Wall clock time and date at job start Fri Apr 10 2020 18:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47011 * 2 1 4 4 N 1.46498 * 109.47448 * 239.99499 * 2 1 3 5 5 C 1.34778 * 119.99694 * 85.00018 * 4 2 1 6 6 O 1.21575 * 120.00309 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99588 * 180.02562 * 5 4 2 8 8 C 1.47027 * 125.65101 * 359.69275 * 7 5 4 9 9 C 1.54332 * 107.26652 * 178.84706 * 8 7 5 10 10 C 1.55154 * 103.02069 * 338.14515 * 9 8 7 11 11 O 1.42907 * 111.00350 * 277.22819 * 10 9 8 12 12 C 1.50703 * 111.03927 * 153.39481 * 10 9 8 13 13 H 1.08002 * 119.99796 * 6.32758 * 12 10 9 14 14 C 1.37877 * 120.00238 * 186.33027 * 12 10 9 15 15 N 1.31516 * 119.99897 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00142 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47017 * 60.00052 * 16 14 12 18 18 H 1.48501 * 109.47129 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.46954 * 300.00010 * 16 14 12 20 20 C 1.47426 * 125.64574 * 179.97438 * 7 5 4 21 21 C 1.53002 * 109.46847 * 119.99432 * 2 1 3 22 22 C 1.53120 * 109.52672 * 300.00337 * 21 2 1 23 23 C 1.53034 * 109.27801 * 177.55755 * 22 21 2 24 24 N 1.46844 * 109.52562 * 300.81915 * 23 22 21 25 25 C 1.46901 * 110.99853 * 185.84262 * 24 23 22 26 26 C 1.46844 * 111.19606 * 61.74408 * 24 23 22 27 27 C 1.53038 * 109.52314 * 298.25515 * 26 24 23 28 28 H 1.09001 * 109.47401 * 300.00519 * 1 2 3 29 29 H 1.09001 * 109.47056 * 60.00311 * 1 2 3 30 30 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00113 * 265.00760 * 4 2 1 32 32 H 1.08999 * 109.88258 * 298.39498 * 8 7 5 33 33 H 1.09003 * 109.88223 * 59.55990 * 8 7 5 34 34 H 1.08995 * 110.85125 * 219.67173 * 9 8 7 35 35 H 1.09004 * 110.51187 * 96.45092 * 9 8 7 36 36 H 0.96701 * 114.00016 * 173.65517 * 11 10 9 37 37 H 0.96995 * 119.99958 * 180.02562 * 15 14 12 38 38 H 1.08994 * 110.37068 * 322.92892 * 20 7 5 39 39 H 1.08995 * 110.36457 * 85.14751 * 20 7 5 40 40 H 1.08996 * 109.57230 * 179.83959 * 21 2 1 41 41 H 1.08995 * 109.50416 * 57.61131 * 22 21 2 42 42 H 1.09001 * 109.50010 * 297.49782 * 22 21 2 43 43 H 1.09007 * 109.46058 * 180.79762 * 23 22 21 44 44 H 1.09003 * 109.46202 * 60.84204 * 23 22 21 45 45 H 1.09002 * 109.47401 * 59.99789 * 25 24 23 46 46 H 1.09001 * 109.46874 * 299.99802 * 25 24 23 47 47 H 1.09004 * 109.46970 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.46425 * 58.27678 * 26 24 23 49 49 H 1.09008 * 109.45740 * 178.24323 * 26 24 23 50 50 H 1.09000 * 109.50747 * 299.24167 * 27 26 24 51 51 H 1.08999 * 109.53552 * 179.14132 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8584 1.1613 -2.4117 7 7 2.5960 -0.6539 -3.4575 8 6 2.9853 -2.0699 -3.5305 9 6 3.4028 -2.3556 -4.9886 10 6 2.6956 -1.2257 -5.7825 11 8 1.3344 -1.5655 -6.0547 12 6 3.4368 -0.9145 -7.0572 13 1 4.2759 -1.5250 -7.3567 14 6 3.0438 0.1495 -7.8411 15 7 2.0217 0.8926 -7.4767 16 14 3.9630 0.5356 -9.4208 17 1 3.8867 -0.6316 -10.3358 18 1 3.3476 1.7180 -10.0753 19 1 5.3850 0.8268 -9.1075 20 6 2.7834 -0.0431 -4.7861 21 6 2.0399 -0.7211 1.2493 22 6 1.5301 -0.0002 2.5003 23 6 1.9924 -0.7606 3.7453 24 7 1.4723 -2.1332 3.7035 25 6 1.7797 -2.8509 4.9478 26 6 1.9862 -2.8603 2.5358 27 6 1.5236 -2.1627 1.2546 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6319 -1.1525 32 1 3.8229 -2.2591 -2.8591 33 1 2.1395 -2.7014 -3.2586 34 1 3.0459 -3.3342 -5.3096 35 1 4.4850 -2.2839 -5.0970 36 1 0.8249 -0.8520 -6.4628 37 1 1.7450 1.6408 -8.0283 38 1 1.9933 0.6807 -4.9858 39 1 3.7605 0.4359 -4.8489 40 1 3.1299 -0.7246 1.2496 41 1 0.4410 0.0373 2.4803 42 1 1.9294 1.0138 2.5240 43 1 1.6191 -0.2577 4.6375 44 1 3.0818 -0.7856 3.7719 45 1 1.3240 -2.3299 5.7899 46 1 2.8601 -2.8906 5.0868 47 1 1.3829 -3.8645 4.8902 48 1 3.0755 -2.8757 2.5680 49 1 1.6081 -3.8827 2.5494 50 1 0.4344 -2.1592 1.2149 51 1 1.9176 -2.6935 0.3879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591961263.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:12 Heat of formation + Delta-G solvation = -102.078569 kcal Electronic energy + Delta-G solvation = -29203.008013 eV Core-core repulsion = 25328.875577 eV Total energy + Delta-G solvation = -3874.132436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45312 -40.27744 -39.05479 -37.03475 -36.01762 -34.22147 -33.92663 -31.86645 -31.80354 -30.53063 -29.44890 -27.47764 -26.93856 -24.92811 -24.34233 -23.86104 -22.14428 -21.44777 -20.88184 -20.09642 -19.23741 -18.80352 -17.39294 -16.95526 -16.72278 -16.60941 -16.29940 -16.05009 -15.92758 -15.48613 -15.42368 -15.08534 -14.76665 -14.61914 -14.38999 -14.14650 -13.80611 -13.56623 -13.51058 -13.34812 -13.31075 -13.16683 -12.80456 -12.76371 -12.51954 -12.49550 -12.42185 -12.31711 -12.25749 -12.07988 -11.83894 -11.61447 -11.37017 -11.23021 -11.14848 -11.10372 -10.65011 -10.31615 -10.14458 -9.30985 -9.23661 -8.23191 -6.40721 1.43870 1.44124 1.52603 1.71772 2.19860 2.39039 3.02490 3.03924 3.11580 3.64069 3.77840 3.80756 3.88513 4.09316 4.18865 4.22288 4.25850 4.34313 4.38577 4.41103 4.45083 4.60061 4.62865 4.64184 4.66067 4.74624 4.77997 4.80694 4.91622 4.93983 4.99944 5.06379 5.07289 5.08090 5.11531 5.17987 5.23284 5.28539 5.33361 5.40654 5.47834 5.55302 5.64546 5.76970 6.06931 6.17399 6.18165 6.22414 6.66585 7.10687 7.28603 7.35954 7.62531 8.81703 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029852 B = 0.002533 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.738109 B =11049.591629 C =11468.218474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 H 0.061 0.939 4 N -0.725 5.725 5 C 0.710 3.290 6 O -0.645 6.645 7 N -0.635 5.635 8 C 0.107 3.893 9 C -0.110 4.110 10 C 0.232 3.768 11 O -0.587 6.587 12 C -0.556 4.556 13 H 0.070 0.930 14 C 0.025 3.975 15 N -0.916 5.916 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.287 1.287 19 H -0.270 1.270 20 C 0.129 3.871 21 C -0.083 4.083 22 C -0.110 4.110 23 C 0.059 3.941 24 N -0.555 5.555 25 C 0.025 3.975 26 C 0.058 3.942 27 C -0.113 4.113 28 H 0.085 0.915 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.405 0.595 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.372 0.628 37 H 0.268 0.732 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.073 0.927 48 H 0.032 0.968 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -8.761 23.145 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.079 0.921 4 N -0.382 5.382 5 C 0.412 3.588 6 O -0.527 6.527 7 N -0.372 5.372 8 C -0.015 4.015 9 C -0.148 4.148 10 C 0.192 3.808 11 O -0.394 6.394 12 C -0.594 4.594 13 H 0.088 0.912 14 C -0.176 4.176 15 N -0.555 5.555 16 Si 0.789 3.211 17 H -0.194 1.194 18 H -0.213 1.213 19 H -0.195 1.195 20 C 0.005 3.995 21 C -0.102 4.102 22 C -0.148 4.148 23 C -0.069 4.069 24 N -0.280 5.280 25 C -0.123 4.123 26 C -0.069 4.069 27 C -0.151 4.151 28 H 0.104 0.896 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.242 0.758 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.220 0.780 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.101 0.899 50 H 0.094 0.906 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.390 -8.286 23.367 24.795 hybrid contribution 1.063 0.914 -1.432 2.004 sum 1.453 -7.372 21.934 23.185 Atomic orbital electron populations 1.22239 0.95255 1.02639 1.01578 1.20816 0.94177 0.96022 0.82794 0.92059 1.45119 1.71379 1.13890 1.07769 1.15780 0.78186 0.84242 0.80616 1.90835 1.59915 1.16806 1.85170 1.47882 1.67789 1.12324 1.09167 1.22105 1.00082 0.80855 0.98417 1.22590 1.00534 0.99173 0.92500 1.19860 0.80350 0.89613 0.90986 1.86091 1.25033 1.44376 1.83945 1.21771 1.16272 1.14058 1.07314 0.91231 1.25853 0.95536 0.95152 1.01094 1.69848 1.27188 1.18813 1.39622 0.85513 0.78803 0.77557 0.79186 1.19376 1.21260 1.19452 1.22623 0.98530 0.98080 0.80247 1.21367 1.00221 0.95786 0.92820 1.21661 1.02287 0.98523 0.92306 1.22073 0.97084 0.89044 0.98688 1.61945 1.60073 1.02729 1.03240 1.22384 0.98961 0.99443 0.91534 1.22075 0.97180 0.97841 0.89841 1.21706 1.02183 0.94117 0.97088 0.89619 0.95626 0.91096 0.75769 0.89311 0.90950 0.89577 0.89315 0.77954 0.92235 0.93958 0.94489 0.90995 0.90296 0.90834 0.89727 0.95057 0.90760 0.95656 0.90811 0.94952 0.89868 0.90552 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 8.78 71.98 0.63 -3.26 16 2 C 0.17 4.19 2.41 44.99 0.11 4.30 16 3 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 4 N -0.72 -21.17 4.96 -457.82 -2.27 -23.44 16 5 C 0.71 29.40 8.45 179.05 1.51 30.91 16 6 O -0.64 -32.82 16.26 -3.95 -0.06 -32.88 16 7 N -0.64 -26.50 3.33 -829.79 -2.76 -29.26 16 8 C 0.11 3.48 6.15 86.73 0.53 4.01 16 9 C -0.11 -4.13 6.13 31.78 0.19 -3.94 16 10 C 0.23 11.32 0.87 -10.15 -0.01 11.31 16 11 O -0.59 -30.45 13.16 -148.98 -1.96 -32.41 16 12 C -0.56 -29.08 8.27 25.60 0.21 -28.87 16 13 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 14 C 0.02 1.30 5.29 84.65 0.45 1.75 16 15 N -0.92 -50.94 10.69 21.45 0.23 -50.71 16 16 Si 0.96 42.17 29.54 68.60 2.03 44.19 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 C 0.13 6.51 5.38 86.85 0.47 6.98 16 21 C -0.08 -1.45 2.25 -10.71 -0.02 -1.47 16 22 C -0.11 -1.66 5.09 30.65 0.16 -1.51 16 23 C 0.06 0.80 5.46 86.33 0.47 1.27 16 24 N -0.55 -7.83 4.91 -922.58 -4.53 -12.36 16 25 C 0.02 0.27 9.59 127.69 1.22 1.49 16 26 C 0.06 0.79 5.46 86.33 0.47 1.27 16 27 C -0.11 -1.71 4.87 30.65 0.15 -1.56 16 28 H 0.09 1.71 6.38 -2.39 -0.02 1.69 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.55 6.37 -2.39 -0.02 1.53 16 31 H 0.41 9.44 5.92 -92.71 -0.55 8.89 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.09 3.09 8.03 -2.38 -0.02 3.07 16 36 H 0.37 20.39 7.56 -74.06 -0.56 19.83 16 37 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.04 2.47 7.33 -2.39 -0.02 2.45 16 39 H 0.04 1.95 8.03 -2.39 -0.02 1.93 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.23 6.31 -2.39 -0.02 1.22 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 0.99 8.12 -2.38 -0.02 0.97 16 44 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 48 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 50 H 0.08 1.25 6.31 -2.39 -0.02 1.24 16 51 H 0.07 1.00 6.61 -2.39 -0.02 0.99 16 Total: -1.00 -67.91 386.88 -2.96 -70.87 By element: Atomic # 1 Polarization: 43.51 SS G_CDS: -0.18 Total: 43.32 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 6.55 Total: 22.67 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -9.33 Total: -115.77 kcal Atomic # 8 Polarization: -63.27 SS G_CDS: -2.02 Total: -65.29 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -67.91 -2.96 -70.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591961263.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.205 kcal (2) G-P(sol) polarization free energy of solvation -67.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds