Wall clock time and date at job start Fri Apr 10 2020 18:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46901 * 109.46860 * 240.00524 * 2 1 3 5 5 C 1.46842 * 111.00436 * 55.78814 * 4 2 1 6 6 C 1.53039 * 109.52811 * 185.84000 * 5 4 2 7 7 C 1.53122 * 109.27645 * 300.82551 * 6 5 4 8 8 N 1.46499 * 109.57329 * 177.58760 * 7 6 5 9 9 C 1.34780 * 119.99554 * 85.28244 * 8 7 6 10 10 O 1.21586 * 120.00566 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99598 * 180.02562 * 9 8 7 12 12 C 1.47018 * 125.64702 * 359.68912 * 11 9 8 13 13 C 1.54337 * 107.26691 * 178.85239 * 12 11 9 14 14 C 1.55158 * 103.01841 * 338.14376 * 13 12 11 15 15 O 1.42903 * 111.00600 * 277.23496 * 14 13 12 16 16 C 1.50699 * 111.04093 * 153.39236 * 14 13 12 17 17 H 1.07999 * 119.99333 * 6.33501 * 16 14 13 18 18 C 1.37875 * 120.00088 * 186.32626 * 16 14 13 19 19 N 1.31515 * 120.00071 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99666 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47385 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46589 * 120.00581 * 20 18 16 23 23 H 1.48497 * 109.47398 * 240.00338 * 20 18 16 24 24 C 1.47421 * 125.64863 * 180.02562 * 11 9 8 25 25 C 1.53120 * 109.16099 * 57.64978 * 7 6 5 26 26 C 1.46845 * 110.99925 * 180.02562 * 4 2 1 27 27 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 28 28 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.08997 * 109.46330 * 305.86164 * 5 4 2 35 35 H 1.09007 * 109.46087 * 65.82320 * 5 4 2 36 36 H 1.08996 * 109.50285 * 180.88345 * 6 5 4 37 37 H 1.09001 * 109.53227 * 60.78114 * 6 5 4 38 38 H 1.09004 * 109.51792 * 297.74509 * 7 6 5 39 39 H 0.96997 * 120.00351 * 265.28236 * 8 7 6 40 40 H 1.09002 * 109.88620 * 298.39614 * 12 11 9 41 41 H 1.09002 * 109.88476 * 59.56548 * 12 11 9 42 42 H 1.08995 * 110.85446 * 219.67857 * 13 12 11 43 43 H 1.09002 * 110.51906 * 96.44917 * 13 12 11 44 44 H 0.96699 * 114.00580 * 173.65224 * 15 14 13 45 45 H 0.97004 * 119.99846 * 179.97438 * 19 18 16 46 46 H 1.09005 * 110.36518 * 322.92375 * 24 11 9 47 47 H 1.08994 * 110.37100 * 85.13389 * 24 11 9 48 48 H 1.08999 * 109.49638 * 182.40475 * 25 7 6 49 49 H 1.08995 * 109.50437 * 62.28961 * 25 7 6 50 50 H 1.09000 * 109.46446 * 294.17421 * 26 4 2 51 51 H 1.09007 * 109.46415 * 54.15738 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.4684 -0.0871 -2.4185 6 6 1.8810 -0.9194 -3.6347 7 6 3.4091 -0.9735 -3.7153 8 7 3.8115 -1.8164 -4.8439 9 6 3.9005 -1.2887 -6.0809 10 8 3.6473 -0.1131 -6.2601 11 7 4.2702 -2.0643 -7.1194 12 6 4.6095 -3.4927 -7.0438 13 6 4.9405 -3.9614 -8.4765 14 6 4.2290 -2.9052 -9.3629 15 8 2.8453 -3.2223 -9.5268 16 6 4.9118 -2.7724 -10.6998 17 1 5.7140 -3.4449 -10.9655 18 6 4.5123 -1.7925 -11.5836 19 7 3.5357 -0.9733 -11.2597 20 14 5.3592 -1.6274 -13.2404 21 1 6.4181 -2.6617 -13.3603 22 1 4.3628 -1.8115 -14.3260 23 1 5.9696 -0.2783 -13.3522 24 6 4.4080 -1.6190 -8.5180 25 6 3.9605 -1.5631 -2.4142 26 6 3.4875 -0.7125 -1.2332 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 0.3809 -0.0585 -2.3500 35 1 1.8521 0.9275 -2.5257 36 1 1.4847 -0.4611 -4.5407 37 1 1.4858 -1.9304 -3.5354 38 1 3.8023 0.0335 -3.8543 39 1 4.0139 -2.7542 -4.7010 40 1 5.4748 -3.6345 -6.3962 41 1 3.7594 -4.0559 -6.6587 42 1 4.5360 -4.9563 -8.6625 43 1 6.0173 -3.9440 -8.6451 44 1 2.3382 -2.5422 -9.9909 45 1 3.2549 -0.2836 -11.8814 46 1 3.6326 -0.8932 -8.7632 47 1 5.3956 -1.1885 -8.6835 48 1 5.0499 -1.5647 -2.4484 49 1 3.5981 -2.5842 -2.2950 50 1 3.8623 0.3048 -1.3457 51 1 3.8664 -1.1385 -0.3040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591895120.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:39 Heat of formation + Delta-G solvation = -99.929059 kcal Electronic energy + Delta-G solvation = -29084.993000 eV Core-core repulsion = 25210.953773 eV Total energy + Delta-G solvation = -3874.039227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44696 -40.38783 -39.06110 -36.80837 -36.02561 -34.22701 -33.95743 -32.00954 -31.74805 -30.29374 -29.43203 -28.11704 -27.00774 -25.08056 -24.30831 -23.74797 -21.75770 -21.43125 -20.96450 -20.20177 -19.20889 -18.73946 -17.65299 -17.08760 -16.80456 -16.77078 -16.24811 -16.01503 -15.74633 -15.56338 -15.10580 -14.89490 -14.80659 -14.72876 -14.57175 -14.32069 -13.76914 -13.62003 -13.51346 -13.31147 -13.21941 -12.96609 -12.86127 -12.68033 -12.52193 -12.38890 -12.33907 -12.28700 -12.19540 -12.07887 -11.94680 -11.79792 -11.54260 -11.40066 -11.25379 -11.16426 -10.66852 -10.31048 -10.12637 -9.31607 -9.21688 -8.23929 -6.41219 1.40694 1.43977 1.54986 1.69511 2.17528 2.38514 2.91998 3.02046 3.09718 3.71394 3.80813 3.82463 4.01128 4.04374 4.10073 4.19837 4.21262 4.28908 4.34974 4.37137 4.37828 4.50397 4.60163 4.64746 4.66232 4.75185 4.77758 4.80269 4.89113 4.91755 5.00356 5.04111 5.07990 5.11082 5.14421 5.16290 5.23436 5.32463 5.35344 5.40036 5.41614 5.47754 5.60765 5.76707 6.06404 6.13354 6.19857 6.23485 6.66656 7.09758 7.28117 7.35482 7.60728 8.81301 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.002463 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.550730 B =11364.211484 C =11662.423614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.186 4.186 4 N -0.534 5.534 5 C 0.061 3.939 6 C -0.122 4.122 7 C 0.163 3.837 8 N -0.724 5.724 9 C 0.710 3.290 10 O -0.646 6.646 11 N -0.634 5.634 12 C 0.108 3.892 13 C -0.110 4.110 14 C 0.232 3.768 15 O -0.587 6.587 16 C -0.553 4.553 17 H 0.070 0.930 18 C 0.024 3.976 19 N -0.916 5.916 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.284 1.284 24 C 0.129 3.871 25 C -0.111 4.111 26 C 0.059 3.941 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.408 0.592 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.372 0.628 45 H 0.268 0.732 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.034 0.966 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 -2.339 23.832 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.245 4.245 4 N -0.258 5.258 5 C -0.067 4.067 6 C -0.161 4.161 7 C 0.058 3.942 8 N -0.380 5.380 9 C 0.412 3.588 10 O -0.529 6.529 11 N -0.371 5.371 12 C -0.014 4.014 13 C -0.148 4.148 14 C 0.191 3.809 15 O -0.394 6.394 16 C -0.592 4.592 17 H 0.088 0.912 18 C -0.177 4.177 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.210 1.210 24 C 0.005 3.995 25 C -0.149 4.149 26 C -0.070 4.070 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.245 0.755 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.220 0.780 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.103 0.897 49 H 0.107 0.893 50 H 0.052 0.948 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.074 -2.356 24.060 24.199 hybrid contribution 0.328 1.714 -1.823 2.523 sum -0.746 -0.642 22.237 22.259 Atomic orbital electron populations 1.21908 0.93972 1.02428 1.02084 1.21784 0.96088 0.92384 0.92982 1.22472 1.01529 0.98121 1.02363 1.62244 1.08144 1.53653 1.01808 1.22005 1.00621 0.95088 0.88990 1.21914 0.95780 1.01388 0.97004 1.20891 0.94291 0.93966 0.85017 1.45027 1.73870 1.14166 1.04941 1.15781 0.78088 0.83949 0.80985 1.90837 1.60019 1.17306 1.84692 1.47880 1.70297 1.11367 1.07534 1.22114 1.00682 0.80018 0.98633 1.22595 1.00730 0.99175 0.92308 1.19883 0.79887 0.89226 0.91887 1.86091 1.23043 1.49533 1.80777 1.21827 1.19534 1.16487 1.01329 0.91206 1.25859 0.95240 0.94484 1.02124 1.69866 1.28871 1.19234 1.37539 0.85404 0.78584 0.77901 0.79110 1.18613 1.20630 1.20966 1.22636 0.98678 0.99843 0.78341 1.21812 1.01111 1.00922 0.91083 1.22080 0.87368 0.98504 0.99007 0.90923 0.93160 0.92014 0.88627 0.90885 0.92453 0.93678 0.89514 0.95496 0.94339 0.90552 0.92786 0.75526 0.89101 0.90954 0.89594 0.89273 0.77966 0.92273 0.94014 0.94441 0.89736 0.89305 0.94825 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.84 71.98 0.64 -1.22 16 2 C 0.08 1.01 3.03 44.92 0.14 1.15 16 3 C -0.19 -2.51 8.51 71.98 0.61 -1.89 16 4 N -0.53 -9.05 4.68 -871.12 -4.08 -13.12 16 5 C 0.06 1.30 4.67 86.33 0.40 1.70 16 6 C -0.12 -3.18 5.68 30.65 0.17 -3.00 16 7 C 0.16 4.26 2.52 45.07 0.11 4.38 16 8 N -0.72 -21.42 5.04 -457.41 -2.31 -23.73 16 9 C 0.71 29.58 8.46 179.05 1.51 31.09 16 10 O -0.65 -33.10 16.26 -3.99 -0.06 -33.17 16 11 N -0.63 -26.53 3.33 -829.70 -2.76 -29.29 16 12 C 0.11 3.48 6.15 86.73 0.53 4.01 16 13 C -0.11 -4.14 6.13 31.79 0.19 -3.95 16 14 C 0.23 11.30 0.87 -10.14 -0.01 11.29 16 15 O -0.59 -30.54 13.16 -148.98 -1.96 -32.50 16 16 C -0.55 -28.99 8.27 25.60 0.21 -28.78 16 17 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 18 C 0.02 1.26 5.29 84.65 0.45 1.70 16 19 N -0.92 -50.99 10.69 21.45 0.23 -50.76 16 20 Si 0.96 42.26 29.54 68.60 2.03 44.29 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 C 0.13 6.51 5.38 86.86 0.47 6.98 16 25 C -0.11 -1.90 5.57 30.64 0.17 -1.73 16 26 C 0.06 0.90 4.89 86.32 0.42 1.33 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.72 6.22 -2.39 -0.01 0.71 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.78 6.54 -2.39 -0.02 0.76 16 33 H 0.04 0.74 6.63 -2.39 -0.02 0.72 16 34 H 0.09 1.72 5.90 -2.39 -0.01 1.71 16 35 H 0.03 0.62 6.71 -2.38 -0.02 0.61 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.73 7.58 -2.38 -0.02 1.71 16 39 H 0.41 9.46 7.59 -92.71 -0.70 8.76 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 43 H 0.09 3.11 8.03 -2.39 -0.02 3.09 16 44 H 0.37 20.44 7.56 -74.06 -0.56 19.88 16 45 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 46 H 0.04 2.44 7.33 -2.38 -0.02 2.42 16 47 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16 48 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.03 0.57 6.63 -2.39 -0.02 0.55 16 51 H 0.10 1.14 8.12 -2.38 -0.02 1.12 16 Total: -1.00 -67.99 386.80 -3.22 -71.21 By element: Atomic # 1 Polarization: 44.34 SS G_CDS: -0.34 Total: 44.01 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 6.03 Total: 23.07 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -8.91 Total: -116.91 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -2.03 Total: -65.67 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -67.99 -3.22 -71.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591895120.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.716 kcal (2) G-P(sol) polarization free energy of solvation -67.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds