Wall clock time and date at job start Fri Apr 10 2020 18:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46901 * 109.46860 * 240.00524 * 2 1 3 5 5 C 1.46842 * 111.00436 * 55.78814 * 4 2 1 6 6 C 1.53039 * 109.52811 * 185.84000 * 5 4 2 7 7 C 1.53122 * 109.27645 * 300.82551 * 6 5 4 8 8 N 1.46499 * 109.57329 * 177.58760 * 7 6 5 9 9 C 1.34780 * 119.99554 * 85.28244 * 8 7 6 10 10 O 1.21586 * 120.00566 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99598 * 180.02562 * 9 8 7 12 12 C 1.47018 * 125.64702 * 359.68912 * 11 9 8 13 13 C 1.54337 * 107.26691 * 178.85239 * 12 11 9 14 14 C 1.55158 * 103.01841 * 338.14376 * 13 12 11 15 15 O 1.42903 * 111.00600 * 277.23496 * 14 13 12 16 16 C 1.50699 * 111.04093 * 153.39236 * 14 13 12 17 17 H 1.07999 * 119.99333 * 6.33501 * 16 14 13 18 18 C 1.37875 * 120.00088 * 186.32626 * 16 14 13 19 19 N 1.31515 * 120.00071 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99666 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47385 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46589 * 120.00581 * 20 18 16 23 23 H 1.48497 * 109.47398 * 240.00338 * 20 18 16 24 24 C 1.47421 * 125.64863 * 180.02562 * 11 9 8 25 25 C 1.53120 * 109.16099 * 57.64978 * 7 6 5 26 26 C 1.46845 * 110.99925 * 180.02562 * 4 2 1 27 27 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.08997 * 109.46330 * 305.86164 * 5 4 2 35 35 H 1.09007 * 109.46087 * 65.82320 * 5 4 2 36 36 H 1.08996 * 109.50285 * 180.88345 * 6 5 4 37 37 H 1.09001 * 109.53227 * 60.78114 * 6 5 4 38 38 H 1.09004 * 109.51792 * 297.74509 * 7 6 5 39 39 H 0.96997 * 120.00351 * 265.28236 * 8 7 6 40 40 H 1.09002 * 109.88620 * 298.39614 * 12 11 9 41 41 H 1.09002 * 109.88476 * 59.56548 * 12 11 9 42 42 H 1.08995 * 110.85446 * 219.67857 * 13 12 11 43 43 H 1.09002 * 110.51906 * 96.44917 * 13 12 11 44 44 H 0.96699 * 114.00580 * 173.65224 * 15 14 13 45 45 H 0.97004 * 119.99846 * 179.97438 * 19 18 16 46 46 H 1.09005 * 110.36518 * 322.92375 * 24 11 9 47 47 H 1.08994 * 110.37100 * 85.13389 * 24 11 9 48 48 H 1.08999 * 109.49638 * 182.40475 * 25 7 6 49 49 H 1.08995 * 109.50437 * 62.28961 * 25 7 6 50 50 H 1.09000 * 109.46446 * 294.17421 * 26 4 2 51 51 H 1.09007 * 109.46415 * 54.15738 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.4684 -0.0871 -2.4185 6 6 1.8810 -0.9194 -3.6347 7 6 3.4091 -0.9735 -3.7153 8 7 3.8115 -1.8164 -4.8439 9 6 3.9005 -1.2887 -6.0809 10 8 3.6473 -0.1131 -6.2601 11 7 4.2702 -2.0643 -7.1194 12 6 4.6095 -3.4927 -7.0438 13 6 4.9405 -3.9614 -8.4765 14 6 4.2290 -2.9052 -9.3629 15 8 2.8453 -3.2223 -9.5268 16 6 4.9118 -2.7724 -10.6998 17 1 5.7140 -3.4449 -10.9655 18 6 4.5123 -1.7925 -11.5836 19 7 3.5357 -0.9733 -11.2597 20 14 5.3592 -1.6274 -13.2404 21 1 6.4181 -2.6617 -13.3603 22 1 4.3628 -1.8115 -14.3260 23 1 5.9696 -0.2783 -13.3522 24 6 4.4080 -1.6190 -8.5180 25 6 3.9605 -1.5631 -2.4142 26 6 3.4875 -0.7125 -1.2332 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 0.3809 -0.0585 -2.3500 35 1 1.8521 0.9275 -2.5257 36 1 1.4847 -0.4611 -4.5407 37 1 1.4858 -1.9304 -3.5354 38 1 3.8023 0.0335 -3.8543 39 1 4.0139 -2.7542 -4.7010 40 1 5.4748 -3.6345 -6.3962 41 1 3.7594 -4.0559 -6.6587 42 1 4.5360 -4.9563 -8.6625 43 1 6.0173 -3.9440 -8.6451 44 1 2.3382 -2.5422 -9.9909 45 1 3.2549 -0.2836 -11.8814 46 1 3.6326 -0.8932 -8.7632 47 1 5.3956 -1.1885 -8.6835 48 1 5.0499 -1.5647 -2.4484 49 1 3.5981 -2.5842 -2.2950 50 1 3.8623 0.3048 -1.3457 51 1 3.8664 -1.1385 -0.3040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591895120.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:40 Heat of formation + Delta-G solvation = -77.636235 kcal Electronic energy + Delta-G solvation = -29084.026310 eV Core-core repulsion = 25210.953773 eV Total energy + Delta-G solvation = -3873.072537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.13370 -39.22101 -37.42172 -35.65747 -34.18584 -32.82480 -32.20256 -31.09536 -30.26228 -29.17303 -27.67843 -27.52129 -25.21356 -23.91616 -23.30653 -22.36356 -20.84127 -19.65968 -19.61992 -19.14834 -17.50491 -16.98182 -16.58989 -15.78144 -15.35664 -15.07354 -15.00577 -14.77242 -14.51581 -14.36542 -13.95358 -13.89614 -13.69773 -13.20563 -13.01354 -12.83912 -12.79124 -12.46372 -12.26738 -12.01905 -11.94270 -11.63112 -11.61437 -11.52974 -11.39253 -11.19582 -11.04060 -10.98291 -10.79756 -10.64368 -10.57075 -10.47547 -10.44220 -10.15921 -9.54719 -9.33325 -8.74724 -8.67366 -8.46388 -8.31904 -7.64374 -6.25032 -4.34717 3.15938 3.22620 3.30330 3.33591 3.66010 3.79835 4.27645 4.47216 4.55425 4.64556 4.75854 4.84915 4.99379 5.01316 5.02430 5.16486 5.17408 5.31153 5.38538 5.43887 5.45995 5.50787 5.52928 5.56830 5.66268 5.68249 5.68501 5.79154 5.84150 5.92675 5.96720 6.01838 6.04560 6.08983 6.20674 6.33890 6.54197 6.73694 6.86648 6.91842 6.92234 6.93130 7.02389 7.27185 7.36516 7.71081 7.77203 8.06656 8.59473 8.70399 9.20006 9.32990 9.41122 10.81922 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.002463 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.550730 B =11364.211484 C =11662.423614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.189 4.189 4 N -0.532 5.532 5 C 0.053 3.947 6 C -0.127 4.127 7 C 0.166 3.834 8 N -0.747 5.747 9 C 0.716 3.284 10 O -0.598 6.598 11 N -0.629 5.629 12 C 0.106 3.894 13 C -0.116 4.116 14 C 0.248 3.752 15 O -0.583 6.583 16 C -0.537 4.537 17 H 0.067 0.933 18 C 0.070 3.930 19 N -0.891 5.891 20 Si 0.903 3.097 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.114 3.886 25 C -0.123 4.123 26 C 0.059 3.941 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.392 0.608 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.381 0.619 45 H 0.269 0.731 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.039 0.961 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 -0.461 21.547 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 C -0.248 4.248 4 N -0.257 5.257 5 C -0.075 4.075 6 C -0.167 4.167 7 C 0.060 3.940 8 N -0.402 5.402 9 C 0.418 3.582 10 O -0.477 6.477 11 N -0.365 5.365 12 C -0.018 4.018 13 C -0.154 4.154 14 C 0.207 3.793 15 O -0.391 6.391 16 C -0.575 4.575 17 H 0.085 0.915 18 C -0.133 4.133 19 N -0.530 5.530 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.008 4.008 25 C -0.161 4.161 26 C -0.069 4.069 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.226 0.774 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.231 0.769 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.057 0.943 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.096 -0.413 21.716 21.821 hybrid contribution 0.670 1.108 -1.153 1.734 sum -1.426 0.695 20.563 20.624 Atomic orbital electron populations 1.21921 0.94344 1.02526 1.01783 1.21687 0.95755 0.92323 0.93432 1.22507 1.01621 0.98249 1.02445 1.62223 1.07777 1.53643 1.02025 1.22153 1.00210 0.96093 0.89062 1.22019 0.96110 1.01120 0.97417 1.20720 0.94033 0.95137 0.84099 1.45187 1.75345 1.13252 1.06461 1.15542 0.78311 0.84539 0.79766 1.90873 1.58093 1.14990 1.83743 1.47938 1.69971 1.09816 1.08817 1.21915 0.98295 0.82393 0.99177 1.22588 1.00555 1.00047 0.92192 1.19641 0.80435 0.87583 0.91612 1.86100 1.22209 1.49856 1.80942 1.21490 1.19309 1.16434 1.00277 0.91520 1.25087 0.94648 0.94712 0.98846 1.69736 1.27751 1.18854 1.36637 0.86363 0.79462 0.78034 0.83105 1.19611 1.20781 1.20809 1.23113 1.01415 1.00517 0.75753 1.21863 1.00501 1.00496 0.93277 1.22013 0.87701 0.98738 0.98483 0.92354 0.92277 0.91761 0.90050 0.92170 0.92381 0.92233 0.90116 0.94450 0.90703 0.91116 0.90051 0.77447 0.93216 0.92705 0.90814 0.90488 0.76945 0.92090 0.89702 0.92608 0.90954 0.90601 0.94296 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 2 C 0.08 0.60 3.03 -67.71 -0.20 0.39 16 3 C -0.19 -1.43 8.51 37.16 0.32 -1.11 16 4 N -0.53 -5.02 4.68 -226.69 -1.06 -6.08 16 5 C 0.05 0.57 4.67 -3.84 -0.02 0.55 16 6 C -0.13 -1.65 5.68 -26.65 -0.15 -1.80 16 7 C 0.17 2.20 2.52 -67.81 -0.17 2.03 16 8 N -0.75 -11.42 5.04 -58.55 -0.30 -11.72 16 9 C 0.72 14.72 8.46 -86.91 -0.74 13.99 16 10 O -0.60 -14.59 16.26 5.29 0.09 -14.51 16 11 N -0.63 -13.16 3.33 -176.22 -0.59 -13.75 16 12 C 0.11 1.85 6.15 -3.06 -0.02 1.83 16 13 C -0.12 -2.29 6.13 -24.89 -0.15 -2.44 16 14 C 0.25 6.01 0.87 -89.61 -0.08 5.93 16 15 O -0.58 -14.90 13.16 -35.23 -0.46 -15.36 16 16 C -0.54 -13.98 8.27 -34.44 -0.28 -14.26 16 17 H 0.07 1.70 7.79 -52.49 -0.41 1.30 16 18 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 19 N -0.89 -23.97 10.69 55.43 0.59 -23.38 16 20 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.11 2.79 5.38 -2.52 -0.01 2.77 16 25 C -0.12 -1.21 5.57 -26.65 -0.15 -1.36 16 26 C 0.06 0.53 4.89 -3.84 -0.02 0.51 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.45 6.22 -51.93 -0.32 0.13 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 33 H 0.06 0.50 6.63 -51.93 -0.34 0.16 16 34 H 0.08 0.81 5.90 -51.93 -0.31 0.50 16 35 H 0.04 0.42 6.71 -51.92 -0.35 0.07 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.27 7.58 -51.93 -0.39 0.87 16 39 H 0.39 5.09 7.59 -40.82 -0.31 4.78 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 44 H 0.38 10.04 7.56 45.56 0.34 10.38 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 46 H 0.08 2.35 7.33 -51.93 -0.38 1.97 16 47 H 0.06 1.41 8.03 -51.93 -0.42 1.00 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.04 0.36 6.63 -51.93 -0.34 0.02 16 51 H 0.08 0.59 8.12 -51.92 -0.42 0.16 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -29.88 386.80 -10.56 -40.44 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -8.19 Total: 15.07 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.45 Total: 8.03 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -1.35 Total: -54.92 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.38 Total: -29.87 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.88 -10.56 -40.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591895120.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.193 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds