Wall clock time and date at job start Fri Apr 10 2020 18:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.50490 * 2 1 4 4 C 1.53120 * 109.53669 * 120.09787 * 2 1 3 5 5 C 1.53123 * 109.16070 * 177.61204 * 4 2 1 6 6 C 1.53034 * 109.28182 * 302.35293 * 5 4 2 7 7 N 1.46839 * 109.52552 * 59.17780 * 6 5 4 8 8 C 1.46901 * 111.00222 * 174.16216 * 7 6 5 9 9 C 1.53000 * 109.46769 * 294.21135 * 8 7 6 10 10 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 8 12 12 O 1.21585 * 120.00319 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.47014 * 125.65071 * 0.02562 * 13 11 10 15 15 C 1.54327 * 107.27226 * 181.02094 * 14 13 11 16 16 C 1.55158 * 102.94081 * 22.19548 * 15 14 13 17 17 O 1.42895 * 111.00494 * 82.60679 * 16 15 14 18 18 C 1.50692 * 111.00297 * 206.42259 * 16 15 14 19 19 H 1.07998 * 120.00003 * 359.97438 * 18 16 15 20 20 C 1.37877 * 120.00014 * 179.97438 * 18 16 15 21 21 N 1.31511 * 120.00154 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00279 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46891 * 89.99810 * 22 20 18 24 24 H 1.48496 * 109.47196 * 210.00257 * 22 20 18 25 25 H 1.48507 * 109.47012 * 330.00212 * 22 20 18 26 26 C 1.47422 * 125.64435 * 179.71752 * 13 11 10 27 27 C 1.46849 * 111.20047 * 298.25821 * 7 6 5 28 28 H 1.09001 * 109.47038 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46869 * 300.07643 * 1 2 3 30 30 H 1.09001 * 109.46813 * 60.07910 * 1 2 3 31 31 H 1.08993 * 109.52612 * 297.52565 * 4 2 1 32 32 H 1.08999 * 109.51658 * 57.65157 * 4 2 1 33 33 H 1.09006 * 109.49682 * 62.29343 * 5 4 2 34 34 H 1.09002 * 109.50070 * 182.36831 * 5 4 2 35 35 H 1.09006 * 109.45860 * 299.16276 * 6 5 4 36 36 H 1.09002 * 109.46096 * 179.19442 * 6 5 4 37 37 H 1.09002 * 109.47401 * 174.20842 * 8 7 6 38 38 H 1.09001 * 109.46874 * 54.20855 * 8 7 6 39 39 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 40 40 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 41 41 H 0.97005 * 120.00448 * 359.97438 * 10 9 8 42 42 H 1.09000 * 109.88264 * 300.44368 * 14 13 11 43 43 H 1.09008 * 109.88311 * 61.44896 * 14 13 11 44 44 H 1.09003 * 110.71695 * 140.55779 * 15 14 13 45 45 H 1.08993 * 110.72220 * 263.65076 * 15 14 13 46 46 H 0.96700 * 114.00328 * 179.97438 * 17 16 15 47 47 H 0.96997 * 120.00732 * 179.97438 * 21 20 18 48 48 H 1.09011 * 110.36689 * 274.74355 * 26 13 11 49 49 H 1.09000 * 110.36795 * 37.06709 * 26 13 11 50 50 H 1.08991 * 109.46839 * 181.75791 * 27 7 6 51 51 H 1.09001 * 109.46094 * 301.73336 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 1.2485 5 6 3.5720 -0.7710 1.2099 6 6 4.0238 -1.4715 -0.0735 7 7 3.5093 -0.7407 -1.2386 8 6 4.0372 -1.3039 -2.4885 9 6 5.5495 -1.0800 -2.5500 10 7 6.0759 -1.6411 -3.7967 11 6 7.3933 -1.5595 -4.0691 12 8 8.1449 -1.0198 -3.2803 13 7 7.8776 -2.0762 -5.2158 14 6 7.0849 -2.7522 -6.2532 15 6 8.0632 -3.1951 -7.3615 16 6 9.4264 -3.2449 -6.6222 17 8 9.5825 -4.4785 -5.9182 18 6 10.5686 -3.0246 -7.5801 19 1 10.3699 -2.8615 -8.6291 20 6 11.8674 -3.0314 -7.1174 21 7 12.1095 -3.2305 -5.8402 22 14 13.2835 -2.7591 -8.3049 23 1 13.5846 -1.3075 -8.3916 24 1 14.4839 -3.4855 -7.8188 25 1 12.9075 -3.2677 -9.6486 26 6 9.2891 -2.0515 -5.6406 27 6 2.0410 -0.7229 -1.2484 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5150 0.8893 30 1 -0.3633 0.5126 -0.8907 31 1 1.7164 -0.1873 2.1397 32 1 1.6457 -1.7388 1.2692 33 1 3.9680 0.2444 1.2290 34 1 3.9410 -1.3218 2.0751 35 1 3.6388 -2.4912 -0.0854 36 1 5.1129 -1.4941 -0.1108 37 1 3.5623 -0.8125 -3.3376 38 1 3.8265 -2.3728 -2.5228 39 1 5.7602 -0.0111 -2.5157 40 1 6.0244 -1.5714 -1.7009 41 1 5.4762 -2.0714 -4.4262 42 1 6.5857 -3.6235 -5.8293 43 1 6.3451 -2.0637 -6.6618 44 1 7.7944 -4.1807 -7.7418 45 1 8.0863 -2.4646 -8.1701 46 1 10.4200 -4.5558 -5.4410 47 1 13.0232 -3.2357 -5.5147 48 1 9.5167 -1.1131 -6.1464 49 1 9.9462 -2.1897 -4.7819 50 1 1.6900 -0.2018 -2.1390 51 1 1.6654 -1.7461 -1.2547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591913335.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:51 Heat of formation + Delta-G solvation = -85.758840 kcal Electronic energy + Delta-G solvation = -28273.163821 eV Core-core repulsion = 24399.739061 eV Total energy + Delta-G solvation = -3873.424760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.80902 -39.34336 -37.39581 -35.56113 -34.22245 -33.61466 -32.19957 -32.12886 -30.24327 -28.68893 -27.67275 -26.83726 -25.16579 -24.01759 -22.82486 -22.41944 -21.11285 -19.97642 -19.62926 -19.42210 -17.54334 -17.04731 -16.37647 -15.79950 -15.66547 -15.15361 -14.96900 -14.82052 -14.61330 -14.49016 -14.31214 -13.93292 -13.81578 -13.20839 -13.06452 -12.94137 -12.83217 -12.70332 -12.42204 -12.11923 -12.03940 -11.80094 -11.59981 -11.49329 -11.34341 -11.30458 -11.03180 -10.91321 -10.77119 -10.57680 -10.57281 -10.54400 -10.48406 -10.16272 -9.60416 -9.37428 -8.78015 -8.66623 -8.60804 -8.34469 -7.64501 -6.27240 -4.36844 3.00984 3.21906 3.29305 3.31863 3.72434 3.79442 4.26779 4.37508 4.49713 4.52014 4.58308 4.73780 4.90432 4.96630 4.99829 5.07072 5.13563 5.21735 5.27675 5.31340 5.36923 5.43264 5.44881 5.46770 5.62876 5.66216 5.72038 5.76475 5.79411 5.83559 5.91253 5.94010 5.97388 6.04893 6.12062 6.15749 6.52932 6.70081 6.72869 6.81356 6.87404 6.89771 6.99275 7.25538 7.34967 7.66176 7.76419 8.02515 8.56516 8.67567 9.17283 9.32906 9.48406 10.80004 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.033265 B = 0.002086 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.531166 B =13416.557668 C =13797.951119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.049 3.951 7 N -0.534 5.534 8 C 0.047 3.953 9 C 0.144 3.856 10 N -0.752 5.752 11 C 0.717 3.283 12 O -0.596 6.596 13 N -0.628 5.628 14 C 0.106 3.894 15 C -0.116 4.116 16 C 0.249 3.751 17 O -0.584 6.584 18 C -0.538 4.538 19 H 0.067 0.933 20 C 0.070 3.930 21 N -0.894 5.894 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.112 3.888 27 C 0.063 3.937 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.391 0.609 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.386 0.614 47 H 0.271 0.729 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.574 3.636 9.390 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.079 4.079 7 N -0.259 5.259 8 C -0.082 4.082 9 C 0.019 3.981 10 N -0.410 5.410 11 C 0.419 3.581 12 O -0.475 6.475 13 N -0.364 5.364 14 C -0.017 4.017 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.576 4.576 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.533 5.533 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.010 4.010 27 C -0.065 4.065 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.225 0.775 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.238 0.762 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.093 0.907 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -21.301 4.420 9.970 23.930 hybrid contribution 0.730 -0.770 -0.702 1.272 sum -20.571 3.650 9.268 22.856 Atomic orbital electron populations 1.21796 0.94991 1.01749 1.01884 1.21176 0.95010 1.00490 0.94242 0.90206 1.21653 0.95771 1.00339 0.97624 1.21588 0.95574 1.01814 0.96563 1.22222 1.00756 0.94813 0.90120 1.61757 1.07937 1.54336 1.01851 1.22217 0.95256 0.98019 0.92671 1.21004 0.91477 0.99552 0.86042 1.45014 1.07385 1.65141 1.23455 1.15474 0.81622 0.79577 0.81424 1.90886 1.57238 1.50586 1.48783 1.47894 1.11328 1.59195 1.18030 1.21913 0.94598 0.95403 0.89824 1.22594 0.95512 1.01105 0.96218 1.19627 0.90860 0.81055 0.87635 1.86053 1.44748 1.38804 1.69847 1.21494 0.90607 1.50535 0.94963 0.91478 1.25091 0.99271 0.93507 0.95422 1.69567 1.21543 1.49061 1.13153 0.86385 0.81117 0.78373 0.80914 1.20395 1.20995 1.19706 1.23195 0.77832 1.00319 0.99677 1.22135 0.86841 0.98934 0.98624 0.92840 0.92433 0.92542 0.91840 0.92358 0.90897 0.91437 0.94859 0.89943 0.90139 0.94251 0.91009 0.91913 0.77528 0.92759 0.93215 0.90813 0.90488 0.76170 0.91863 0.92482 0.90126 0.90714 0.94924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.09 -0.64 2.88 -90.54 -0.26 -0.91 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.82 5.29 -26.61 -0.14 -0.96 16 5 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 6 C 0.05 0.46 5.29 -3.84 -0.02 0.44 16 7 N -0.53 -5.16 4.66 -234.67 -1.09 -6.25 16 8 C 0.05 0.47 5.07 -3.82 -0.02 0.45 16 9 C 0.14 1.93 5.60 -4.04 -0.02 1.91 16 10 N -0.75 -11.57 5.52 -65.23 -0.36 -11.93 16 11 C 0.72 14.96 8.49 -86.91 -0.74 14.22 16 12 O -0.60 -14.85 16.60 5.29 0.09 -14.76 16 13 N -0.63 -13.22 3.32 -176.09 -0.59 -13.81 16 14 C 0.11 1.85 6.15 -3.07 -0.02 1.83 16 15 C -0.12 -2.29 6.12 -24.89 -0.15 -2.44 16 16 C 0.25 6.06 0.89 -89.51 -0.08 5.98 16 17 O -0.58 -15.13 13.19 -35.23 -0.46 -15.60 16 18 C -0.54 -13.97 8.25 -34.44 -0.28 -14.25 16 19 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 20 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 21 N -0.89 -24.01 10.72 55.43 0.59 -23.42 16 22 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.11 2.74 5.64 -2.41 -0.01 2.72 16 27 C 0.06 0.50 4.74 -3.83 -0.02 0.48 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.86 6.21 -51.93 -0.32 0.54 16 37 H 0.08 0.73 7.99 -51.93 -0.41 0.31 16 38 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.91 6.43 -51.93 -0.33 0.58 16 41 H 0.39 4.97 7.46 -40.82 -0.30 4.66 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 46 H 0.39 10.39 6.93 45.56 0.32 10.71 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.06 1.43 8.04 -51.92 -0.42 1.01 16 49 H 0.08 2.24 7.64 -51.93 -0.40 1.84 16 50 H 0.07 0.57 8.01 -51.93 -0.42 0.15 16 51 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -30.33 394.79 -11.17 -41.49 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -8.59 Total: 13.37 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.68 Total: 9.61 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -1.44 Total: -55.41 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.38 Total: -30.36 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.33 -11.17 -41.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591913335.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.266 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds