Wall clock time and date at job start Fri Apr 10 2020 18:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46969 * 2 1 4 4 H 1.09007 * 109.46849 * 305.00332 * 3 2 1 5 5 C 1.52990 * 109.47120 * 185.00059 * 3 2 1 6 6 N 1.46902 * 109.47326 * 64.80411 * 5 3 2 7 7 C 1.48534 * 111.00193 * 58.23610 * 6 5 3 8 8 C 1.54937 * 103.22673 * 159.72324 * 7 6 5 9 9 C 1.54593 * 102.92410 * 322.58690 * 8 7 6 10 10 C 1.47901 * 111.00478 * 175.63654 * 6 5 3 11 11 N 1.46501 * 109.47017 * 64.99926 * 3 2 1 12 12 C 1.34780 * 119.99988 * 253.52844 * 11 3 2 13 13 O 1.21351 * 120.00116 * 0.02562 * 12 11 3 14 14 C 1.49447 * 119.99818 * 180.02562 * 12 11 3 15 15 O 1.21351 * 120.00066 * 0.02562 * 14 12 11 16 16 N 1.34775 * 120.00142 * 180.02562 * 14 12 11 17 17 C 1.46501 * 120.00118 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.46900 * 179.97438 * 17 16 14 19 19 C 1.53007 * 109.47155 * 179.97438 * 18 17 16 20 20 C 1.50694 * 109.47301 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00122 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99873 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99747 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47269 * 90.00129 * 24 22 20 26 26 H 1.48506 * 109.47024 * 210.00250 * 24 22 20 27 27 H 1.48500 * 109.47396 * 330.00015 * 24 22 20 28 28 H 1.09001 * 109.47448 * 299.99523 * 1 2 3 29 29 H 1.09000 * 109.47657 * 59.99959 * 1 2 3 30 30 H 1.09004 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46945 * 240.00326 * 2 1 3 32 32 H 1.08998 * 109.46996 * 119.99701 * 2 1 3 33 33 H 1.08997 * 109.47346 * 184.79798 * 5 3 2 34 34 H 1.08994 * 109.47455 * 304.80283 * 5 3 2 35 35 H 1.09002 * 110.66884 * 278.16430 * 7 6 5 36 36 H 1.09007 * 110.66523 * 41.29375 * 7 6 5 37 37 H 1.08999 * 110.72554 * 204.23019 * 8 7 6 38 38 H 1.09001 * 110.72315 * 80.94816 * 8 7 6 39 39 H 1.08990 * 110.31122 * 263.03984 * 9 8 7 40 40 H 1.09004 * 110.30786 * 140.86814 * 9 8 7 41 41 H 1.08998 * 109.91306 * 333.51001 * 10 6 5 42 42 H 1.09003 * 109.91726 * 94.60510 * 10 6 5 43 43 H 0.96995 * 119.99679 * 73.53316 * 11 3 2 44 44 H 0.97000 * 119.99863 * 359.97438 * 16 14 12 45 45 H 1.08996 * 109.46995 * 299.99545 * 17 16 14 46 46 H 1.08997 * 109.47351 * 59.99991 * 17 16 14 47 47 H 1.08996 * 109.47303 * 299.99187 * 18 17 16 48 48 H 1.08994 * 109.47502 * 60.00166 * 18 17 16 49 49 H 1.09004 * 109.46953 * 299.99940 * 19 18 17 50 50 H 1.09005 * 109.46776 * 59.99229 * 19 18 17 51 51 H 0.97002 * 120.00317 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 3.5647 1.4444 -0.1257 6 7 3.9491 0.8921 -1.4315 7 6 3.3443 1.6748 -2.5396 8 6 4.2369 1.3176 -3.7545 9 6 5.6492 1.2295 -3.1318 10 6 5.4122 0.9739 -1.6319 11 7 1.6524 2.0975 1.2518 12 6 0.6656 3.0156 1.2546 13 8 0.0978 3.2993 0.2203 14 6 0.2706 3.6841 2.5315 15 8 0.8386 3.4007 3.5658 16 7 -0.7165 4.6017 2.5345 17 6 -1.1033 5.2575 3.7861 18 6 -2.2376 6.2475 3.5138 19 6 -2.6421 6.9320 4.8211 20 6 -3.7588 7.9076 4.5527 21 1 -4.1415 8.0278 3.5500 22 6 -4.2919 8.6467 5.5874 23 7 -3.8256 8.5007 6.8083 24 14 -5.6757 9.8565 5.2546 25 1 -6.9826 9.1671 5.4036 26 1 -5.5952 10.9794 6.2232 27 1 -5.5496 10.3850 3.8726 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9351 2.4660 -0.0402 34 1 3.9955 0.8341 0.6679 35 1 2.3145 1.3628 -2.7137 36 1 3.3930 2.7429 -2.3273 37 1 4.1960 2.1042 -4.5079 38 1 3.9427 0.3584 -4.1805 39 1 6.1853 2.1675 -3.2757 40 1 6.2063 0.4029 -3.5730 41 1 5.8217 1.7965 -1.0457 42 1 5.8808 0.0361 -1.3334 43 1 2.1059 1.8705 2.0786 44 1 -1.1703 4.8285 1.7077 45 1 -1.4399 4.5065 4.5008 46 1 -0.2463 5.7914 4.1966 47 1 -1.9006 6.9985 2.7993 48 1 -3.0948 5.7141 3.1031 49 1 -2.9792 6.1807 5.5353 50 1 -1.7849 7.4653 5.2322 51 1 -4.2004 9.0209 7.5362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588053107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:51 Heat of formation + Delta-G solvation = -112.119429 kcal Electronic energy + Delta-G solvation = -27396.194665 eV Core-core repulsion = 23521.626824 eV Total energy + Delta-G solvation = -3874.567841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.86772 -40.33538 -39.51097 -37.44184 -36.97589 -35.25576 -33.56330 -33.04159 -32.75442 -29.87522 -29.20563 -28.57150 -26.15936 -24.64466 -24.06292 -22.60324 -22.38032 -21.82084 -21.34835 -21.21168 -19.43523 -18.50489 -18.11872 -17.27273 -17.19850 -16.92257 -16.56445 -16.41681 -16.15202 -16.01750 -15.47295 -15.10626 -15.01018 -14.96603 -14.46257 -14.38765 -14.27262 -13.78835 -13.62126 -13.51948 -13.25718 -13.03243 -12.89818 -12.76541 -12.55959 -12.50012 -12.41090 -12.29093 -12.14736 -12.00860 -11.93611 -11.71073 -11.68849 -11.55103 -11.42788 -11.24236 -10.72027 -10.55246 -10.36370 -10.28062 -9.45751 -8.19884 -6.30809 0.28496 1.23447 1.41865 1.42629 1.53725 2.08275 2.40829 2.52904 3.08112 3.13996 3.40287 3.52648 3.74265 3.85555 3.96312 4.06918 4.13225 4.16267 4.16897 4.34469 4.41181 4.49637 4.51278 4.54767 4.64907 4.72421 4.82710 4.85260 4.90391 4.91830 4.93300 4.97940 4.98929 5.08641 5.12544 5.13859 5.20096 5.21209 5.31399 5.33588 5.41631 5.50905 5.69903 5.83775 5.85668 5.88539 5.96946 6.22331 6.31227 6.69116 6.85973 6.89217 7.38514 8.91911 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.001769 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.323461 B =15823.489960 C =16027.397908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.140 3.860 4 H 0.089 0.911 5 C 0.043 3.957 6 N -0.513 5.513 7 C 0.025 3.975 8 C -0.121 4.121 9 C -0.130 4.130 10 C 0.033 3.967 11 N -0.683 5.683 12 C 0.518 3.482 13 O -0.536 6.536 14 C 0.500 3.500 15 O -0.547 6.547 16 N -0.686 5.686 17 C 0.127 3.873 18 C -0.106 4.106 19 C 0.024 3.976 20 C -0.543 4.543 21 H 0.064 0.936 22 C -0.001 4.001 23 N -0.932 5.932 24 Si 0.965 3.035 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.263 1.263 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.419 0.581 44 H 0.419 0.581 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.067 0.933 49 H -0.003 1.003 50 H -0.003 1.003 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.155 -19.440 -20.989 34.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.036 3.964 4 H 0.107 0.893 5 C -0.086 4.086 6 N -0.238 5.238 7 C -0.103 4.103 8 C -0.160 4.160 9 C -0.168 4.168 10 C -0.095 4.095 11 N -0.336 5.336 12 C 0.298 3.702 13 O -0.413 6.413 14 C 0.281 3.719 15 O -0.425 6.425 16 N -0.339 5.339 17 C 0.004 3.996 18 C -0.144 4.144 19 C -0.013 4.013 20 C -0.581 4.581 21 H 0.082 0.918 22 C -0.199 4.199 23 N -0.572 5.572 24 Si 0.790 3.210 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.187 1.187 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.256 0.744 44 H 0.256 0.744 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.015 0.985 50 H 0.015 0.985 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.963 -19.916 -20.818 34.491 hybrid contribution -0.550 1.754 0.634 1.944 sum 18.413 -18.162 -20.184 32.807 Atomic orbital electron populations 1.21730 0.96464 1.01727 1.00745 1.21791 0.95136 0.94434 1.04188 1.21268 0.94646 0.94535 0.85951 0.89263 1.22502 0.93882 0.98731 0.93485 1.64779 1.07593 1.50256 1.01129 1.23340 0.99755 0.95574 0.91586 1.22480 0.94247 1.02563 0.96663 1.22405 0.97485 1.02636 0.94257 1.22939 0.87849 1.01742 0.96976 1.45697 1.35417 1.39262 1.13217 1.19898 0.81308 0.80637 0.88310 1.90752 1.53575 1.63547 1.33448 1.20364 0.81156 0.81020 0.89375 1.90751 1.54000 1.63635 1.34149 1.45887 1.35456 1.39341 1.13183 1.21477 0.98004 0.95248 0.84850 1.21640 0.96365 0.97009 0.99363 1.18940 0.95193 0.94454 0.92744 1.21677 1.18910 1.22688 0.94820 0.91788 1.25980 0.99825 0.99242 0.94879 1.70094 1.43810 1.42587 1.00752 0.85441 0.79017 0.78210 0.78327 1.19856 1.20931 1.18681 0.94935 0.93418 0.91577 0.88631 0.90739 0.94606 0.88607 0.89984 0.94521 0.90381 0.90348 0.91223 0.89927 0.93816 0.89408 0.74379 0.74368 0.91725 0.91731 0.91482 0.91470 0.98504 0.98507 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.69 71.98 0.70 -1.86 16 2 C -0.12 -1.63 5.55 30.60 0.17 -1.46 16 3 C 0.14 2.20 2.17 44.99 0.10 2.29 16 4 H 0.09 1.73 5.52 -2.38 -0.01 1.72 16 5 C 0.04 0.55 4.55 86.30 0.39 0.95 16 6 N -0.51 -6.31 4.72 -883.03 -4.16 -10.47 16 7 C 0.03 0.32 5.33 86.65 0.46 0.78 16 8 C -0.12 -1.16 7.06 31.80 0.22 -0.93 16 9 C -0.13 -1.10 6.93 31.47 0.22 -0.88 16 10 C 0.03 0.33 6.70 86.45 0.58 0.91 16 11 N -0.68 -12.76 4.49 -443.86 -1.99 -14.75 16 12 C 0.52 12.88 7.15 87.27 0.62 13.50 16 13 O -0.54 -15.08 15.86 -3.25 -0.05 -15.13 16 14 C 0.50 14.50 7.89 87.27 0.69 15.19 16 15 O -0.55 -18.14 16.48 -3.25 -0.05 -18.19 16 16 N -0.69 -20.03 5.55 -464.42 -2.58 -22.61 16 17 C 0.13 4.35 5.67 86.38 0.49 4.84 16 18 C -0.11 -4.07 5.27 30.60 0.16 -3.91 16 19 C 0.02 1.25 4.97 29.85 0.15 1.40 16 20 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 21 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 22 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 23 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 24 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 28 H 0.03 0.67 7.21 -2.39 -0.02 0.65 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.10 1.24 7.61 -2.39 -0.02 1.22 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.04 0.52 7.97 -2.39 -0.02 0.51 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.10 7.55 -2.39 -0.02 1.08 16 36 H 0.04 0.54 8.02 -2.38 -0.02 0.52 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 40 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.04 0.46 7.66 -2.39 -0.02 0.44 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.42 6.89 8.28 -92.71 -0.77 6.12 16 44 H 0.42 10.99 7.94 -92.71 -0.74 10.25 16 45 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 50 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 51 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -66.75 410.69 -1.47 -68.22 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.59 Total: 22.03 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 5.65 Total: 1.13 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -8.45 Total: -103.97 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.11 Total: -33.32 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.75 -1.47 -68.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588053107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.900 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds