Wall clock time and date at job start Fri Apr 10 2020 18:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 N 1.46898 * 109.46897 * 180.02562 * 3 2 1 5 5 C 1.46846 * 111.00375 * 189.99790 * 4 3 2 6 6 C 1.53037 * 109.52930 * 185.83975 * 5 4 3 7 7 C 1.53111 * 109.27659 * 300.82068 * 6 5 4 8 8 N 1.46499 * 109.52636 * 177.55826 * 7 6 5 9 9 C 1.34770 * 120.00278 * 154.99557 * 8 7 6 10 10 O 1.21586 * 120.00020 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99924 * 179.97438 * 9 8 7 12 12 C 1.47419 * 125.64850 * 359.97438 * 11 9 8 13 13 C 1.54905 * 104.83258 * 155.91019 * 12 11 9 14 14 C 1.55153 * 101.58432 * 37.00633 * 13 12 11 15 15 O 1.42899 * 110.72123 * 83.04292 * 14 13 12 16 16 C 1.50702 * 110.72079 * 206.13591 * 14 13 12 17 17 H 1.08002 * 120.00299 * 357.56389 * 16 14 13 18 18 C 1.37884 * 119.99942 * 177.27948 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.47319 * 125.61416 * 180.20438 * 11 9 8 25 25 C 1.53126 * 109.16444 * 57.65206 * 7 6 5 26 26 C 1.46841 * 111.00262 * 314.20705 * 4 3 2 27 27 H 1.08992 * 109.47026 * 60.00073 * 1 2 3 28 28 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46921 * 300.00324 * 1 2 3 30 30 H 1.08994 * 109.46930 * 240.00247 * 2 1 3 31 31 H 1.09001 * 109.47146 * 119.99720 * 2 1 3 32 32 H 1.08995 * 109.47716 * 60.00409 * 3 2 1 33 33 H 1.09001 * 109.47058 * 299.99774 * 3 2 1 34 34 H 1.08994 * 109.46138 * 65.81741 * 5 4 3 35 35 H 1.09009 * 109.45977 * 305.85720 * 5 4 3 36 36 H 1.09002 * 109.50351 * 180.87992 * 6 5 4 37 37 H 1.09002 * 109.50097 * 60.75764 * 6 5 4 38 38 H 1.09004 * 109.52356 * 297.68975 * 7 6 5 39 39 H 0.97003 * 119.99773 * 334.99885 * 8 7 6 40 40 H 1.08994 * 110.36742 * 37.06455 * 12 11 9 41 41 H 1.09008 * 110.36374 * 274.74316 * 12 11 9 42 42 H 1.09004 * 111.00291 * 278.93328 * 13 12 11 43 43 H 1.09005 * 111.00807 * 155.08431 * 13 12 11 44 44 H 0.96699 * 114.00083 * 182.43988 * 15 14 13 45 45 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 46 46 H 1.09004 * 110.06766 * 61.67566 * 24 11 9 47 47 H 1.08999 * 109.85130 * 300.41923 * 24 11 9 48 48 H 1.09004 * 109.50079 * 62.28444 * 25 7 6 49 49 H 1.08998 * 109.50496 * 182.40421 * 25 7 6 50 50 H 1.09001 * 109.45989 * 294.17823 * 26 4 3 51 51 H 1.09004 * 109.46508 * 54.14508 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.7926 0.2374 6 6 5.5582 2.7820 0.0858 7 6 6.1592 1.7953 1.0905 8 7 7.6120 1.7374 0.9107 9 6 8.4038 1.3681 1.9368 10 8 7.9125 1.0825 3.0117 11 7 9.7404 1.3144 1.7712 12 6 10.4654 1.6311 0.5273 13 6 11.8915 2.0225 0.9882 14 6 12.1190 1.0390 2.1664 15 8 12.5612 -0.2321 1.6859 16 6 13.1073 1.6072 3.1521 17 1 13.5765 2.5604 2.9578 18 6 13.4080 0.9130 4.3049 19 7 12.8366 -0.2476 4.5414 20 14 14.6272 1.6211 5.5303 21 1 13.9040 2.4594 6.5200 22 1 15.3219 0.5131 6.2338 23 1 15.6248 2.4536 4.8114 24 6 10.7176 0.9247 2.8024 25 6 5.5585 0.4070 0.8524 26 6 4.0357 0.4866 0.9817 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.7729 3.1122 1.2458 35 1 3.6031 3.4837 -0.4864 36 1 5.9499 3.7809 0.2779 37 1 5.8209 2.4758 -0.9268 38 1 5.9304 2.1231 2.1045 39 1 8.0040 1.9649 0.0531 40 1 9.9901 2.4665 0.0134 41 1 10.5034 0.7568 -0.1227 42 1 11.9212 3.0567 1.3313 43 1 12.6187 1.8551 0.1936 44 1 12.6822 -0.8946 2.3798 45 1 13.0485 -0.7362 5.3523 46 1 10.5370 -0.1023 3.1198 47 1 10.6423 1.5974 3.6567 48 1 5.8213 0.0635 -0.1481 49 1 5.9506 -0.2909 1.5922 50 1 3.7732 0.8170 1.9867 51 1 3.6038 -0.4974 0.7987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591968050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:18 Heat of formation + Delta-G solvation = -81.759143 kcal Electronic energy + Delta-G solvation = -28683.231549 eV Core-core repulsion = 24809.980229 eV Total energy + Delta-G solvation = -3873.251320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.04794 -39.04756 -37.39320 -35.60694 -34.23907 -33.44090 -32.17955 -31.11540 -30.89056 -29.66467 -27.76560 -26.22443 -24.91508 -23.81586 -23.17516 -22.29619 -20.97477 -20.05551 -19.64076 -19.28199 -17.54787 -17.04898 -16.54892 -15.79327 -15.63888 -15.20334 -15.07998 -14.95103 -14.45789 -14.35483 -13.97492 -13.84990 -13.75782 -13.13674 -13.02953 -12.87457 -12.82111 -12.54684 -12.46083 -12.11911 -11.84630 -11.65195 -11.55504 -11.44362 -11.39214 -11.20798 -11.06650 -11.04096 -10.78643 -10.64843 -10.61618 -10.51666 -10.49192 -10.14988 -9.56445 -9.30957 -8.77954 -8.65997 -8.53550 -8.29618 -7.73710 -6.27077 -4.35420 3.12972 3.22870 3.29788 3.32530 3.63275 3.76613 4.27469 4.42834 4.51953 4.63208 4.69512 4.81143 4.94322 4.99964 5.00954 5.09029 5.20758 5.23982 5.35199 5.39302 5.40385 5.43100 5.50515 5.53907 5.63777 5.69787 5.71963 5.80393 5.82213 5.86040 5.92235 5.95653 6.03079 6.06154 6.16624 6.29680 6.52734 6.74387 6.82359 6.86894 6.87751 6.90593 7.01271 7.28320 7.34718 7.67433 7.75174 8.04710 8.56588 8.68481 9.16797 9.32315 9.42091 10.80763 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.002303 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.964169 B =12154.587850 C =12420.057206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.056 3.944 4 N -0.540 5.540 5 C 0.061 3.939 6 C -0.123 4.123 7 C 0.165 3.835 8 N -0.747 5.747 9 C 0.716 3.284 10 O -0.598 6.598 11 N -0.631 5.631 12 C 0.104 3.896 13 C -0.116 4.116 14 C 0.247 3.753 15 O -0.586 6.586 16 C -0.537 4.537 17 H 0.066 0.934 18 C 0.070 3.930 19 N -0.894 5.894 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.123 3.877 25 C -0.127 4.127 26 C 0.053 3.947 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.392 0.608 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.270 0.730 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.035 0.965 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.179 3.784 -11.098 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.067 4.067 6 C -0.161 4.161 7 C 0.059 3.941 8 N -0.403 5.403 9 C 0.418 3.582 10 O -0.477 6.477 11 N -0.368 5.368 12 C -0.019 4.019 13 C -0.154 4.154 14 C 0.207 3.793 15 O -0.395 6.395 16 C -0.575 4.575 17 H 0.084 0.916 18 C -0.133 4.133 19 N -0.533 5.533 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.001 3.999 25 C -0.167 4.167 26 C -0.075 4.075 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.226 0.774 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.235 0.765 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.053 0.947 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.466 3.583 -11.161 22.723 hybrid contribution 0.531 0.391 1.686 1.811 sum -18.935 3.974 -9.475 21.543 Atomic orbital electron populations 1.21735 0.95569 1.01818 1.01748 1.21713 0.95691 0.96527 1.02879 1.22150 0.87150 0.97208 1.00698 1.62042 1.07082 1.07124 1.50236 1.21999 0.94733 0.90083 0.99917 1.21859 0.94612 0.99483 1.00169 1.20732 0.78739 0.94824 0.99763 1.45198 1.06079 1.75016 1.14019 1.15539 0.80311 0.78555 0.83835 1.90874 1.73654 1.57239 1.25949 1.48043 1.03592 1.70284 1.14904 1.22219 0.93789 0.98721 0.87211 1.22721 0.93742 0.99622 0.99295 1.19500 0.88777 0.81832 0.89201 1.86085 1.89736 1.23821 1.39851 1.21510 1.25261 1.06450 1.04320 0.91557 1.25081 0.95720 0.94763 0.97770 1.69650 1.42716 1.13632 1.27311 0.86397 0.80919 0.78746 0.80811 1.20441 1.20995 1.19707 1.22913 0.87645 0.99949 0.89405 1.22026 0.93811 0.97981 1.02854 1.22191 0.95275 0.96880 0.93181 0.92660 0.92515 0.92866 0.91013 0.91506 0.94962 0.90760 0.94600 0.90420 0.90830 0.90540 0.89980 0.77390 0.92658 0.92049 0.90584 0.90605 0.76505 0.91973 0.91960 0.91868 0.91077 0.90700 0.94722 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.13 -0.94 5.18 -26.73 -0.14 -1.08 16 3 C 0.06 0.44 5.27 -3.82 -0.02 0.42 16 4 N -0.54 -5.12 4.81 -234.67 -1.13 -6.25 16 5 C 0.06 0.55 5.42 -3.83 -0.02 0.53 16 6 C -0.12 -1.20 5.57 -26.65 -0.15 -1.35 16 7 C 0.17 2.16 2.52 -67.81 -0.17 1.99 16 8 N -0.75 -11.24 5.04 -58.56 -0.30 -11.53 16 9 C 0.72 14.55 8.46 -86.92 -0.74 13.81 16 10 O -0.60 -14.48 16.33 5.29 0.09 -14.40 16 11 N -0.63 -13.16 3.33 -176.00 -0.59 -13.74 16 12 C 0.10 1.81 6.57 -2.53 -0.02 1.80 16 13 C -0.12 -2.29 6.23 -24.59 -0.15 -2.44 16 14 C 0.25 6.00 0.85 -89.94 -0.08 5.92 16 15 O -0.59 -14.78 13.08 -35.23 -0.46 -15.25 16 16 C -0.54 -14.07 8.11 -34.44 -0.28 -14.35 16 17 H 0.07 1.70 7.77 -52.49 -0.41 1.30 16 18 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 19 N -0.89 -23.97 10.96 55.43 0.61 -23.36 16 20 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.12 3.02 5.39 -2.90 -0.02 3.01 16 25 C -0.13 -1.60 5.67 -26.65 -0.15 -1.76 16 26 C 0.05 0.56 4.85 -3.84 -0.02 0.54 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.51 6.21 -51.93 -0.32 0.19 16 32 H 0.03 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.59 8.12 -51.92 -0.42 0.17 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.27 7.58 -51.93 -0.39 0.87 16 39 H 0.39 4.96 7.08 -40.82 -0.29 4.67 16 40 H 0.06 0.77 7.30 -51.93 -0.38 0.39 16 41 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 42 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 43 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.38 9.98 7.24 45.56 0.33 10.31 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.06 1.68 8.00 -51.93 -0.42 1.26 16 47 H 0.06 1.70 7.81 -51.93 -0.41 1.29 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 50 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.08 0.80 5.81 -51.93 -0.30 0.50 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -29.95 392.89 -11.02 -40.98 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -8.47 Total: 13.85 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -1.67 Total: 8.25 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -1.40 Total: -54.89 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.37 Total: -29.64 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.95 -11.02 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591968050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.783 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds