Wall clock time and date at job start Fri Apr 10 2020 18:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46940 * 2 1 4 4 N 1.46504 * 109.47113 * 119.99741 * 2 1 3 5 5 C 1.34779 * 119.99650 * 274.99980 * 4 2 1 6 6 O 1.21584 * 120.00198 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99599 * 179.97438 * 5 4 2 8 8 C 1.47027 * 125.65184 * 0.02968 * 7 5 4 9 9 C 1.54327 * 107.27242 * 181.02096 * 8 7 5 10 10 C 1.55157 * 102.94231 * 22.19070 * 9 8 7 11 11 O 1.42902 * 111.00005 * 82.57171 * 10 9 8 12 12 C 1.50696 * 111.00462 * 206.38708 * 10 9 8 13 13 H 1.08001 * 120.00072 * 359.97438 * 12 10 9 14 14 C 1.37878 * 120.00110 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99730 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99997 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47520 * 59.99117 * 16 14 12 18 18 H 1.48498 * 109.47002 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46946 * 299.98743 * 16 14 12 20 20 C 1.47426 * 125.64717 * 179.71796 * 7 5 4 21 21 C 1.52999 * 109.47684 * 239.99749 * 2 1 3 22 22 C 1.53123 * 109.52253 * 59.99909 * 21 2 1 23 23 C 1.53036 * 109.27788 * 177.56250 * 22 21 2 24 24 N 1.46842 * 109.52190 * 300.81892 * 23 22 21 25 25 C 1.46907 * 110.99676 * 185.84074 * 24 23 22 26 26 C 1.46848 * 111.20069 * 61.74451 * 24 23 22 27 27 C 1.53032 * 109.52348 * 298.25721 * 26 24 23 28 28 H 1.09003 * 109.46940 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47340 * 300.00084 * 1 2 3 30 30 H 1.09004 * 109.47118 * 60.00903 * 1 2 3 31 31 H 0.96997 * 120.00006 * 95.00588 * 4 2 1 32 32 H 1.08993 * 109.87797 * 300.43904 * 8 7 5 33 33 H 1.09001 * 109.87952 * 61.60222 * 8 7 5 34 34 H 1.08994 * 110.71752 * 140.55846 * 9 8 7 35 35 H 1.09006 * 110.71483 * 263.65251 * 9 8 7 36 36 H 0.96698 * 113.99811 * 179.97438 * 11 10 9 37 37 H 0.96999 * 119.99603 * 180.02562 * 15 14 12 38 38 H 1.09000 * 110.36683 * 274.75079 * 20 7 5 39 39 H 1.08998 * 110.36580 * 37.07753 * 20 7 5 40 40 H 1.09007 * 109.57411 * 299.84123 * 21 2 1 41 41 H 1.09000 * 109.50367 * 57.61795 * 22 21 2 42 42 H 1.09006 * 109.50264 * 297.50134 * 22 21 2 43 43 H 1.09002 * 109.46126 * 60.83950 * 23 22 21 44 44 H 1.09000 * 109.45813 * 180.81566 * 23 22 21 45 45 H 1.08999 * 109.47230 * 60.00489 * 25 24 23 46 46 H 1.09004 * 109.46916 * 180.02562 * 25 24 23 47 47 H 1.08994 * 109.47211 * 299.99867 * 25 24 23 48 48 H 1.09003 * 109.46014 * 58.27448 * 26 24 23 49 49 H 1.08995 * 109.46374 * 178.23478 * 26 24 23 50 50 H 1.08996 * 109.50421 * 179.11872 * 27 26 24 51 51 H 1.08998 * 109.50355 * 299.19707 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8574 1.1615 2.4118 7 7 2.5958 -0.6535 3.4577 8 6 2.9796 -2.0708 3.5324 9 6 3.4024 -2.3550 4.9891 10 6 2.6954 -1.2247 5.7829 11 8 1.3343 -1.5643 6.0552 12 6 3.4371 -0.9144 7.0575 13 1 4.3359 -1.4594 7.3056 14 6 2.9677 0.0645 7.9074 15 7 1.8729 0.7278 7.6055 16 14 3.8875 0.4495 9.4870 17 1 5.2681 0.8888 9.1615 18 1 3.1832 1.5332 10.2183 19 1 3.9425 -0.7670 10.3369 20 6 2.7892 -0.0409 4.7847 21 6 2.0401 -0.7213 -1.2492 22 6 1.5304 -0.0005 -2.5003 23 6 2.0933 -0.6899 -3.7452 24 7 3.5607 -0.6569 -3.7032 25 6 4.1350 -1.1862 -4.9474 26 6 4.0750 -1.3837 -2.5353 27 6 3.5713 -0.7150 -1.2543 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 2.2491 -1.6317 1.1527 32 1 2.1307 -2.6993 3.2634 33 1 3.8149 -2.2646 2.8594 34 1 3.0454 -3.3334 5.3104 35 1 4.4850 -2.2866 5.0967 36 1 0.8517 -0.8880 6.5499 37 1 1.5429 1.4167 8.2033 38 1 3.7693 0.4323 4.8448 39 1 2.0027 0.6866 4.9849 40 1 1.6800 -1.7502 -1.2494 41 1 1.8581 1.0389 -2.4803 42 1 0.4413 -0.0389 -2.5241 43 1 1.7538 -1.7254 -3.7717 44 1 1.7439 -0.1702 -4.6373 45 1 3.7959 -0.5829 -5.7895 46 1 5.2229 -1.1507 -4.8894 47 1 3.8124 -2.2180 -5.0864 48 1 3.7263 -2.4159 -2.5675 49 1 5.1647 -1.3682 -2.5489 50 1 3.9404 -1.2639 -0.3880 51 1 3.9317 0.3129 -1.2144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591961261.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:06 Heat of formation + Delta-G solvation = -82.851017 kcal Electronic energy + Delta-G solvation = -29170.885880 eV Core-core repulsion = 25297.587213 eV Total energy + Delta-G solvation = -3873.298667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.06236 -39.13681 -37.45317 -35.84979 -34.20489 -32.81636 -32.12214 -31.27724 -30.42791 -29.29853 -27.71514 -26.76621 -25.10311 -23.77944 -23.14990 -22.53122 -20.95403 -20.13725 -19.58994 -19.23546 -17.56127 -17.04718 -16.11433 -15.92762 -15.36790 -15.12371 -15.03441 -14.89601 -14.41896 -14.33396 -14.15647 -13.60589 -13.53513 -13.38965 -12.99978 -12.77963 -12.77560 -12.59778 -12.47744 -12.06330 -11.94934 -11.69153 -11.60194 -11.52046 -11.38156 -11.32661 -11.01321 -10.78291 -10.72917 -10.56815 -10.55478 -10.48216 -10.40860 -10.15704 -9.54473 -9.35998 -8.75756 -8.65711 -8.61934 -8.33701 -7.62893 -6.26682 -4.36297 3.17405 3.24346 3.29160 3.31047 3.63975 3.82216 4.26758 4.44002 4.47601 4.57488 4.65878 4.87684 5.00205 5.02439 5.05163 5.13871 5.23331 5.31514 5.34798 5.43707 5.44241 5.52146 5.53431 5.55688 5.62122 5.67644 5.77739 5.80088 5.81597 5.87599 5.97814 6.04398 6.06613 6.16084 6.27165 6.39473 6.53773 6.73507 6.76416 6.79223 6.90565 6.91088 7.01975 7.26957 7.35831 7.70265 7.76977 8.03312 8.59850 8.68514 9.21679 9.33399 9.49174 10.80508 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025948 B = 0.002571 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.829168 B =10886.355064 C =11239.049037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 H 0.087 0.913 4 N -0.746 5.746 5 C 0.717 3.283 6 O -0.597 6.597 7 N -0.628 5.628 8 C 0.107 3.893 9 C -0.117 4.117 10 C 0.250 3.750 11 O -0.584 6.584 12 C -0.538 4.538 13 H 0.066 0.934 14 C 0.071 3.929 15 N -0.894 5.894 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.112 3.888 21 C -0.094 4.094 22 C -0.110 4.110 23 C 0.057 3.943 24 N -0.544 5.544 25 C 0.025 3.975 26 C 0.056 3.944 27 C -0.110 4.110 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.390 0.610 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.386 0.614 37 H 0.272 0.728 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.023 0.977 48 H 0.031 0.969 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -5.797 -21.399 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.105 0.895 4 N -0.402 5.402 5 C 0.419 3.581 6 O -0.476 6.476 7 N -0.365 5.365 8 C -0.017 4.017 9 C -0.155 4.155 10 C 0.209 3.791 11 O -0.395 6.395 12 C -0.577 4.577 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.533 5.533 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.010 4.010 21 C -0.113 4.113 22 C -0.148 4.148 23 C -0.071 4.071 24 N -0.269 5.269 25 C -0.123 4.123 26 C -0.071 4.071 27 C -0.148 4.148 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.224 0.776 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.238 0.762 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.371 -4.772 -21.616 22.179 hybrid contribution 0.188 -0.598 1.004 1.183 sum 1.559 -5.371 -20.612 21.357 Atomic orbital electron populations 1.22257 0.95855 1.01784 1.02470 1.20703 0.93481 0.97156 0.82392 0.89517 1.45197 1.72745 1.13289 1.08959 1.15525 0.78397 0.84605 0.79561 1.90875 1.57992 1.14500 1.84268 1.47894 1.67492 1.10831 1.10241 1.21896 0.97927 0.82903 0.98934 1.22596 1.00244 1.00481 0.92138 1.19617 0.81061 0.87517 0.90917 1.86055 1.25031 1.49700 1.78671 1.21458 1.11168 1.20153 1.04878 0.91567 1.25085 0.94907 0.94831 0.98425 1.69563 1.21780 1.24061 1.37917 0.86446 0.79822 0.78030 0.82506 1.20016 1.21074 1.20018 1.23171 1.00880 0.98801 0.78149 1.21480 0.95877 0.99725 0.94242 1.21658 1.00095 1.00493 0.92591 1.22093 0.87204 0.98957 0.98844 1.61928 1.07024 1.55314 1.02605 1.22348 1.00299 0.97602 0.92070 1.22113 0.99791 0.94885 0.90359 1.21616 0.94732 1.02263 0.96218 0.92877 0.91762 0.91846 0.77642 0.92780 0.93319 0.90867 0.90545 0.76189 0.91820 0.92575 0.90164 0.91163 0.90608 0.90818 0.95004 0.90746 0.91415 0.91408 0.95855 0.95030 0.90772 0.91209 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.13 37.16 0.34 -1.69 16 2 C 0.17 2.15 2.16 -67.93 -0.15 2.01 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.75 -11.13 4.39 -58.67 -0.26 -11.39 16 5 C 0.72 14.59 8.45 -86.92 -0.73 13.86 16 6 O -0.60 -14.51 16.26 5.29 0.09 -14.43 16 7 N -0.63 -13.06 3.33 -176.09 -0.59 -13.65 16 8 C 0.11 1.86 6.15 -3.06 -0.02 1.84 16 9 C -0.12 -2.30 6.12 -24.89 -0.15 -2.45 16 10 C 0.25 6.06 0.89 -89.50 -0.08 5.98 16 11 O -0.58 -15.13 13.19 -35.23 -0.46 -15.60 16 12 C -0.54 -13.98 8.25 -34.44 -0.28 -14.26 16 13 H 0.07 1.67 7.77 -52.49 -0.41 1.26 16 14 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 15 N -0.89 -24.01 10.72 55.43 0.59 -23.42 16 16 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C 0.11 2.73 5.65 -2.41 -0.01 2.72 16 21 C -0.09 -0.91 1.89 -90.49 -0.17 -1.08 16 22 C -0.11 -0.94 4.95 -26.65 -0.13 -1.07 16 23 C 0.06 0.45 5.46 -3.84 -0.02 0.43 16 24 N -0.54 -4.81 4.91 -242.96 -1.19 -6.00 16 25 C 0.03 0.18 9.59 60.07 0.58 0.75 16 26 C 0.06 0.49 5.46 -3.84 -0.02 0.47 16 27 C -0.11 -1.10 5.19 -26.65 -0.14 -1.24 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.63 6.49 -51.93 -0.34 0.30 16 31 H 0.39 4.97 7.40 -40.82 -0.30 4.67 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.41 8.02 -51.93 -0.42 1.00 16 36 H 0.39 10.40 6.93 45.56 0.32 10.71 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.06 1.40 8.04 -51.93 -0.42 0.98 16 39 H 0.08 2.22 7.64 -51.93 -0.40 1.82 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.56 6.58 -51.93 -0.34 0.22 16 43 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 47 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 48 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 50 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -30.11 392.61 -10.58 -40.69 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -8.56 Total: 14.50 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -1.09 Total: 8.03 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -1.44 Total: -54.46 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.38 Total: -30.03 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.11 -10.58 -40.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591961261.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.164 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds