Wall clock time and date at job start Fri Apr 10 2020 18:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46969 * 2 1 4 4 H 1.09007 * 109.46849 * 305.00332 * 3 2 1 5 5 C 1.52990 * 109.47120 * 185.00059 * 3 2 1 6 6 N 1.46902 * 109.47326 * 64.80411 * 5 3 2 7 7 C 1.48534 * 111.00193 * 58.23610 * 6 5 3 8 8 C 1.54937 * 103.22673 * 159.72324 * 7 6 5 9 9 C 1.54593 * 102.92410 * 322.58690 * 8 7 6 10 10 C 1.47901 * 111.00478 * 175.63654 * 6 5 3 11 11 N 1.46501 * 109.47017 * 64.99926 * 3 2 1 12 12 C 1.34780 * 119.99988 * 253.52844 * 11 3 2 13 13 O 1.21351 * 120.00116 * 0.02562 * 12 11 3 14 14 C 1.49447 * 119.99818 * 180.02562 * 12 11 3 15 15 O 1.21351 * 120.00066 * 0.02562 * 14 12 11 16 16 N 1.34775 * 120.00142 * 180.02562 * 14 12 11 17 17 C 1.46501 * 120.00118 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.46900 * 179.97438 * 17 16 14 19 19 C 1.53007 * 109.47155 * 179.97438 * 18 17 16 20 20 C 1.50694 * 109.47301 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00122 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99873 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99747 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47269 * 90.00129 * 24 22 20 26 26 H 1.48506 * 109.47024 * 210.00250 * 24 22 20 27 27 H 1.48500 * 109.47396 * 330.00015 * 24 22 20 28 28 H 1.09001 * 109.47448 * 299.99523 * 1 2 3 29 29 H 1.09000 * 109.47657 * 59.99959 * 1 2 3 30 30 H 1.09004 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46945 * 240.00326 * 2 1 3 32 32 H 1.08998 * 109.46996 * 119.99701 * 2 1 3 33 33 H 1.08997 * 109.47346 * 184.79798 * 5 3 2 34 34 H 1.08994 * 109.47455 * 304.80283 * 5 3 2 35 35 H 1.09002 * 110.66884 * 278.16430 * 7 6 5 36 36 H 1.09007 * 110.66523 * 41.29375 * 7 6 5 37 37 H 1.08999 * 110.72554 * 204.23019 * 8 7 6 38 38 H 1.09001 * 110.72315 * 80.94816 * 8 7 6 39 39 H 1.08990 * 110.31122 * 263.03984 * 9 8 7 40 40 H 1.09004 * 110.30786 * 140.86814 * 9 8 7 41 41 H 1.08998 * 109.91306 * 333.51001 * 10 6 5 42 42 H 1.09003 * 109.91726 * 94.60510 * 10 6 5 43 43 H 0.96995 * 119.99679 * 73.53316 * 11 3 2 44 44 H 0.97000 * 119.99863 * 359.97438 * 16 14 12 45 45 H 1.08996 * 109.46995 * 299.99545 * 17 16 14 46 46 H 1.08997 * 109.47351 * 59.99991 * 17 16 14 47 47 H 1.08996 * 109.47303 * 299.99187 * 18 17 16 48 48 H 1.08994 * 109.47502 * 60.00166 * 18 17 16 49 49 H 1.09004 * 109.46953 * 299.99940 * 19 18 17 50 50 H 1.09005 * 109.46776 * 59.99229 * 19 18 17 51 51 H 0.97002 * 120.00317 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5647 1.4444 -0.1257 6 7 3.9491 0.8921 -1.4315 7 6 3.3443 1.6748 -2.5396 8 6 4.2369 1.3176 -3.7545 9 6 5.6492 1.2295 -3.1318 10 6 5.4122 0.9739 -1.6319 11 7 1.6524 2.0975 1.2518 12 6 0.6656 3.0156 1.2546 13 8 0.0978 3.2993 0.2203 14 6 0.2706 3.6841 2.5315 15 8 0.8386 3.4007 3.5658 16 7 -0.7165 4.6017 2.5345 17 6 -1.1033 5.2575 3.7861 18 6 -2.2376 6.2475 3.5138 19 6 -2.6421 6.9320 4.8211 20 6 -3.7588 7.9076 4.5527 21 1 -4.1415 8.0278 3.5500 22 6 -4.2919 8.6467 5.5874 23 7 -3.8256 8.5007 6.8083 24 14 -5.6757 9.8565 5.2546 25 1 -6.9826 9.1671 5.4036 26 1 -5.5952 10.9794 6.2232 27 1 -5.5496 10.3850 3.8726 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9351 2.4660 -0.0402 34 1 3.9955 0.8341 0.6679 35 1 2.3145 1.3628 -2.7137 36 1 3.3930 2.7429 -2.3273 37 1 4.1960 2.1042 -4.5079 38 1 3.9427 0.3584 -4.1805 39 1 6.1853 2.1675 -3.2757 40 1 6.2063 0.4029 -3.5730 41 1 5.8217 1.7965 -1.0457 42 1 5.8808 0.0361 -1.3334 43 1 2.1059 1.8705 2.0786 44 1 -1.1703 4.8285 1.7077 45 1 -1.4399 4.5065 4.5008 46 1 -0.2463 5.7914 4.1966 47 1 -1.9006 6.9985 2.7993 48 1 -3.0948 5.7141 3.1031 49 1 -2.9792 6.1807 5.5353 50 1 -1.7849 7.4653 5.2322 51 1 -4.2004 9.0209 7.5362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588053107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:53 Heat of formation + Delta-G solvation = -90.482119 kcal Electronic energy + Delta-G solvation = -27395.256401 eV Core-core repulsion = 23521.626824 eV Total energy + Delta-G solvation = -3873.629577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.81938 -39.58793 -38.53760 -36.52904 -35.58441 -33.40651 -32.73804 -32.14745 -31.25631 -29.39045 -28.22246 -27.12339 -24.79487 -23.78392 -22.68297 -21.95299 -21.30397 -20.80172 -20.59480 -20.11829 -18.29622 -17.18727 -16.52683 -16.44271 -16.25703 -16.02242 -15.53927 -15.05908 -14.99284 -14.63546 -14.46655 -14.37483 -14.10348 -13.97305 -13.70700 -13.33001 -12.98533 -12.74413 -12.47058 -12.31997 -11.92238 -11.89837 -11.81224 -11.79756 -11.72133 -11.58916 -11.43381 -11.27514 -11.01537 -10.99749 -10.92106 -10.77015 -10.61217 -9.91399 -9.79478 -9.47988 -9.38505 -9.14249 -8.99489 -8.91308 -8.38800 -6.03524 -4.06548 1.40380 2.28574 3.20446 3.30502 3.36854 3.39651 3.43030 3.79899 4.10642 4.20529 4.39221 4.43344 4.47826 4.51796 4.64846 4.82139 4.84172 5.02575 5.06973 5.12588 5.21835 5.27903 5.32460 5.35072 5.39814 5.50019 5.52926 5.58045 5.60219 5.63049 5.67818 5.72583 5.77462 5.82292 6.06686 6.07644 6.12771 6.25623 6.37638 6.51607 6.52805 6.68041 6.91223 6.94024 7.39895 7.60682 7.71896 7.72258 7.94700 8.03785 8.36011 8.99894 9.57813 11.07701 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.001769 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.323461 B =15823.489960 C =16027.397908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.137 3.863 4 H 0.104 0.896 5 C 0.037 3.963 6 N -0.510 5.510 7 C 0.028 3.972 8 C -0.124 4.124 9 C -0.132 4.132 10 C 0.035 3.965 11 N -0.698 5.698 12 C 0.512 3.488 13 O -0.519 6.519 14 C 0.499 3.501 15 O -0.526 6.526 16 N -0.691 5.691 17 C 0.114 3.886 18 C -0.123 4.123 19 C 0.024 3.976 20 C -0.523 4.523 21 H 0.056 0.944 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.894 3.106 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.412 0.588 44 H 0.411 0.589 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.020 0.980 50 H 0.020 0.980 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.724 -18.737 -19.352 32.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.033 3.967 4 H 0.122 0.878 5 C -0.092 4.092 6 N -0.235 5.235 7 C -0.100 4.100 8 C -0.162 4.162 9 C -0.170 4.170 10 C -0.092 4.092 11 N -0.352 5.352 12 C 0.293 3.707 13 O -0.394 6.394 14 C 0.279 3.721 15 O -0.403 6.403 16 N -0.343 5.343 17 C -0.008 4.008 18 C -0.161 4.161 19 C -0.013 4.013 20 C -0.561 4.561 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.248 0.752 44 H 0.247 0.753 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.038 0.962 50 H 0.038 0.962 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.509 -19.185 -19.153 32.825 hybrid contribution -0.465 1.590 0.122 1.661 sum 18.044 -17.595 -19.031 31.581 Atomic orbital electron populations 1.21746 0.95522 1.01417 1.02129 1.21845 0.96143 0.95042 1.03363 1.21193 0.93672 0.94462 0.87380 0.87842 1.22574 0.95130 0.98793 0.92733 1.64756 1.06849 1.50466 1.01420 1.23336 0.99581 0.96227 0.90849 1.22478 0.94334 1.02256 0.97100 1.22397 0.97655 1.02060 0.94864 1.22871 0.88604 1.01416 0.96356 1.45714 1.36714 1.40538 1.12230 1.20333 0.80668 0.80160 0.89566 1.90750 1.52652 1.62674 1.33356 1.20024 0.81796 0.81482 0.88829 1.90761 1.53367 1.63026 1.33158 1.46074 1.35169 1.39329 1.13710 1.21846 0.99090 0.95872 0.84034 1.21928 0.95227 0.96612 1.02303 1.19036 0.96602 0.95193 0.90516 1.21200 1.18292 1.22250 0.94395 0.92568 1.25027 0.97093 0.97198 0.95133 1.69960 1.42197 1.41376 0.99728 0.86571 0.82407 0.80813 0.78062 1.20643 1.21206 1.19878 0.93161 0.92498 0.92701 0.89413 0.91751 0.93859 0.89866 0.89555 0.93441 0.90964 0.90597 0.91498 0.90898 0.93651 0.90108 0.75175 0.75321 0.91075 0.91113 0.92440 0.92419 0.96183 0.96198 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.69 37.16 0.36 -1.01 16 2 C -0.13 -0.97 5.55 -26.73 -0.15 -1.12 16 3 C 0.14 1.15 2.17 -67.93 -0.15 1.01 16 4 H 0.10 1.03 5.52 -51.93 -0.29 0.75 16 5 C 0.04 0.26 4.55 -3.83 -0.02 0.25 16 6 N -0.51 -3.51 4.72 -230.46 -1.09 -4.60 16 7 C 0.03 0.19 5.33 -1.90 -0.01 0.18 16 8 C -0.12 -0.67 7.06 -24.87 -0.18 -0.85 16 9 C -0.13 -0.67 6.93 -25.38 -0.18 -0.84 16 10 C 0.04 0.21 6.70 -2.75 -0.02 0.19 16 11 N -0.70 -6.86 4.49 -54.24 -0.24 -7.11 16 12 C 0.51 6.53 7.15 -11.59 -0.08 6.44 16 13 O -0.52 -7.44 15.86 5.50 0.09 -7.35 16 14 C 0.50 7.37 7.89 -11.59 -0.09 7.27 16 15 O -0.53 -8.83 16.48 5.50 0.09 -8.74 16 16 N -0.69 -10.30 5.55 -60.73 -0.34 -10.64 16 17 C 0.11 1.94 5.67 -4.04 -0.02 1.92 16 18 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 19 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 21 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 24 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.05 0.54 7.21 -51.93 -0.37 0.16 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.66 7.61 -51.93 -0.40 0.26 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.34 7.97 -51.93 -0.41 -0.07 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.60 7.55 -51.93 -0.39 0.21 16 36 H 0.05 0.36 8.02 -51.92 -0.42 -0.06 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.41 3.65 8.28 -40.82 -0.34 3.31 16 44 H 0.41 5.59 7.94 -40.82 -0.32 5.27 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 410.69 15.07 6.19 6.19 Total: -1.00 -31.31 410.69 -10.03 -41.34 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -9.22 Total: 2.30 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.22 Total: -1.96 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.93 Total: -48.23 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.18 Total: -16.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.31 -10.03 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588053107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.146 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds