Wall clock time and date at job start Fri Apr 10 2020 18:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47011 * 2 1 4 4 N 1.46498 * 109.47448 * 239.99499 * 2 1 3 5 5 C 1.34778 * 119.99694 * 85.00018 * 4 2 1 6 6 O 1.21575 * 120.00309 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99588 * 180.02562 * 5 4 2 8 8 C 1.47027 * 125.65101 * 359.69275 * 7 5 4 9 9 C 1.54332 * 107.26652 * 178.84706 * 8 7 5 10 10 C 1.55154 * 103.02069 * 338.14515 * 9 8 7 11 11 O 1.42907 * 111.00350 * 277.22819 * 10 9 8 12 12 C 1.50703 * 111.03927 * 153.39481 * 10 9 8 13 13 H 1.08002 * 119.99796 * 6.32758 * 12 10 9 14 14 C 1.37877 * 120.00238 * 186.33027 * 12 10 9 15 15 N 1.31516 * 119.99897 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00142 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47017 * 60.00052 * 16 14 12 18 18 H 1.48501 * 109.47129 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46954 * 300.00010 * 16 14 12 20 20 C 1.47426 * 125.64574 * 179.97438 * 7 5 4 21 21 C 1.53002 * 109.46847 * 119.99432 * 2 1 3 22 22 C 1.53120 * 109.52672 * 300.00337 * 21 2 1 23 23 C 1.53034 * 109.27801 * 177.55755 * 22 21 2 24 24 N 1.46844 * 109.52562 * 300.81915 * 23 22 21 25 25 C 1.46901 * 110.99853 * 185.84262 * 24 23 22 26 26 C 1.46844 * 111.19606 * 61.74408 * 24 23 22 27 27 C 1.53038 * 109.52314 * 298.25515 * 26 24 23 28 28 H 1.09001 * 109.47401 * 300.00519 * 1 2 3 29 29 H 1.09001 * 109.47056 * 60.00311 * 1 2 3 30 30 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00113 * 265.00760 * 4 2 1 32 32 H 1.08999 * 109.88258 * 298.39498 * 8 7 5 33 33 H 1.09003 * 109.88223 * 59.55990 * 8 7 5 34 34 H 1.08995 * 110.85125 * 219.67173 * 9 8 7 35 35 H 1.09004 * 110.51187 * 96.45092 * 9 8 7 36 36 H 0.96701 * 114.00016 * 173.65517 * 11 10 9 37 37 H 0.96995 * 119.99958 * 180.02562 * 15 14 12 38 38 H 1.08994 * 110.37068 * 322.92892 * 20 7 5 39 39 H 1.08995 * 110.36457 * 85.14751 * 20 7 5 40 40 H 1.08996 * 109.57230 * 179.83959 * 21 2 1 41 41 H 1.08995 * 109.50416 * 57.61131 * 22 21 2 42 42 H 1.09001 * 109.50010 * 297.49782 * 22 21 2 43 43 H 1.09007 * 109.46058 * 180.79762 * 23 22 21 44 44 H 1.09003 * 109.46202 * 60.84204 * 23 22 21 45 45 H 1.09002 * 109.47401 * 59.99789 * 25 24 23 46 46 H 1.09001 * 109.46874 * 299.99802 * 25 24 23 47 47 H 1.09004 * 109.46970 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.46425 * 58.27678 * 26 24 23 49 49 H 1.09008 * 109.45740 * 178.24323 * 26 24 23 50 50 H 1.09000 * 109.50747 * 299.24167 * 27 26 24 51 51 H 1.08999 * 109.53552 * 179.14132 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8584 1.1613 -2.4117 7 7 2.5960 -0.6539 -3.4575 8 6 2.9853 -2.0699 -3.5305 9 6 3.4028 -2.3556 -4.9886 10 6 2.6956 -1.2257 -5.7825 11 8 1.3344 -1.5655 -6.0547 12 6 3.4368 -0.9145 -7.0572 13 1 4.2759 -1.5250 -7.3567 14 6 3.0438 0.1495 -7.8411 15 7 2.0217 0.8926 -7.4767 16 14 3.9630 0.5356 -9.4208 17 1 3.8867 -0.6316 -10.3358 18 1 3.3476 1.7180 -10.0753 19 1 5.3850 0.8268 -9.1075 20 6 2.7834 -0.0431 -4.7861 21 6 2.0399 -0.7211 1.2493 22 6 1.5301 -0.0002 2.5003 23 6 1.9924 -0.7606 3.7453 24 7 1.4723 -2.1332 3.7035 25 6 1.7797 -2.8509 4.9478 26 6 1.9862 -2.8603 2.5358 27 6 1.5236 -2.1627 1.2546 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6319 -1.1525 32 1 3.8229 -2.2591 -2.8591 33 1 2.1395 -2.7014 -3.2586 34 1 3.0459 -3.3342 -5.3096 35 1 4.4850 -2.2839 -5.0970 36 1 0.8249 -0.8520 -6.4628 37 1 1.7450 1.6408 -8.0283 38 1 1.9933 0.6807 -4.9858 39 1 3.7605 0.4359 -4.8489 40 1 3.1299 -0.7246 1.2496 41 1 0.4410 0.0373 2.4803 42 1 1.9294 1.0138 2.5240 43 1 1.6191 -0.2577 4.6375 44 1 3.0818 -0.7856 3.7719 45 1 1.3240 -2.3299 5.7899 46 1 2.8601 -2.8906 5.0868 47 1 1.3829 -3.8645 4.8902 48 1 3.0755 -2.8757 2.5680 49 1 1.6081 -3.8827 2.5494 50 1 0.4344 -2.1592 1.2149 51 1 1.9176 -2.6935 0.3879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591961263.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:12 Heat of formation + Delta-G solvation = -79.689928 kcal Electronic energy + Delta-G solvation = -29202.037169 eV Core-core repulsion = 25328.875577 eV Total energy + Delta-G solvation = -3873.161592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.14868 -39.17356 -37.46597 -35.91185 -34.18071 -32.79185 -32.19964 -31.14789 -30.39903 -29.27400 -27.67644 -26.73631 -25.12108 -23.91589 -23.53196 -22.54411 -21.24173 -19.65138 -19.41356 -19.20604 -17.57907 -17.00165 -16.15394 -15.75025 -15.40017 -15.14095 -15.00808 -14.96623 -14.87681 -14.35709 -14.12716 -13.73327 -13.60183 -13.14655 -13.04001 -12.81211 -12.74767 -12.70023 -12.39785 -12.02491 -11.86863 -11.85452 -11.63962 -11.62772 -11.37372 -11.06366 -11.00214 -10.82059 -10.75159 -10.61733 -10.58290 -10.46943 -10.27311 -10.16316 -9.53362 -9.32841 -8.75930 -8.66519 -8.64554 -8.32412 -7.64004 -6.24446 -4.34411 3.17913 3.24937 3.29827 3.31689 3.61749 3.81860 4.27886 4.45780 4.47117 4.54725 4.63911 4.87239 4.99210 5.02453 5.03533 5.09707 5.20844 5.30106 5.36822 5.38339 5.43852 5.51868 5.53935 5.55137 5.57777 5.67273 5.75241 5.78327 5.83326 5.85990 5.97593 6.03213 6.07885 6.13350 6.23231 6.46204 6.53817 6.73309 6.75047 6.76646 6.91242 6.92189 7.02756 7.27629 7.36570 7.71606 7.77423 8.06823 8.60175 8.70249 9.21531 9.33147 9.41336 10.82493 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029852 B = 0.002533 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.738109 B =11049.591629 C =11468.218474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.168 3.832 3 H 0.085 0.915 4 N -0.747 5.747 5 C 0.716 3.284 6 O -0.597 6.597 7 N -0.629 5.629 8 C 0.106 3.894 9 C -0.116 4.116 10 C 0.249 3.751 11 O -0.583 6.583 12 C -0.538 4.538 13 H 0.065 0.935 14 C 0.071 3.929 15 N -0.891 5.891 16 Si 0.903 3.097 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.114 3.886 21 C -0.095 4.095 22 C -0.112 4.112 23 C 0.057 3.943 24 N -0.543 5.543 25 C 0.025 3.975 26 C 0.056 3.944 27 C -0.116 4.116 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.390 0.610 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.381 0.619 37 H 0.270 0.730 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.032 0.968 45 H 0.067 0.933 46 H 0.023 0.977 47 H 0.067 0.933 48 H 0.032 0.968 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 -6.666 21.443 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.103 0.897 4 N -0.404 5.404 5 C 0.418 3.582 6 O -0.476 6.476 7 N -0.366 5.366 8 C -0.018 4.018 9 C -0.154 4.154 10 C 0.208 3.792 11 O -0.391 6.391 12 C -0.577 4.577 13 H 0.084 0.916 14 C -0.132 4.132 15 N -0.530 5.530 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.008 4.008 21 C -0.114 4.114 22 C -0.150 4.150 23 C -0.071 4.071 24 N -0.268 5.268 25 C -0.123 4.123 26 C -0.072 4.072 27 C -0.153 4.153 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.225 0.775 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.086 0.914 48 H 0.050 0.950 49 H 0.093 0.907 50 H 0.099 0.901 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.545 -6.119 21.613 22.469 hybrid contribution 1.375 0.256 -0.954 1.693 sum 0.830 -5.863 20.658 21.490 Atomic orbital electron populations 1.22301 0.95707 1.02077 1.02337 1.20653 0.93864 0.96791 0.82406 0.89690 1.45269 1.72756 1.13392 1.08986 1.15539 0.78410 0.84620 0.79599 1.90872 1.58019 1.14455 1.84269 1.47938 1.67426 1.10969 1.10265 1.21907 0.97916 0.82992 0.98949 1.22585 1.00323 1.00412 0.92056 1.19620 0.80882 0.87676 0.91019 1.86100 1.24254 1.44733 1.84040 1.21412 1.15967 1.13912 1.06385 0.91640 1.25081 0.94799 0.95202 0.98150 1.69713 1.25984 1.18558 1.38723 0.86470 0.79900 0.77843 0.82718 1.20034 1.21104 1.20053 1.23102 1.01306 0.98603 0.77775 1.21469 1.00339 0.95336 0.94284 1.21672 1.02422 0.98308 0.92572 1.22094 0.97127 0.89067 0.98850 1.61925 1.59791 1.02478 1.02577 1.22349 0.98737 0.99192 0.92063 1.22098 0.97167 0.97557 0.90343 1.21723 1.02508 0.94889 0.96223 0.91795 0.91952 0.92381 0.77540 0.93313 0.92773 0.90827 0.90502 0.76937 0.91956 0.89685 0.92617 0.91014 0.90170 0.91105 0.90716 0.94994 0.91405 0.95828 0.91398 0.94991 0.90728 0.90127 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 8.78 37.16 0.33 -1.75 16 2 C 0.17 2.17 2.41 -67.93 -0.16 2.01 16 3 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 4 N -0.75 -11.31 4.96 -58.68 -0.29 -11.60 16 5 C 0.72 14.70 8.45 -86.92 -0.73 13.97 16 6 O -0.60 -14.58 16.26 5.30 0.09 -14.49 16 7 N -0.63 -13.17 3.33 -176.25 -0.59 -13.76 16 8 C 0.11 1.85 6.15 -3.06 -0.02 1.83 16 9 C -0.12 -2.29 6.13 -24.89 -0.15 -2.44 16 10 C 0.25 6.03 0.87 -89.63 -0.08 5.95 16 11 O -0.58 -14.90 13.16 -35.23 -0.46 -15.36 16 12 C -0.54 -14.03 8.27 -34.44 -0.28 -14.31 16 13 H 0.07 1.66 7.79 -52.49 -0.41 1.26 16 14 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 15 N -0.89 -24.00 10.69 55.43 0.59 -23.41 16 16 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 C 0.11 2.79 5.38 -2.54 -0.01 2.78 16 21 C -0.10 -0.92 2.25 -90.49 -0.20 -1.13 16 22 C -0.11 -0.95 5.09 -26.65 -0.14 -1.09 16 23 C 0.06 0.45 5.46 -3.84 -0.02 0.43 16 24 N -0.54 -4.54 4.91 -242.96 -1.19 -5.74 16 25 C 0.02 0.17 9.59 60.07 0.58 0.74 16 26 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 27 C -0.12 -1.03 4.87 -26.65 -0.13 -1.16 16 28 H 0.06 0.67 6.38 -51.93 -0.33 0.34 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.68 6.37 -51.93 -0.33 0.35 16 31 H 0.39 5.05 5.92 -40.82 -0.24 4.81 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 36 H 0.38 10.04 7.56 45.56 0.34 10.38 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.08 2.35 7.33 -51.93 -0.38 1.97 16 39 H 0.06 1.41 8.03 -51.93 -0.42 1.00 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.71 6.31 -51.93 -0.33 0.38 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 44 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 48 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.07 0.56 8.09 -51.92 -0.42 0.14 16 50 H 0.08 0.77 6.31 -51.93 -0.33 0.44 16 51 H 0.07 0.57 6.61 -51.93 -0.34 0.23 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -30.20 386.88 -10.39 -40.59 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -8.20 Total: 14.47 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.15 Total: 8.05 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -1.48 Total: -54.50 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.38 Total: -29.85 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.20 -10.39 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591961263.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.099 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds