.19444 0.95058 0.93464 0.91938 0.89033 0.89989 0.88657 0.91287 0.91652 0.89880 0.94161 0.91937 0.87622 0.89974 0.92051 0.89174 0.85511 0.91183 0.88115 0.91987 0.94545 0.88723 0.96524 0.98745 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.53 71.98 0.69 -2.79 16 2 C -0.10 -2.12 5.28 30.59 0.16 -1.96 16 3 C 0.07 1.61 2.19 44.03 0.10 1.70 16 4 H 0.09 1.71 8.12 -2.38 -0.02 1.69 16 5 C 0.53 13.74 5.83 87.68 0.51 14.25 16 6 O -0.58 -18.00 15.41 -3.01 -0.05 -18.05 16 7 N -0.60 -13.75 2.83 -825.24 -2.33 -16.08 16 8 C 0.10 1.89 6.00 86.38 0.52 2.41 16 9 C -0.16 -2.43 10.23 71.98 0.74 -1.70 16 10 C 0.12 2.70 6.57 86.47 0.57 3.27 16 11 C 0.04 0.97 5.19 86.24 0.45 1.42 16 12 N -0.52 -13.48 3.37 -879.96 -2.96 -16.44 16 13 C 0.05 1.16 3.88 85.56 0.33 1.49 16 14 C 0.50 19.24 7.32 87.66 0.64 19.88 16 15 O -0.57 -27.99 14.87 -3.04 -0.05 -28.04 16 16 N -0.61 -24.16 2.46 -826.16 -2.03 -26.19 16 17 C 0.10 2.78 5.93 86.38 0.51 3.29 16 18 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 19 C 0.27 14.02 5.16 85.64 0.44 14.46 16 20 C -0.54 -30.12 9.39 25.60 0.24 -29.88 16 21 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 22 C 0.01 0.37 5.46 84.66 0.46 0.83 16 23 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 24 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H 0.03 0.89 6.94 -2.39 -0.02 0.87 16 29 H 0.05 1.43 7.77 -2.38 -0.02 1.41 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.56 6.23 -2.39 -0.01 1.54 16 32 H 0.08 1.70 7.82 -2.39 -0.02 1.68 16 33 H 0.10 1.44 8.03 -2.38 -0.02 1.42 16 34 H 0.07 1.55 7.21 -2.39 -0.02 1.54 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.11 1.69 8.12 -2.39 -0.02 1.67 16 40 H 0.08 2.49 6.77 -2.39 -0.02 2.47 16 41 H 0.06 1.20 8.08 -2.39 -0.02 1.19 16 42 H 0.09 1.81 7.26 -2.39 -0.02 1.79 16 43 H 0.13 2.56 4.93 -2.39 -0.01 2.54 16 44 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 45 H 0.10 2.03 6.44 -2.39 -0.02 2.01 16 46 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 47 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 50 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 51 H 0.27 15.01 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -76.61 398.90 2.88 -73.73 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.89 Total: 16.96 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 7.09 Total: 23.73 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -7.04 Total: -114.35 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -0.09 Total: -46.08 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -76.61 2.88 -73.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495205825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.966 kcal (2) G-P(sol) polarization free energy of solvation -76.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds