Wall clock time and date at job start Fri Apr 10 2020 18:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 N 1.46895 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.48556 * 111.00556 * 290.12995 * 4 3 2 6 6 C 1.54378 * 104.59808 * 200.95955 * 5 4 3 7 7 C 1.54259 * 105.06047 * 23.85019 * 6 5 4 8 8 H 1.09003 * 110.32949 * 241.00396 * 7 6 5 9 9 C 1.53004 * 110.32641 * 118.89373 * 7 6 5 10 10 N 1.46500 * 109.46754 * 67.83015 * 9 7 6 11 11 C 1.34772 * 120.00075 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00212 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64469 * 0.04224 * 13 11 10 15 15 C 1.54912 * 104.83111 * 204.09005 * 14 13 11 16 16 C 1.55161 * 101.58368 * 322.99424 * 15 14 13 17 17 O 1.42904 * 110.87000 * 277.06967 * 16 15 14 18 18 C 1.50696 * 110.72357 * 153.86047 * 16 15 14 19 19 H 1.08003 * 120.00087 * 5.02528 * 18 16 15 20 20 C 1.37875 * 119.99956 * 185.01942 * 18 16 15 21 21 N 1.31510 * 120.00308 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 119.99908 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46845 * 60.00735 * 22 20 18 24 24 H 1.48503 * 109.47399 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47295 * 300.00832 * 22 20 18 26 26 C 1.47022 * 125.65045 * 180.02562 * 13 11 10 27 27 C 1.48727 * 111.01688 * 174.61815 * 4 3 2 28 28 H 1.08993 * 109.47539 * 59.99480 * 1 2 3 29 29 H 1.09004 * 109.46710 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46489 * 299.99498 * 1 2 3 31 31 H 1.09003 * 109.46847 * 240.00322 * 2 1 3 32 32 H 1.08998 * 109.47215 * 120.00832 * 2 1 3 33 33 H 1.09003 * 109.47020 * 60.00428 * 3 2 1 34 34 H 1.09000 * 109.47043 * 300.00480 * 3 2 1 35 35 H 1.09002 * 110.41300 * 82.17605 * 5 4 3 36 36 H 1.08998 * 110.41044 * 319.73557 * 5 4 3 37 37 H 1.09005 * 110.32306 * 264.95634 * 6 5 4 38 38 H 1.09002 * 110.32725 * 142.74417 * 6 5 4 39 39 H 1.08999 * 109.47331 * 307.83477 * 9 7 6 40 40 H 1.08993 * 109.47185 * 187.82951 * 9 7 6 41 41 H 0.97002 * 120.00107 * 0.02562 * 10 9 7 42 42 H 1.08991 * 110.36793 * 322.92870 * 14 13 11 43 43 H 1.09001 * 110.36775 * 85.14991 * 14 13 11 44 44 H 1.08991 * 111.00679 * 204.91581 * 15 14 13 45 45 H 1.09009 * 111.00320 * 81.06128 * 15 14 13 46 46 H 0.96705 * 113.99671 * 177.45441 * 17 16 15 47 47 H 0.97000 * 119.99806 * 0.02562 * 21 20 18 48 48 H 1.09004 * 109.88129 * 59.55660 * 26 13 11 49 49 H 1.09001 * 109.87945 * 298.39497 * 26 13 11 50 50 H 1.08997 * 110.38714 * 40.24712 * 27 4 3 51 51 H 1.08999 * 110.50530 * 277.75842 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0409 0.9654 1.3030 6 6 5.4828 1.5142 1.3590 7 6 5.4832 2.7366 0.4180 8 1 6.1898 2.5859 -0.3982 9 6 5.8343 4.0062 1.1962 10 7 7.2308 3.9401 1.6340 11 6 7.7638 4.9553 2.3422 12 8 7.0855 5.9260 2.6182 13 7 9.0484 4.8942 2.7455 14 6 9.9797 3.7822 2.4818 15 6 11.0385 3.8760 3.6087 16 6 11.1870 5.4120 3.7697 17 8 12.0900 5.9409 2.7966 18 6 11.6434 5.7606 5.1630 19 1 11.8965 4.9758 5.8605 20 6 11.7381 7.0813 5.5472 21 7 11.4295 8.0369 4.6980 22 14 12.3045 7.5133 7.2740 23 1 13.6714 6.9765 7.4953 24 1 12.3200 8.9895 7.4352 25 1 11.3723 6.9173 8.2644 26 6 9.7531 5.9256 3.5208 27 6 4.0424 2.8246 -0.1296 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 4.0474 -0.1242 1.3349 36 1 3.4491 1.3671 2.1255 37 1 6.1880 0.7627 1.0037 38 1 5.7328 1.8188 2.3753 39 1 5.1841 4.0902 2.0671 40 1 5.6957 4.8760 0.5541 41 1 7.7718 3.1655 1.4142 42 1 9.4553 2.8281 2.5324 43 1 10.4501 3.9045 1.5061 44 1 11.9800 3.4227 3.2989 45 1 10.6714 3.4205 4.5286 46 1 12.1863 6.9026 2.8311 47 1 11.1350 7.8126 3.8015 48 1 9.2459 6.0853 4.4723 49 1 9.7861 6.8567 2.9551 50 1 3.4504 3.5180 0.4678 51 1 4.0512 3.1337 -1.1748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591927464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:59 Heat of formation + Delta-G solvation = -104.547696 kcal Electronic energy + Delta-G solvation = -28284.539713 eV Core-core repulsion = 24410.300208 eV Total energy + Delta-G solvation = -3874.239506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50134 -40.30075 -39.40135 -36.64289 -36.42244 -34.86301 -34.30016 -32.33663 -31.49639 -30.36915 -29.45685 -27.56126 -26.58608 -25.23443 -24.08344 -22.95637 -21.90801 -21.71994 -21.05685 -20.80495 -20.04545 -18.98951 -17.73829 -17.20119 -17.03304 -16.63590 -16.53053 -16.03629 -15.75833 -15.69402 -15.53695 -15.19822 -14.90325 -14.67048 -14.53406 -14.28810 -14.03470 -13.88187 -13.63567 -13.46175 -13.16072 -12.97679 -12.81769 -12.66577 -12.60921 -12.40381 -12.34500 -12.28653 -12.16829 -11.97462 -11.94516 -11.77755 -11.55966 -11.45182 -11.40201 -11.25486 -10.66562 -10.33922 -10.27483 -9.55600 -9.50963 -8.67634 -6.52987 1.50399 1.55295 1.61141 1.80330 2.02403 2.52334 2.87408 2.97830 3.02031 3.58778 3.61199 3.64660 3.76632 3.86401 3.91713 4.05410 4.12958 4.23707 4.26055 4.35057 4.41001 4.42894 4.47256 4.48881 4.56380 4.64131 4.65014 4.70679 4.79517 4.80804 4.88088 4.90642 4.92149 5.02038 5.09249 5.10711 5.14973 5.18079 5.22463 5.28549 5.32329 5.40064 5.42653 5.77295 5.82587 6.00261 6.04331 6.07795 6.43880 6.90057 6.94502 7.27551 7.45124 8.62848 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.002104 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.864122 B =13305.015176 C =13426.419960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.042 3.958 4 N -0.517 5.517 5 C 0.033 3.967 6 C -0.121 4.121 7 C -0.091 4.091 8 H 0.100 0.900 9 C 0.149 3.851 10 N -0.723 5.723 11 C 0.710 3.290 12 O -0.645 6.645 13 N -0.633 5.633 14 C 0.107 3.893 15 C -0.103 4.103 16 C 0.211 3.789 17 O -0.585 6.585 18 C -0.627 4.627 19 H 0.062 0.938 20 C -0.019 4.019 21 N -0.926 5.926 22 Si 1.116 2.884 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.128 3.872 27 C 0.041 3.959 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.038 0.962 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.410 0.590 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.366 0.634 47 H 0.260 0.740 48 H 0.033 0.967 49 H 0.023 0.977 50 H 0.044 0.956 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 -18.560 -10.177 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.086 4.086 4 N -0.241 5.241 5 C -0.095 4.095 6 C -0.159 4.159 7 C -0.110 4.110 8 H 0.118 0.882 9 C 0.025 3.975 10 N -0.381 5.381 11 C 0.412 3.588 12 O -0.527 6.527 13 N -0.370 5.370 14 C -0.014 4.014 15 C -0.140 4.140 16 C 0.171 3.829 17 O -0.393 6.393 18 C -0.665 4.665 19 H 0.081 0.919 20 C -0.218 4.218 21 N -0.567 5.567 22 Si 0.938 3.062 23 H -0.192 1.192 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.004 3.996 27 C -0.087 4.087 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.248 0.752 42 H 0.124 0.876 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.215 0.785 47 H 0.073 0.927 48 H 0.051 0.949 49 H 0.041 0.959 50 H 0.062 0.938 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.903 -17.609 -9.649 25.614 hybrid contribution -0.499 0.269 -0.192 0.598 sum -16.402 -17.340 -9.841 25.817 Atomic orbital electron populations 1.21732 0.94870 1.02266 1.01930 1.21441 0.96002 0.95444 1.02389 1.22372 0.87136 0.98122 1.00981 1.65454 1.08522 1.18850 1.31231 1.23145 0.94947 1.01285 0.90110 1.22425 0.97202 0.96954 0.99321 1.22040 0.97972 0.92803 0.98205 0.88186 1.21279 0.80054 0.98430 0.97721 1.44885 1.14037 1.20819 1.58328 1.15748 0.80447 0.83402 0.79213 1.90862 1.61607 1.35738 1.64525 1.47786 1.09445 1.22705 1.57095 1.22443 0.90458 0.89541 0.99004 1.22645 0.99180 0.93724 0.98499 1.20018 0.83120 0.92575 0.87144 1.86240 1.67271 1.26289 1.59468 1.22670 1.49930 0.95427 0.98488 0.91928 1.27314 0.93242 0.92867 1.08408 1.71071 1.42711 1.35643 1.07245 0.82928 0.77161 0.75971 0.70172 1.19161 1.21163 1.19821 1.22579 0.95105 0.89465 0.92489 1.23085 0.93509 0.90216 1.01928 0.92329 0.91892 0.92939 0.91431 0.92268 0.95023 0.90378 0.89214 0.94374 0.89291 0.91557 0.93143 0.92577 0.75249 0.87582 0.90792 0.88913 0.89744 0.78514 0.92717 0.94860 0.95851 0.93775 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.11 -1.33 5.99 30.59 0.18 -1.14 16 3 C 0.04 0.56 4.81 86.30 0.42 0.98 16 4 N -0.52 -7.81 5.37 -881.07 -4.73 -12.54 16 5 C 0.03 0.48 5.74 86.45 0.50 0.97 16 6 C -0.12 -1.74 6.39 31.49 0.20 -1.54 16 7 C -0.09 -1.43 3.10 -9.90 -0.03 -1.46 16 8 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 9 C 0.15 3.48 4.74 86.38 0.41 3.89 16 10 N -0.72 -19.55 5.33 -478.54 -2.55 -22.10 16 11 C 0.71 28.24 8.49 179.05 1.52 29.76 16 12 O -0.64 -32.01 16.67 -4.00 -0.07 -32.08 16 13 N -0.63 -25.63 3.33 -829.75 -2.76 -28.39 16 14 C 0.11 3.34 6.57 86.86 0.57 3.91 16 15 C -0.10 -3.82 6.23 31.99 0.20 -3.62 16 16 C 0.21 10.22 0.82 -10.35 -0.01 10.21 16 17 O -0.59 -29.19 13.09 -148.98 -1.95 -31.14 16 18 C -0.63 -33.43 8.12 25.60 0.21 -33.22 16 19 H 0.06 3.24 7.78 -2.91 -0.02 3.22 16 20 C -0.02 -1.01 5.26 84.65 0.45 -0.56 16 21 N -0.93 -53.78 12.96 21.45 0.28 -53.50 16 22 Si 1.12 48.42 29.90 68.60 2.05 50.47 16 23 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 24 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 C 0.13 6.42 5.10 86.73 0.44 6.86 16 27 C 0.04 0.63 6.05 86.42 0.52 1.15 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.70 7.25 -2.39 -0.02 0.69 16 33 H 0.03 0.46 7.88 -2.39 -0.02 0.44 16 34 H 0.08 0.99 8.13 -2.39 -0.02 0.97 16 35 H 0.09 1.15 7.76 -2.39 -0.02 1.13 16 36 H 0.04 0.60 7.82 -2.39 -0.02 0.58 16 37 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.07 1.10 7.67 -2.39 -0.02 1.08 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.41 8.40 6.84 -92.71 -0.63 7.76 16 42 H 0.11 2.33 7.30 -2.39 -0.02 2.32 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.09 3.17 8.14 -2.39 -0.02 3.16 16 45 H 0.08 3.04 8.04 -2.38 -0.02 3.02 16 46 H 0.37 18.93 6.54 -74.05 -0.48 18.45 16 47 H 0.26 15.05 3.87 -92.71 -0.36 14.69 16 48 H 0.03 1.87 7.81 -2.39 -0.02 1.85 16 49 H 0.02 1.28 6.83 -2.39 -0.02 1.26 16 50 H 0.04 0.73 7.72 -2.39 -0.02 0.71 16 51 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -70.70 394.10 -3.23 -73.94 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: 0.21 Total: 39.87 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.29 Total: 15.47 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -9.76 Total: -116.54 kcal Atomic # 8 Polarization: -61.20 SS G_CDS: -2.02 Total: -63.21 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.05 Total: 50.47 kcal Total: -70.70 -3.23 -73.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591927464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.611 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds