Wall clock time and date at job start Fri Apr 10 2020 18:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47297 * 2 1 4 4 H 1.09000 * 109.47225 * 54.99874 * 3 2 1 5 5 C 1.52996 * 109.46933 * 175.00095 * 3 2 1 6 6 N 1.46908 * 109.46972 * 174.99802 * 5 3 2 7 7 C 1.48533 * 110.99996 * 52.59902 * 6 5 3 8 8 C 1.54936 * 103.22848 * 159.72177 * 7 6 5 9 9 C 1.54601 * 102.91725 * 322.58818 * 8 7 6 10 10 C 1.47900 * 110.99919 * 169.99847 * 6 5 3 11 11 N 1.46497 * 109.46568 * 295.00079 * 3 2 1 12 12 C 1.34776 * 120.00365 * 85.00120 * 11 3 2 13 13 O 1.21587 * 119.99916 * 0.02562 * 12 11 3 14 14 N 1.34772 * 120.00125 * 179.71924 * 12 11 3 15 15 C 1.47432 * 125.64754 * 359.96732 * 14 12 11 16 16 C 1.55138 * 104.71922 * 155.81631 * 15 14 12 17 17 C 1.55153 * 101.48593 * 37.29696 * 16 15 14 18 18 O 1.42903 * 110.72008 * 82.69665 * 17 16 15 19 19 C 1.50700 * 110.87145 * 205.89550 * 17 16 15 20 20 H 1.08005 * 119.99933 * 118.66926 * 19 17 16 21 21 C 1.37877 * 120.00183 * 298.67646 * 19 17 16 22 22 N 1.31510 * 120.00157 * 183.38902 * 21 19 17 23 23 Si 1.86796 * 119.99842 * 3.38246 * 21 19 17 24 24 H 1.48505 * 109.47183 * 84.83938 * 23 21 19 25 25 H 1.48496 * 109.47107 * 204.83712 * 23 21 19 26 26 H 1.48501 * 109.47322 * 324.83896 * 23 21 19 27 27 C 1.47023 * 125.65054 * 180.27788 * 14 12 11 28 28 H 1.08999 * 109.47493 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47114 * 300.00384 * 1 2 3 30 30 H 1.08998 * 109.47410 * 60.00202 * 1 2 3 31 31 H 1.09000 * 109.47114 * 239.99616 * 2 1 3 32 32 H 1.09001 * 109.46969 * 119.99533 * 2 1 3 33 33 H 1.08997 * 109.47167 * 294.99648 * 5 3 2 34 34 H 1.08993 * 109.47450 * 54.99611 * 5 3 2 35 35 H 1.09001 * 110.67167 * 278.16314 * 7 6 5 36 36 H 1.09008 * 110.66639 * 41.28978 * 7 6 5 37 37 H 1.08997 * 110.72639 * 204.23402 * 8 7 6 38 38 H 1.08998 * 110.72447 * 80.94479 * 8 7 6 39 39 H 1.09002 * 110.30701 * 263.03441 * 9 8 7 40 40 H 1.09004 * 110.30262 * 140.87440 * 9 8 7 41 41 H 1.08998 * 109.91711 * 333.50819 * 10 6 5 42 42 H 1.08996 * 109.91401 * 94.80257 * 10 6 5 43 43 H 0.97005 * 120.00152 * 264.99584 * 11 3 2 44 44 H 1.08992 * 110.36956 * 274.74284 * 15 14 12 45 45 H 1.09001 * 110.36358 * 37.07584 * 15 14 12 46 46 H 1.09004 * 111.18918 * 279.19277 * 16 15 14 47 47 H 1.09002 * 110.90060 * 155.27952 * 16 15 14 48 48 H 0.96692 * 113.99762 * 185.02513 * 18 17 16 49 49 H 0.97003 * 120.00526 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.88046 * 300.43992 * 27 14 12 51 51 H 1.08996 * 109.88520 * 61.44730 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4442 0.1257 6 7 4.0645 2.8205 0.0055 7 6 3.3665 3.7250 0.9547 8 6 4.3336 4.9297 1.0727 9 6 5.7264 4.2597 1.0359 10 6 5.4991 2.8961 0.3574 11 7 1.6524 2.0974 -1.2518 12 6 0.4352 2.6643 -1.3670 13 8 -0.3412 2.6326 -0.4318 14 7 0.0807 3.2717 -2.5167 15 6 0.9226 3.3893 -3.7213 16 6 -0.0829 3.5706 -4.8888 17 6 -1.1694 4.4577 -4.2258 18 8 -0.7857 5.8340 -4.2552 19 6 -2.5043 4.2641 -4.8978 20 1 -3.3432 3.8845 -4.3332 21 6 -2.6547 4.5713 -6.2335 22 7 -3.8351 4.4657 -6.8037 23 14 -1.1819 5.1375 -7.2332 24 1 -0.4376 3.9533 -7.7323 25 1 -1.6485 5.9504 -8.3851 26 1 -0.2888 5.9589 -6.3772 27 6 -1.2070 3.9323 -2.7752 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8499 1.0376 1.0960 34 1 3.9954 0.8310 -0.6658 35 1 2.4056 4.0413 0.5488 36 1 3.2357 3.2404 1.9223 37 1 4.1828 5.4544 2.0162 38 1 4.2095 5.6081 0.2287 39 1 6.1058 4.1200 2.0482 40 1 6.4207 4.8625 0.4506 41 1 5.7554 2.0912 1.0462 42 1 6.1068 2.8243 -0.5446 43 1 2.2719 2.1230 -1.9978 44 1 1.5773 4.2572 -3.6433 45 1 1.5094 2.4819 -3.8641 46 1 -0.4985 2.6131 -5.2030 47 1 0.3843 4.0863 -5.7278 48 1 -1.3933 6.4218 -3.7859 49 1 -3.9411 4.6822 -7.7433 50 1 -2.0206 3.2158 -2.6615 51 1 -1.3441 4.7617 -2.0815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591986333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:32 Heat of formation + Delta-G solvation = -86.733261 kcal Electronic energy + Delta-G solvation = -29826.158749 eV Core-core repulsion = 25952.691735 eV Total energy + Delta-G solvation = -3873.467014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.50379 -40.12219 -39.21843 -36.94134 -36.07335 -34.50213 -33.33831 -32.86114 -31.53052 -29.98993 -29.78421 -28.58445 -26.88724 -24.41141 -24.11044 -22.53097 -21.80786 -21.60111 -21.17942 -20.88613 -19.55510 -18.84813 -17.48904 -17.16628 -16.96046 -16.86997 -16.58012 -16.44901 -15.87340 -15.26273 -15.08643 -15.03050 -14.76634 -14.58575 -14.40009 -14.30239 -14.01265 -13.87602 -13.51378 -13.40579 -13.18752 -13.09236 -12.95416 -12.84001 -12.45216 -12.36083 -12.30799 -12.15527 -12.12363 -11.98316 -11.83523 -11.78412 -11.62824 -11.43626 -11.09879 -10.94263 -10.78581 -10.34098 -10.00007 -9.38330 -9.35334 -8.35347 -6.51269 1.39045 1.47738 1.68960 1.71100 2.25932 2.41257 2.94836 3.00676 3.15789 3.56908 3.58913 3.77311 3.80911 3.96373 4.04791 4.09896 4.14283 4.21690 4.27087 4.34613 4.42529 4.45695 4.54559 4.58823 4.60858 4.65174 4.75538 4.81561 4.87083 4.92582 4.96200 4.97006 5.00981 5.03859 5.09045 5.10084 5.12318 5.19884 5.24156 5.32422 5.47116 5.49779 5.53271 5.68787 5.93950 6.07810 6.11144 6.20528 6.59589 7.11309 7.13371 7.30482 7.68623 8.79127 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.003499 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.427088 B = 8000.063377 C = 8925.013383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.166 3.834 4 H 0.062 0.938 5 C 0.045 3.955 6 N -0.524 5.524 7 C 0.038 3.962 8 C -0.124 4.124 9 C -0.126 4.126 10 C 0.035 3.965 11 N -0.712 5.712 12 C 0.718 3.282 13 O -0.630 6.630 14 N -0.633 5.633 15 C 0.116 3.884 16 C -0.127 4.127 17 C 0.219 3.781 18 O -0.572 6.572 19 C -0.553 4.553 20 H 0.033 0.967 21 C 0.036 3.964 22 N -0.938 5.938 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.308 1.308 26 H -0.213 1.213 27 C 0.128 3.872 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.407 0.593 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.375 0.625 49 H 0.268 0.732 50 H 0.040 0.960 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.778 -5.736 14.292 28.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.060 3.940 4 H 0.081 0.919 5 C -0.083 4.083 6 N -0.249 5.249 7 C -0.090 4.090 8 C -0.163 4.163 9 C -0.164 4.164 10 C -0.092 4.092 11 N -0.368 5.368 12 C 0.420 3.580 13 O -0.512 6.512 14 N -0.370 5.370 15 C -0.006 4.006 16 C -0.165 4.165 17 C 0.178 3.822 18 O -0.379 6.379 19 C -0.590 4.590 20 H 0.052 0.948 21 C -0.164 4.164 22 N -0.577 5.577 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.237 1.237 26 H -0.135 1.135 27 C 0.003 3.997 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.243 0.757 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.224 0.776 49 H 0.077 0.923 50 H 0.059 0.941 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.587 -5.888 14.044 28.076 hybrid contribution -0.910 0.278 0.071 0.954 sum 22.677 -5.610 14.115 27.294 Atomic orbital electron populations 1.21678 0.96838 1.00074 1.00973 1.21919 0.95198 0.95712 1.03648 1.20978 0.94219 0.92921 0.85856 0.91937 1.22616 0.92410 0.90560 1.02722 1.64769 1.03652 1.07224 1.49233 1.23104 0.97567 0.94080 0.94206 1.22467 0.94783 0.96939 1.02073 1.22390 0.96898 0.95815 1.01320 1.22933 0.88806 0.97384 1.00084 1.44844 1.14159 1.60043 1.17708 1.15538 0.82948 0.78146 0.81324 1.90865 1.53674 1.67110 1.39587 1.47600 1.17525 1.58582 1.13342 1.22334 0.92989 1.02452 0.82871 1.23039 0.95916 0.99885 0.97628 1.19785 0.92061 0.80493 0.89850 1.86438 1.54427 1.18401 1.78646 1.21433 0.95954 1.45786 0.95852 0.94849 1.25802 0.98578 0.93220 0.98830 1.70069 1.25444 1.49107 1.13049 0.86065 0.80578 0.79620 0.77180 1.19135 1.23666 1.13543 1.22224 0.84393 0.95646 0.97425 0.92735 0.94285 0.95247 0.90516 0.89010 0.91571 0.88276 0.92917 0.93651 0.90470 0.91898 0.90495 0.90438 0.92642 0.89768 0.75714 0.90483 0.88568 0.90329 0.90323 0.77608 0.92282 0.94109 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.51 71.98 0.61 -3.13 16 2 C -0.13 -2.39 5.61 30.59 0.17 -2.22 16 3 C 0.17 3.44 1.75 44.99 0.08 3.52 16 4 H 0.06 1.64 6.52 -2.39 -0.02 1.62 16 5 C 0.05 0.65 4.59 86.30 0.40 1.04 16 6 N -0.52 -8.74 5.12 -883.03 -4.52 -13.26 16 7 C 0.04 0.75 5.13 86.65 0.44 1.19 16 8 C -0.12 -2.02 7.06 31.80 0.22 -1.79 16 9 C -0.13 -1.52 6.93 31.47 0.22 -1.30 16 10 C 0.04 0.44 6.70 86.45 0.58 1.02 16 11 N -0.71 -17.84 4.71 -457.83 -2.16 -20.00 16 12 C 0.72 25.06 7.06 179.06 1.26 26.32 16 13 O -0.63 -26.48 13.81 -3.99 -0.06 -26.54 16 14 N -0.63 -22.94 3.32 -829.29 -2.76 -25.70 16 15 C 0.12 3.55 6.58 86.93 0.57 4.13 16 16 C -0.13 -4.88 4.83 32.07 0.15 -4.73 16 17 C 0.22 9.72 0.67 -10.35 -0.01 9.71 16 18 O -0.57 -23.99 10.44 -148.98 -1.56 -25.55 16 19 C -0.55 -30.53 8.82 25.60 0.23 -30.31 16 20 H 0.03 2.09 7.82 -2.91 -0.02 2.06 16 21 C 0.04 2.02 5.47 84.66 0.46 2.48 16 22 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 23 Si 0.94 43.18 23.89 68.60 1.64 44.82 16 24 H -0.27 -11.39 7.08 99.48 0.70 -10.68 16 25 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.21 -9.22 5.50 99.48 0.55 -8.67 16 27 C 0.13 5.45 6.21 86.73 0.54 5.99 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.18 7.84 -2.39 -0.02 1.16 16 30 H 0.03 0.99 5.65 -2.39 -0.01 0.97 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 0.76 7.81 -2.39 -0.02 0.74 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.38 7.76 -2.39 -0.02 1.37 16 36 H 0.05 0.84 8.00 -2.38 -0.02 0.82 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.06 0.56 7.57 -2.39 -0.02 0.54 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.41 8.70 7.08 -92.70 -0.66 8.05 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.10 2.28 7.29 -2.39 -0.02 2.26 16 46 H 0.08 3.15 8.05 -2.38 -0.02 3.13 16 47 H 0.08 2.96 5.00 -2.39 -0.01 2.95 16 48 H 0.38 14.04 9.08 -74.06 -0.67 13.37 16 49 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 50 H 0.04 1.95 7.66 -2.39 -0.02 1.93 16 51 H 0.05 2.19 8.06 -2.39 -0.02 2.18 16 Total: -1.00 -71.18 381.76 -3.74 -74.92 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.57 Total: 36.57 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.93 Total: 11.92 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -9.14 Total: -116.14 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -1.61 Total: -52.08 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.64 Total: 44.82 kcal Total: -71.18 -3.74 -74.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591986333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.817 kcal (2) G-P(sol) polarization free energy of solvation -71.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds