Wall clock time and date at job start Fri Apr 10 2020 18:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47297 * 2 1 4 4 H 1.09000 * 109.47225 * 54.99874 * 3 2 1 5 5 C 1.52996 * 109.46933 * 175.00095 * 3 2 1 6 6 N 1.46908 * 109.46972 * 174.99802 * 5 3 2 7 7 C 1.48533 * 110.99996 * 52.59902 * 6 5 3 8 8 C 1.54936 * 103.22848 * 159.72177 * 7 6 5 9 9 C 1.54601 * 102.91725 * 322.58818 * 8 7 6 10 10 C 1.47900 * 110.99919 * 169.99847 * 6 5 3 11 11 N 1.46497 * 109.46568 * 295.00079 * 3 2 1 12 12 C 1.34776 * 120.00365 * 85.00120 * 11 3 2 13 13 O 1.21587 * 119.99916 * 0.02562 * 12 11 3 14 14 N 1.34772 * 120.00125 * 179.71924 * 12 11 3 15 15 C 1.47432 * 125.64754 * 359.96732 * 14 12 11 16 16 C 1.55138 * 104.71922 * 155.81631 * 15 14 12 17 17 C 1.55153 * 101.48593 * 37.29696 * 16 15 14 18 18 O 1.42903 * 110.72008 * 82.69665 * 17 16 15 19 19 C 1.50700 * 110.87145 * 205.89550 * 17 16 15 20 20 H 1.08005 * 119.99933 * 118.66926 * 19 17 16 21 21 C 1.37877 * 120.00183 * 298.67646 * 19 17 16 22 22 N 1.31510 * 120.00157 * 183.38902 * 21 19 17 23 23 Si 1.86796 * 119.99842 * 3.38246 * 21 19 17 24 24 H 1.48505 * 109.47183 * 84.83938 * 23 21 19 25 25 H 1.48496 * 109.47107 * 204.83712 * 23 21 19 26 26 H 1.48501 * 109.47322 * 324.83896 * 23 21 19 27 27 C 1.47023 * 125.65054 * 180.27788 * 14 12 11 28 28 H 1.08999 * 109.47493 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47114 * 300.00384 * 1 2 3 30 30 H 1.08998 * 109.47410 * 60.00202 * 1 2 3 31 31 H 1.09000 * 109.47114 * 239.99616 * 2 1 3 32 32 H 1.09001 * 109.46969 * 119.99533 * 2 1 3 33 33 H 1.08997 * 109.47167 * 294.99648 * 5 3 2 34 34 H 1.08993 * 109.47450 * 54.99611 * 5 3 2 35 35 H 1.09001 * 110.67167 * 278.16314 * 7 6 5 36 36 H 1.09008 * 110.66639 * 41.28978 * 7 6 5 37 37 H 1.08997 * 110.72639 * 204.23402 * 8 7 6 38 38 H 1.08998 * 110.72447 * 80.94479 * 8 7 6 39 39 H 1.09002 * 110.30701 * 263.03441 * 9 8 7 40 40 H 1.09004 * 110.30262 * 140.87440 * 9 8 7 41 41 H 1.08998 * 109.91711 * 333.50819 * 10 6 5 42 42 H 1.08996 * 109.91401 * 94.80257 * 10 6 5 43 43 H 0.97005 * 120.00152 * 264.99584 * 11 3 2 44 44 H 1.08992 * 110.36956 * 274.74284 * 15 14 12 45 45 H 1.09001 * 110.36358 * 37.07584 * 15 14 12 46 46 H 1.09004 * 111.18918 * 279.19277 * 16 15 14 47 47 H 1.09002 * 110.90060 * 155.27952 * 16 15 14 48 48 H 0.96692 * 113.99762 * 185.02513 * 18 17 16 49 49 H 0.97003 * 120.00526 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.88046 * 300.43992 * 27 14 12 51 51 H 1.08996 * 109.88520 * 61.44730 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4442 0.1257 6 7 4.0645 2.8205 0.0055 7 6 3.3665 3.7250 0.9547 8 6 4.3336 4.9297 1.0727 9 6 5.7264 4.2597 1.0359 10 6 5.4991 2.8961 0.3574 11 7 1.6524 2.0974 -1.2518 12 6 0.4352 2.6643 -1.3670 13 8 -0.3412 2.6326 -0.4318 14 7 0.0807 3.2717 -2.5167 15 6 0.9226 3.3893 -3.7213 16 6 -0.0829 3.5706 -4.8888 17 6 -1.1694 4.4577 -4.2258 18 8 -0.7857 5.8340 -4.2552 19 6 -2.5043 4.2641 -4.8978 20 1 -3.3432 3.8845 -4.3332 21 6 -2.6547 4.5713 -6.2335 22 7 -3.8351 4.4657 -6.8037 23 14 -1.1819 5.1375 -7.2332 24 1 -0.4376 3.9533 -7.7323 25 1 -1.6485 5.9504 -8.3851 26 1 -0.2888 5.9589 -6.3772 27 6 -1.2070 3.9323 -2.7752 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8499 1.0376 1.0960 34 1 3.9954 0.8310 -0.6658 35 1 2.4056 4.0413 0.5488 36 1 3.2357 3.2404 1.9223 37 1 4.1828 5.4544 2.0162 38 1 4.2095 5.6081 0.2287 39 1 6.1058 4.1200 2.0482 40 1 6.4207 4.8625 0.4506 41 1 5.7554 2.0912 1.0462 42 1 6.1068 2.8243 -0.5446 43 1 2.2719 2.1230 -1.9978 44 1 1.5773 4.2572 -3.6433 45 1 1.5094 2.4819 -3.8641 46 1 -0.4985 2.6131 -5.2030 47 1 0.3843 4.0863 -5.7278 48 1 -1.3933 6.4218 -3.7859 49 1 -3.9411 4.6822 -7.7433 50 1 -2.0206 3.2158 -2.6615 51 1 -1.3441 4.7617 -2.0815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591986333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:33 Heat of formation + Delta-G solvation = -61.784981 kcal Electronic energy + Delta-G solvation = -29825.076911 eV Core-core repulsion = 25952.691735 eV Total energy + Delta-G solvation = -3872.385175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.22973 -39.12579 -37.81713 -35.81874 -34.45153 -32.41724 -32.13652 -32.05429 -29.96679 -29.14017 -28.32201 -27.57334 -25.07991 -23.51992 -22.58954 -21.65689 -20.99205 -20.52612 -19.81577 -19.49550 -17.81889 -17.29592 -16.35968 -16.20734 -16.13626 -15.44740 -14.91994 -14.80129 -14.52387 -14.28256 -13.95721 -13.82614 -13.56454 -13.19880 -13.06270 -12.90195 -12.77831 -12.56025 -12.33357 -12.22101 -12.07101 -11.66992 -11.61092 -11.47978 -11.41515 -11.30766 -11.17911 -11.07751 -10.89543 -10.80140 -10.72271 -10.52968 -10.26520 -10.04481 -9.60123 -8.99945 -8.76943 -8.71913 -8.66663 -8.47196 -7.94001 -6.19696 -4.31342 3.01305 3.30130 3.42526 3.61142 3.62248 3.72713 4.31684 4.35191 4.43169 4.44008 4.67142 4.74357 4.96411 5.02062 5.10056 5.12749 5.18561 5.20811 5.25914 5.34928 5.38921 5.41163 5.49323 5.53445 5.59586 5.66978 5.75658 5.76602 5.81963 5.88213 5.92957 5.93910 5.96839 6.05260 6.15351 6.25038 6.51933 6.60360 6.62854 6.63781 6.68625 6.70399 6.73447 6.87635 7.16890 7.44008 7.57961 8.21484 8.43068 8.76307 8.92544 9.04211 9.43537 10.90821 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.003499 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.427088 B = 8000.063377 C = 8925.013383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.166 3.834 4 H 0.086 0.914 5 C 0.038 3.962 6 N -0.511 5.511 7 C 0.036 3.964 8 C -0.124 4.124 9 C -0.131 4.131 10 C 0.035 3.965 11 N -0.731 5.731 12 C 0.720 3.280 13 O -0.597 6.597 14 N -0.628 5.628 15 C 0.106 3.894 16 C -0.124 4.124 17 C 0.216 3.784 18 O -0.573 6.573 19 C -0.550 4.550 20 H 0.078 0.922 21 C 0.088 3.912 22 N -0.888 5.888 23 Si 0.876 3.124 24 H -0.283 1.283 25 H -0.301 1.301 26 H -0.228 1.228 27 C 0.117 3.883 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.397 0.603 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.365 0.635 49 H 0.267 0.733 50 H 0.070 0.930 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.271 -4.924 13.945 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.060 3.940 4 H 0.104 0.896 5 C -0.091 4.091 6 N -0.236 5.236 7 C -0.092 4.092 8 C -0.162 4.162 9 C -0.169 4.169 10 C -0.093 4.093 11 N -0.387 5.387 12 C 0.423 3.577 13 O -0.476 6.476 14 N -0.365 5.365 15 C -0.018 4.018 16 C -0.162 4.162 17 C 0.176 3.824 18 O -0.380 6.380 19 C -0.587 4.587 20 H 0.096 0.904 21 C -0.117 4.117 22 N -0.524 5.524 23 Si 0.704 3.296 24 H -0.210 1.210 25 H -0.228 1.228 26 H -0.151 1.151 27 C -0.006 4.006 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.232 0.768 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.212 0.788 49 H 0.076 0.924 50 H 0.088 0.912 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.024 -5.055 13.677 23.970 hybrid contribution 0.611 0.042 0.066 0.616 sum 19.635 -5.012 13.743 24.485 Atomic orbital electron populations 1.21754 0.94279 1.00170 1.03707 1.21951 0.97740 0.95894 1.01630 1.20841 0.92242 0.93126 0.87786 0.89587 1.22648 0.94863 0.90539 1.01084 1.64791 1.02584 1.06988 1.49193 1.23244 0.98652 0.93094 0.94205 1.22480 0.93995 0.97540 1.02218 1.22394 0.97955 0.96100 1.00436 1.22884 0.90149 0.96812 0.99431 1.44947 1.15806 1.61289 1.16635 1.15393 0.82047 0.78195 0.82111 1.90886 1.52310 1.65970 1.38453 1.47660 1.18268 1.58322 1.12274 1.22297 0.94002 1.00011 0.85452 1.23097 0.95913 1.00972 0.96262 1.19980 0.93355 0.79753 0.89330 1.86494 1.54330 1.18805 1.78333 1.21205 0.94884 1.46796 0.95844 0.90361 1.24950 0.95937 0.93101 0.97682 1.69929 1.22967 1.46950 1.12564 0.87064 0.83913 0.79523 0.79083 1.21021 1.22828 1.15081 1.22606 0.83570 0.96310 0.98107 0.94008 0.92328 0.91759 0.91961 0.91754 0.93336 0.90059 0.89520 0.93920 0.91173 0.90617 0.91723 0.91041 0.93932 0.90354 0.76833 0.91750 0.92265 0.89472 0.90859 0.78804 0.92370 0.91181 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.51 37.16 0.32 -1.63 16 2 C -0.13 -1.43 5.61 -26.73 -0.15 -1.58 16 3 C 0.17 1.89 1.75 -67.93 -0.12 1.77 16 4 H 0.09 1.15 6.52 -51.93 -0.34 0.81 16 5 C 0.04 0.33 4.59 -3.82 -0.02 0.32 16 6 N -0.51 -4.99 5.12 -230.46 -1.18 -6.17 16 7 C 0.04 0.37 5.13 -1.90 -0.01 0.36 16 8 C -0.12 -1.10 7.06 -24.87 -0.18 -1.28 16 9 C -0.13 -0.98 6.93 -25.37 -0.18 -1.15 16 10 C 0.04 0.28 6.70 -2.76 -0.02 0.26 16 11 N -0.73 -9.78 4.71 -58.68 -0.28 -10.06 16 12 C 0.72 12.64 7.06 -86.92 -0.61 12.02 16 13 O -0.60 -12.14 13.81 5.29 0.07 -12.07 16 14 N -0.63 -11.55 3.32 -176.09 -0.59 -12.14 16 15 C 0.11 1.77 6.58 -2.40 -0.02 1.75 16 16 C -0.12 -2.51 4.83 -24.46 -0.12 -2.63 16 17 C 0.22 4.80 0.67 -89.94 -0.06 4.74 16 18 O -0.57 -12.39 10.44 -35.23 -0.37 -12.76 16 19 C -0.55 -14.66 8.82 -34.44 -0.30 -14.97 16 20 H 0.08 2.29 7.82 -52.48 -0.41 1.88 16 21 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 22 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 23 Si 0.88 21.06 23.89 -169.99 -4.06 17.00 16 24 H -0.28 -6.60 7.08 56.52 0.40 -6.20 16 25 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.23 -5.34 5.50 56.52 0.31 -5.03 16 27 C 0.12 2.44 6.21 -3.06 -0.02 2.42 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 30 H 0.06 1.08 5.65 -51.93 -0.29 0.79 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.38 7.81 -51.93 -0.41 -0.02 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.13 7.76 -51.93 -0.40 0.73 16 36 H 0.04 0.42 8.00 -51.92 -0.42 0.01 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.04 0.31 7.57 -51.93 -0.39 -0.09 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.40 4.88 7.08 -40.82 -0.29 4.59 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.82 7.29 -51.93 -0.38 0.44 16 46 H 0.09 1.80 8.05 -51.93 -0.42 1.38 16 47 H 0.07 1.50 5.00 -51.93 -0.26 1.24 16 48 H 0.36 6.93 9.08 45.56 0.41 7.34 16 49 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.07 1.57 7.66 -51.93 -0.40 1.18 16 51 H 0.05 1.11 8.06 -51.93 -0.42 0.70 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -31.16 381.76 -9.72 -40.87 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -8.27 Total: 12.36 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.58 Total: 2.75 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -1.27 Total: -53.91 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.29 Total: -24.83 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.06 Total: 17.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.16 -9.72 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591986333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.910 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds