Wall clock time and date at job start Fri Apr 10 2020 18:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 N 1.46895 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.48556 * 111.00556 * 290.12995 * 4 3 2 6 6 C 1.54378 * 104.59808 * 200.95955 * 5 4 3 7 7 C 1.54259 * 105.06047 * 23.85019 * 6 5 4 8 8 H 1.09003 * 110.32949 * 241.00396 * 7 6 5 9 9 C 1.53004 * 110.32641 * 118.89373 * 7 6 5 10 10 N 1.46500 * 109.46754 * 67.83015 * 9 7 6 11 11 C 1.34772 * 120.00075 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00212 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64469 * 0.04224 * 13 11 10 15 15 C 1.54912 * 104.83111 * 204.09005 * 14 13 11 16 16 C 1.55161 * 101.58368 * 322.99424 * 15 14 13 17 17 O 1.42904 * 110.87000 * 277.06967 * 16 15 14 18 18 C 1.50696 * 110.72357 * 153.86047 * 16 15 14 19 19 H 1.08003 * 120.00087 * 5.02528 * 18 16 15 20 20 C 1.37875 * 119.99956 * 185.01942 * 18 16 15 21 21 N 1.31510 * 120.00308 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99908 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46845 * 60.00735 * 22 20 18 24 24 H 1.48503 * 109.47399 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47295 * 300.00832 * 22 20 18 26 26 C 1.47022 * 125.65045 * 180.02562 * 13 11 10 27 27 C 1.48727 * 111.01688 * 174.61815 * 4 3 2 28 28 H 1.08993 * 109.47539 * 59.99480 * 1 2 3 29 29 H 1.09004 * 109.46710 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46489 * 299.99498 * 1 2 3 31 31 H 1.09003 * 109.46847 * 240.00322 * 2 1 3 32 32 H 1.08998 * 109.47215 * 120.00832 * 2 1 3 33 33 H 1.09003 * 109.47020 * 60.00428 * 3 2 1 34 34 H 1.09000 * 109.47043 * 300.00480 * 3 2 1 35 35 H 1.09002 * 110.41300 * 82.17605 * 5 4 3 36 36 H 1.08998 * 110.41044 * 319.73557 * 5 4 3 37 37 H 1.09005 * 110.32306 * 264.95634 * 6 5 4 38 38 H 1.09002 * 110.32725 * 142.74417 * 6 5 4 39 39 H 1.08999 * 109.47331 * 307.83477 * 9 7 6 40 40 H 1.08993 * 109.47185 * 187.82951 * 9 7 6 41 41 H 0.97002 * 120.00107 * 0.02562 * 10 9 7 42 42 H 1.08991 * 110.36793 * 322.92870 * 14 13 11 43 43 H 1.09001 * 110.36775 * 85.14991 * 14 13 11 44 44 H 1.08991 * 111.00679 * 204.91581 * 15 14 13 45 45 H 1.09009 * 111.00320 * 81.06128 * 15 14 13 46 46 H 0.96705 * 113.99671 * 177.45441 * 17 16 15 47 47 H 0.97000 * 119.99806 * 0.02562 * 21 20 18 48 48 H 1.09004 * 109.88129 * 59.55660 * 26 13 11 49 49 H 1.09001 * 109.87945 * 298.39497 * 26 13 11 50 50 H 1.08997 * 110.38714 * 40.24712 * 27 4 3 51 51 H 1.08999 * 110.50530 * 277.75842 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0409 0.9654 1.3030 6 6 5.4828 1.5142 1.3590 7 6 5.4832 2.7366 0.4180 8 1 6.1898 2.5859 -0.3982 9 6 5.8343 4.0062 1.1962 10 7 7.2308 3.9401 1.6340 11 6 7.7638 4.9553 2.3422 12 8 7.0855 5.9260 2.6182 13 7 9.0484 4.8942 2.7455 14 6 9.9797 3.7822 2.4818 15 6 11.0385 3.8760 3.6087 16 6 11.1870 5.4120 3.7697 17 8 12.0900 5.9409 2.7966 18 6 11.6434 5.7606 5.1630 19 1 11.8965 4.9758 5.8605 20 6 11.7381 7.0813 5.5472 21 7 11.4295 8.0369 4.6980 22 14 12.3045 7.5133 7.2740 23 1 13.6714 6.9765 7.4953 24 1 12.3200 8.9895 7.4352 25 1 11.3723 6.9173 8.2644 26 6 9.7531 5.9256 3.5208 27 6 4.0424 2.8246 -0.1296 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 4.0474 -0.1242 1.3349 36 1 3.4491 1.3671 2.1255 37 1 6.1880 0.7627 1.0037 38 1 5.7328 1.8188 2.3753 39 1 5.1841 4.0902 2.0671 40 1 5.6957 4.8760 0.5541 41 1 7.7718 3.1655 1.4142 42 1 9.4553 2.8281 2.5324 43 1 10.4501 3.9045 1.5061 44 1 11.9800 3.4227 3.2989 45 1 10.6714 3.4205 4.5286 46 1 12.1863 6.9026 2.8311 47 1 11.1350 7.8126 3.8015 48 1 9.2459 6.0853 4.4723 49 1 9.7861 6.8567 2.9551 50 1 3.4504 3.5180 0.4678 51 1 4.0512 3.1337 -1.1748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591927464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:00 Heat of formation + Delta-G solvation = -81.163710 kcal Electronic energy + Delta-G solvation = -28283.525708 eV Core-core repulsion = 24410.300208 eV Total energy + Delta-G solvation = -3873.225500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.06244 -39.36006 -37.73649 -35.68033 -34.62798 -33.91558 -32.26332 -31.29198 -30.15482 -29.54127 -27.75628 -26.47808 -25.14636 -24.11349 -22.60926 -22.27475 -21.20565 -20.16296 -19.92028 -19.42396 -18.20362 -17.40976 -16.70179 -16.12715 -15.78629 -15.48806 -15.32384 -14.84892 -14.52489 -14.05882 -13.94548 -13.85475 -13.74235 -13.62449 -13.30163 -13.02511 -12.89139 -12.75185 -12.51039 -12.29078 -12.10791 -11.95982 -11.71342 -11.48524 -11.30270 -11.14828 -11.12179 -11.07431 -10.93297 -10.86945 -10.77079 -10.69815 -10.54215 -10.15737 -9.73937 -9.35439 -8.93650 -8.85342 -8.64953 -8.29775 -7.93461 -6.56291 -4.39722 2.96994 3.36548 3.36886 3.56504 3.60539 3.62438 4.17707 4.31099 4.37448 4.47021 4.52458 4.64042 4.69410 4.92296 4.95944 4.98880 5.09659 5.12041 5.20382 5.23149 5.28626 5.34564 5.37238 5.44779 5.52349 5.55121 5.60719 5.62221 5.64278 5.71972 5.76656 5.80530 5.86002 5.87598 5.91347 6.01067 6.27524 6.47260 6.57331 6.63937 6.66109 6.69551 6.74998 6.92694 7.06977 7.45455 7.78969 8.16171 8.40512 8.55107 8.92040 9.00461 9.32540 10.73862 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.002104 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.864122 B =13305.015176 C =13426.419960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.043 3.957 4 N -0.512 5.512 5 C 0.033 3.967 6 C -0.124 4.124 7 C -0.103 4.103 8 H 0.087 0.913 9 C 0.148 3.852 10 N -0.749 5.749 11 C 0.716 3.284 12 O -0.596 6.596 13 N -0.629 5.629 14 C 0.103 3.897 15 C -0.107 4.107 16 C 0.227 3.773 17 O -0.585 6.585 18 C -0.613 4.613 19 H 0.061 0.939 20 C 0.028 3.972 21 N -0.901 5.901 22 Si 1.074 2.926 23 H -0.285 1.285 24 H -0.280 1.280 25 H -0.286 1.286 26 C 0.110 3.890 27 C 0.041 3.959 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.394 0.606 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.372 0.628 47 H 0.267 0.733 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.050 0.950 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.652 -15.813 -9.552 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.086 4.086 4 N -0.236 5.236 5 C -0.095 4.095 6 C -0.162 4.162 7 C -0.123 4.123 8 H 0.106 0.894 9 C 0.023 3.977 10 N -0.407 5.407 11 C 0.417 3.583 12 O -0.475 6.475 13 N -0.366 5.366 14 C -0.021 4.021 15 C -0.145 4.145 16 C 0.187 3.813 17 O -0.393 6.393 18 C -0.651 4.651 19 H 0.080 0.920 20 C -0.177 4.177 21 N -0.541 5.541 22 Si 0.901 3.099 23 H -0.212 1.212 24 H -0.205 1.205 25 H -0.212 1.212 26 C -0.012 4.012 27 C -0.087 4.087 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.228 0.772 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.221 0.779 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.734 -14.771 -8.980 23.375 hybrid contribution -0.495 -0.565 -0.352 0.830 sum -16.230 -15.336 -9.332 24.201 Atomic orbital electron populations 1.21747 0.95618 1.01810 1.01813 1.21482 0.95378 0.96197 1.02660 1.22332 0.87692 0.97491 1.01036 1.65418 1.07893 1.19146 1.31146 1.23133 0.95209 1.00788 0.90394 1.22432 0.96673 0.97033 1.00026 1.22134 0.97382 0.94455 0.98299 0.89432 1.21161 0.81725 0.96771 0.98004 1.45080 1.13217 1.22027 1.60346 1.15505 0.80881 0.82911 0.78955 1.90897 1.60453 1.33458 1.62660 1.47845 1.08811 1.22590 1.57359 1.22260 0.91350 0.88838 0.99627 1.22633 0.97449 0.97404 0.97055 1.19810 0.83861 0.89476 0.88130 1.86257 1.67052 1.26675 1.59319 1.22304 1.50391 0.95301 0.97150 0.92049 1.26022 0.93562 0.92456 1.05662 1.70994 1.41039 1.34963 1.07059 0.83466 0.76374 0.76462 0.73647 1.21151 1.20519 1.21185 1.23103 0.94594 0.89323 0.94227 1.23078 0.94014 0.90075 1.01560 0.92645 0.92504 0.92843 0.91159 0.92081 0.94560 0.90721 0.90088 0.93739 0.90751 0.90649 0.91919 0.91707 0.77233 0.92364 0.91928 0.90431 0.90267 0.77877 0.91874 0.91180 0.92811 0.93190 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.78 5.99 -26.73 -0.16 -0.94 16 3 C 0.04 0.32 4.81 -3.83 -0.02 0.30 16 4 N -0.51 -4.37 5.37 -229.84 -1.23 -5.60 16 5 C 0.03 0.27 5.74 -2.19 -0.01 0.26 16 6 C -0.12 -1.05 6.39 -25.35 -0.16 -1.21 16 7 C -0.10 -0.93 3.10 -89.24 -0.28 -1.21 16 8 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 9 C 0.15 1.81 4.74 -4.04 -0.02 1.79 16 10 N -0.75 -10.81 5.33 -65.23 -0.35 -11.15 16 11 C 0.72 14.34 8.49 -86.92 -0.74 13.60 16 12 O -0.60 -14.39 16.67 5.29 0.09 -14.31 16 13 N -0.63 -12.89 3.33 -176.24 -0.59 -13.48 16 14 C 0.10 1.75 6.57 -2.53 -0.02 1.73 16 15 C -0.11 -2.11 6.23 -24.58 -0.15 -2.27 16 16 C 0.23 5.48 0.82 -89.94 -0.07 5.40 16 17 O -0.58 -14.47 13.09 -35.23 -0.46 -14.93 16 18 C -0.61 -16.25 8.12 -34.44 -0.28 -16.53 16 19 H 0.06 1.60 7.78 -52.48 -0.41 1.20 16 20 C 0.03 0.76 5.26 -17.82 -0.09 0.67 16 21 N -0.90 -25.38 12.96 55.43 0.72 -24.66 16 22 Si 1.07 24.01 29.90 -169.99 -5.08 18.93 16 23 H -0.29 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 26 C 0.11 2.68 5.10 -3.06 -0.02 2.66 16 27 C 0.04 0.35 6.05 -2.09 -0.01 0.34 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.41 7.25 -51.93 -0.38 0.03 16 33 H 0.04 0.28 7.88 -51.93 -0.41 -0.13 16 34 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 35 H 0.08 0.61 7.76 -51.93 -0.40 0.21 16 36 H 0.04 0.38 7.82 -51.93 -0.41 -0.03 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.71 7.67 -51.93 -0.40 0.31 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.39 4.72 6.84 -40.82 -0.28 4.44 16 42 H 0.06 0.78 7.30 -51.93 -0.38 0.40 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.08 1.52 8.04 -51.92 -0.42 1.10 16 46 H 0.37 9.29 6.54 45.56 0.30 9.59 16 47 H 0.27 7.40 3.87 -40.82 -0.16 7.24 16 48 H 0.07 1.88 7.81 -51.93 -0.41 1.47 16 49 H 0.05 1.40 6.83 -51.93 -0.35 1.04 16 50 H 0.05 0.44 7.72 -51.93 -0.40 0.03 16 51 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -31.63 394.10 -11.00 -42.62 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -8.37 Total: 12.53 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.66 Total: 4.12 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -1.45 Total: -54.90 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.37 Total: -29.24 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -5.08 Total: 18.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.63 -11.00 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591927464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.539 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds