Wall clock time and date at job start Fri Apr 10 2020 18:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47611 * 2 1 4 4 N 1.46498 * 109.47290 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99540 * 273.93496 * 4 3 2 6 6 O 1.21356 * 119.99712 * 185.32649 * 5 4 3 7 7 C 1.49455 * 120.00305 * 5.33276 * 5 4 3 8 8 O 1.21350 * 119.99645 * 5.54836 * 7 5 4 9 9 N 1.34770 * 120.00090 * 185.55432 * 7 5 4 10 10 C 1.46498 * 120.00350 * 179.97438 * 9 7 5 11 11 C 1.52988 * 109.47661 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47443 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47432 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99439 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00295 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00439 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 120.00025 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47019 * 89.99650 * 17 15 13 19 19 H 1.48498 * 109.47382 * 209.99782 * 17 15 13 20 20 H 1.48507 * 109.46801 * 329.99870 * 17 15 13 21 21 C 1.46495 * 120.00464 * 93.93911 * 4 3 2 22 22 H 1.09005 * 110.28947 * 0.69837 * 21 4 3 23 23 C 1.54262 * 110.32239 * 238.57388 * 21 4 3 24 24 C 1.54377 * 105.06030 * 241.09860 * 23 21 4 25 25 N 1.48563 * 104.59222 * 23.85586 * 24 23 21 26 26 C 1.46905 * 110.99919 * 200.95828 * 25 24 23 27 27 C 1.48825 * 104.23573 * 320.49105 * 25 24 23 28 28 H 1.09006 * 109.47059 * 300.00322 * 1 2 3 29 29 H 1.09006 * 109.47134 * 59.99987 * 1 2 3 30 30 H 1.08998 * 109.47553 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47059 * 239.99678 * 2 1 3 32 32 H 1.09006 * 109.47134 * 120.00013 * 2 1 3 33 33 H 1.08996 * 109.47249 * 59.99706 * 3 2 1 34 34 H 1.09006 * 109.46882 * 300.00167 * 3 2 1 35 35 H 0.97000 * 120.00361 * 359.97438 * 9 7 5 36 36 H 1.09008 * 109.46690 * 300.00237 * 10 9 7 37 37 H 1.09004 * 109.47021 * 59.98922 * 10 9 7 38 38 H 1.09008 * 109.47453 * 300.00004 * 11 10 9 39 39 H 1.09004 * 109.47592 * 59.99506 * 11 10 9 40 40 H 1.09007 * 109.46500 * 299.99833 * 12 11 10 41 41 H 1.08995 * 109.47169 * 59.99417 * 12 11 10 42 42 H 0.96997 * 120.00267 * 180.02562 * 16 15 13 43 43 H 1.09000 * 110.32683 * 359.97438 * 23 21 4 44 44 H 1.09005 * 110.32242 * 122.10917 * 23 21 4 45 45 H 1.09000 * 110.41494 * 142.63188 * 24 23 21 46 46 H 1.08998 * 110.41282 * 264.96223 * 24 23 21 47 47 H 1.09005 * 109.47162 * 60.12769 * 26 25 24 48 48 H 1.09001 * 109.47189 * 180.12067 * 26 25 24 49 49 H 1.09001 * 109.47159 * 300.12733 * 26 25 24 50 50 H 1.09005 * 110.45073 * 280.77229 * 27 25 24 51 51 H 1.08994 * 110.49902 * 158.25516 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1794 1.3621 1.1636 6 8 5.3890 1.4592 1.1721 7 6 3.4374 1.1533 2.4441 8 8 2.2403 0.9555 2.4263 9 7 4.0979 1.1848 3.6184 10 6 3.3706 0.9807 4.8736 11 6 4.3472 1.0639 6.0483 12 6 3.5877 0.8501 7.3592 13 6 4.5495 0.9328 8.5164 14 1 5.5978 1.1187 8.3349 15 6 4.0913 0.7710 9.8066 16 7 4.9308 0.8426 10.8165 17 14 2.2782 0.4486 10.1204 18 1 2.0270 -1.0149 10.1121 19 1 1.8973 1.0087 11.4419 20 1 1.4691 1.0959 9.0566 21 6 4.2371 1.5297 -1.2665 22 1 3.5405 1.5999 -2.1020 23 6 5.1581 0.3041 -1.4385 24 6 6.5869 0.8837 -1.5154 25 7 6.4968 2.1946 -0.8221 26 6 7.5989 3.0791 -1.2235 27 6 5.1849 2.7481 -1.2549 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 5.0549 1.3426 3.6326 36 1 2.6068 1.7510 4.9803 37 1 2.8973 -0.0012 4.8638 38 1 5.1107 0.2933 5.9415 39 1 4.8208 2.0456 6.0583 40 1 2.8239 1.6205 7.4663 41 1 3.1144 -0.1317 7.3489 42 1 4.6085 0.7284 11.7242 43 1 5.0658 -0.3621 -0.5808 44 1 4.9135 -0.2271 -2.3583 45 1 7.2908 0.2293 -1.0011 46 1 6.8861 1.0209 -2.5545 47 1 7.5539 3.2508 -2.2990 48 1 7.5101 4.0309 -0.6997 49 1 8.5505 2.6121 -0.9697 50 1 5.2637 3.1780 -2.2535 51 1 4.8334 3.4965 -0.5448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592334734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:44 Heat of formation + Delta-G solvation = -49.967263 kcal Electronic energy + Delta-G solvation = -28783.648109 eV Core-core repulsion = 24911.775388 eV Total energy + Delta-G solvation = -3871.872721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07326 -39.30220 -37.61459 -36.63742 -35.34109 -33.27844 -33.23042 -31.42926 -31.35904 -28.96623 -27.59598 -26.28888 -25.93668 -24.34424 -22.65708 -21.84596 -21.26583 -21.15243 -20.52093 -19.14771 -17.69791 -16.94504 -16.66782 -16.25286 -15.95104 -15.80945 -15.42436 -14.93511 -14.81258 -14.75590 -14.24006 -14.13633 -13.84039 -13.54228 -13.41877 -13.07545 -12.72244 -12.66278 -12.55461 -12.31561 -12.14661 -11.99513 -11.91322 -11.85084 -11.72048 -11.45475 -11.41804 -11.22624 -11.09946 -10.92521 -10.87211 -10.68092 -10.11125 -9.90344 -9.74315 -9.23017 -9.13445 -8.98332 -8.82255 -8.54890 -8.43447 -6.05214 -4.04039 1.60538 2.36857 3.31426 3.34481 3.38958 3.42594 3.50413 3.81852 4.27527 4.36188 4.44788 4.54041 4.69574 4.83805 4.90159 4.94720 5.00844 5.15192 5.19885 5.21546 5.26906 5.28590 5.32217 5.47411 5.48020 5.50124 5.60935 5.61736 5.66429 5.68877 5.73711 5.84742 5.91846 5.97788 6.10441 6.11801 6.31917 6.39743 6.42949 6.63455 6.67388 6.77624 6.85178 7.01566 7.22662 7.35944 7.43041 7.76602 7.89318 8.17659 8.51640 8.99188 9.56743 11.08102 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.002682 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.873057 B =10439.235286 C =11985.747605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.108 3.892 4 N -0.589 5.589 5 C 0.493 3.507 6 O -0.463 6.463 7 C 0.495 3.505 8 O -0.522 6.522 9 N -0.693 5.693 10 C 0.114 3.886 11 C -0.115 4.115 12 C -0.010 4.010 13 C -0.522 4.522 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.145 3.855 22 H 0.098 0.902 23 C -0.131 4.131 24 C 0.040 3.960 25 N -0.478 5.478 26 C 0.013 3.987 27 C 0.026 3.974 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.038 0.962 47 H 0.021 0.979 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.048 0.952 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 1.713 -31.191 31.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.014 4.014 4 N -0.324 5.324 5 C 0.274 3.726 6 O -0.333 6.333 7 C 0.276 3.724 8 O -0.399 6.399 9 N -0.345 5.345 10 C -0.009 4.009 11 C -0.153 4.153 12 C -0.048 4.048 13 C -0.560 4.560 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.041 3.959 22 H 0.116 0.884 23 C -0.169 4.169 24 C -0.089 4.089 25 N -0.201 5.201 26 C -0.136 4.136 27 C -0.103 4.103 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.066 0.934 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.105 1.579 -30.377 30.576 hybrid contribution -0.523 -0.037 -0.572 0.776 sum -3.628 1.542 -30.949 31.199 Atomic orbital electron populations 1.21623 0.95294 1.01610 1.01691 1.21856 0.96212 0.96842 1.02102 1.22015 0.77746 0.98040 1.03597 1.47885 1.07264 1.72491 1.04780 1.20304 0.88098 0.79360 0.84830 1.90972 1.12227 1.44189 1.85954 1.20274 0.87625 0.79043 0.85454 1.90694 1.14246 1.47949 1.87025 1.46016 1.13255 1.69621 1.05648 1.21776 0.95759 1.01738 0.81584 1.21728 0.97812 1.02058 0.93685 1.19498 0.96425 0.96468 0.92395 1.21102 0.95960 1.49329 0.89613 0.90943 1.25028 0.97645 0.94642 0.96163 1.69911 1.34734 1.50495 0.99046 0.86777 0.86003 0.78840 0.77672 1.20256 1.21390 1.18895 1.21842 0.93586 0.95076 0.85398 0.88417 1.22679 0.94396 0.97404 1.02464 1.23014 0.97170 0.92477 0.96189 1.65660 1.00590 1.01904 1.51973 1.22537 0.95466 0.97951 0.97622 1.23500 0.90978 0.96834 0.99006 0.92058 0.93295 0.92876 0.93019 0.90665 0.87941 0.91442 0.75277 0.91332 0.91359 0.91904 0.91880 0.96302 0.96735 0.92695 0.90333 0.90915 0.90070 0.94427 0.96086 0.91421 0.91326 0.93421 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.13 -1.25 5.69 -26.73 -0.15 -1.40 16 3 C 0.11 1.00 4.96 -4.04 -0.02 0.98 16 4 N -0.59 -5.99 2.42 -165.04 -0.40 -6.38 16 5 C 0.49 6.32 6.73 -11.58 -0.08 6.24 16 6 O -0.46 -6.63 12.55 5.49 0.07 -6.56 16 7 C 0.50 7.02 7.65 -11.59 -0.09 6.93 16 8 O -0.52 -7.89 11.42 5.50 0.06 -7.83 16 9 N -0.69 -10.01 5.55 -60.73 -0.34 -10.34 16 10 C 0.11 1.83 5.67 -4.05 -0.02 1.81 16 11 C -0.11 -2.15 5.27 -26.74 -0.14 -2.29 16 12 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 13 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 17 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C 0.15 1.21 3.57 -66.55 -0.24 0.97 16 22 H 0.10 0.58 7.79 -51.93 -0.40 0.18 16 23 C -0.13 -1.10 6.07 -25.35 -0.15 -1.25 16 24 C 0.04 0.35 6.30 -2.18 -0.01 0.34 16 25 N -0.48 -4.99 3.33 -237.99 -0.79 -5.78 16 26 C 0.01 0.11 9.53 60.07 0.57 0.69 16 27 C 0.03 0.23 5.46 -2.04 -0.01 0.22 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.91 6.47 -51.93 -0.34 0.58 16 33 H 0.10 1.14 5.84 -51.93 -0.30 0.84 16 34 H 0.07 0.47 7.85 -51.93 -0.41 0.06 16 35 H 0.41 5.62 7.96 -40.82 -0.32 5.30 16 36 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.08 0.83 7.22 -51.93 -0.37 0.46 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.04 0.28 7.98 -51.93 -0.41 -0.13 16 47 H 0.02 0.15 7.98 -51.93 -0.41 -0.26 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.05 0.35 7.91 -51.93 -0.41 -0.06 16 51 H 0.08 0.86 7.98 -51.93 -0.41 0.45 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -31.78 397.17 -9.06 -40.84 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -9.23 Total: 1.39 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.52 Total: -1.22 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.75 Total: -49.60 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.13 Total: -14.38 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.78 -9.06 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592334734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.126 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds