Wall clock time and date at job start Fri Apr 10 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47611 * 2 1 4 4 N 1.46498 * 109.47290 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99540 * 273.93496 * 4 3 2 6 6 O 1.21356 * 119.99712 * 185.32649 * 5 4 3 7 7 C 1.49455 * 120.00305 * 5.33276 * 5 4 3 8 8 O 1.21350 * 119.99645 * 5.54836 * 7 5 4 9 9 N 1.34770 * 120.00090 * 185.55432 * 7 5 4 10 10 C 1.46498 * 120.00350 * 179.97438 * 9 7 5 11 11 C 1.52988 * 109.47661 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47443 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47432 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99439 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00295 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00439 * 179.97438 * 15 13 12 17 17 Si 1.86807 * 120.00025 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47019 * 89.99650 * 17 15 13 19 19 H 1.48498 * 109.47382 * 209.99782 * 17 15 13 20 20 H 1.48507 * 109.46801 * 329.99870 * 17 15 13 21 21 C 1.46495 * 120.00464 * 93.93911 * 4 3 2 22 22 H 1.09005 * 110.28947 * 0.69837 * 21 4 3 23 23 C 1.54262 * 110.32239 * 238.57388 * 21 4 3 24 24 C 1.54377 * 105.06030 * 241.09860 * 23 21 4 25 25 N 1.48563 * 104.59222 * 23.85586 * 24 23 21 26 26 C 1.46905 * 110.99919 * 200.95828 * 25 24 23 27 27 C 1.48825 * 104.23573 * 320.49105 * 25 24 23 28 28 H 1.09006 * 109.47059 * 300.00322 * 1 2 3 29 29 H 1.09006 * 109.47134 * 59.99987 * 1 2 3 30 30 H 1.08998 * 109.47553 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47059 * 239.99678 * 2 1 3 32 32 H 1.09006 * 109.47134 * 120.00013 * 2 1 3 33 33 H 1.08996 * 109.47249 * 59.99706 * 3 2 1 34 34 H 1.09006 * 109.46882 * 300.00167 * 3 2 1 35 35 H 0.97000 * 120.00361 * 359.97438 * 9 7 5 36 36 H 1.09008 * 109.46690 * 300.00237 * 10 9 7 37 37 H 1.09004 * 109.47021 * 59.98922 * 10 9 7 38 38 H 1.09008 * 109.47453 * 300.00004 * 11 10 9 39 39 H 1.09004 * 109.47592 * 59.99506 * 11 10 9 40 40 H 1.09007 * 109.46500 * 299.99833 * 12 11 10 41 41 H 1.08995 * 109.47169 * 59.99417 * 12 11 10 42 42 H 0.96997 * 120.00267 * 180.02562 * 16 15 13 43 43 H 1.09000 * 110.32683 * 359.97438 * 23 21 4 44 44 H 1.09005 * 110.32242 * 122.10917 * 23 21 4 45 45 H 1.09000 * 110.41494 * 142.63188 * 24 23 21 46 46 H 1.08998 * 110.41282 * 264.96223 * 24 23 21 47 47 H 1.09005 * 109.47162 * 60.12769 * 26 25 24 48 48 H 1.09001 * 109.47189 * 180.12067 * 26 25 24 49 49 H 1.09001 * 109.47159 * 300.12733 * 26 25 24 50 50 H 1.09005 * 110.45073 * 280.77229 * 27 25 24 51 51 H 1.08994 * 110.49902 * 158.25516 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1794 1.3621 1.1636 6 8 5.3890 1.4592 1.1721 7 6 3.4374 1.1533 2.4441 8 8 2.2403 0.9555 2.4263 9 7 4.0979 1.1848 3.6184 10 6 3.3706 0.9807 4.8736 11 6 4.3472 1.0639 6.0483 12 6 3.5877 0.8501 7.3592 13 6 4.5495 0.9328 8.5164 14 1 5.5978 1.1187 8.3349 15 6 4.0913 0.7710 9.8066 16 7 4.9308 0.8426 10.8165 17 14 2.2782 0.4486 10.1204 18 1 2.0270 -1.0149 10.1121 19 1 1.8973 1.0087 11.4419 20 1 1.4691 1.0959 9.0566 21 6 4.2371 1.5297 -1.2665 22 1 3.5405 1.5999 -2.1020 23 6 5.1581 0.3041 -1.4385 24 6 6.5869 0.8837 -1.5154 25 7 6.4968 2.1946 -0.8221 26 6 7.5989 3.0791 -1.2235 27 6 5.1849 2.7481 -1.2549 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 5.0549 1.3426 3.6326 36 1 2.6068 1.7510 4.9803 37 1 2.8973 -0.0012 4.8638 38 1 5.1107 0.2933 5.9415 39 1 4.8208 2.0456 6.0583 40 1 2.8239 1.6205 7.4663 41 1 3.1144 -0.1317 7.3489 42 1 4.6085 0.7284 11.7242 43 1 5.0658 -0.3621 -0.5808 44 1 4.9135 -0.2271 -2.3583 45 1 7.2908 0.2293 -1.0011 46 1 6.8861 1.0209 -2.5545 47 1 7.5539 3.2508 -2.2990 48 1 7.5101 4.0309 -0.6997 49 1 8.5505 2.6121 -0.9697 50 1 5.2637 3.1780 -2.2535 51 1 4.8334 3.4965 -0.5448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592334734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:43 Heat of formation + Delta-G solvation = -70.768188 kcal Electronic energy + Delta-G solvation = -28784.550105 eV Core-core repulsion = 24911.775388 eV Total energy + Delta-G solvation = -3872.774716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01009 -40.25409 -38.53439 -37.63316 -36.63893 -35.08980 -33.96697 -33.25388 -32.07187 -29.70345 -29.20558 -27.16016 -26.69192 -25.56689 -24.00571 -22.61366 -22.29042 -22.03007 -21.89602 -20.22088 -18.97190 -18.55303 -17.76993 -17.11425 -17.04828 -16.81965 -16.27244 -16.24508 -16.05523 -15.64268 -15.52720 -15.14784 -14.88219 -14.77604 -14.59002 -14.15815 -13.85053 -13.79670 -13.63792 -13.37941 -13.19282 -13.04101 -12.78850 -12.76267 -12.67023 -12.61524 -12.41262 -12.15999 -12.12800 -11.93897 -11.88556 -11.77369 -11.71101 -11.62764 -11.42223 -11.33690 -10.75884 -10.23070 -10.12888 -9.67891 -9.10927 -8.28749 -6.33358 0.54592 1.38127 1.39479 1.41527 1.51739 2.29724 2.37312 2.52580 3.06921 3.18310 3.40539 3.66342 3.73327 4.00404 4.04679 4.17916 4.20171 4.24380 4.30436 4.35703 4.48155 4.49476 4.53605 4.55070 4.61363 4.68219 4.79267 4.81986 4.87028 4.88730 4.90027 4.97777 5.01527 5.02190 5.04481 5.16351 5.19639 5.29470 5.38317 5.45214 5.52007 5.55080 5.64213 5.65398 6.01311 6.07942 6.20290 6.27963 6.36623 6.74978 6.84728 7.12965 7.31448 8.88021 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014734 B = 0.002682 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.873057 B =10439.235286 C =11985.747605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.108 3.892 4 N -0.579 5.579 5 C 0.494 3.506 6 O -0.483 6.483 7 C 0.493 3.507 8 O -0.530 6.530 9 N -0.694 5.694 10 C 0.129 3.871 11 C -0.104 4.104 12 C -0.009 4.009 13 C -0.533 4.533 14 H 0.033 0.967 15 C 0.003 3.997 16 N -0.953 5.953 17 Si 0.951 3.049 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.244 1.244 21 C 0.142 3.858 22 H 0.134 0.866 23 C -0.127 4.127 24 C 0.041 3.959 25 N -0.510 5.510 26 C 0.016 3.984 27 C 0.028 3.972 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.414 0.586 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.266 0.734 43 H 0.052 0.948 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.037 0.963 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 1.688 -34.316 34.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.013 4.013 4 N -0.313 5.313 5 C 0.274 3.726 6 O -0.355 6.355 7 C 0.274 3.726 8 O -0.408 6.408 9 N -0.347 5.347 10 C 0.006 3.994 11 C -0.142 4.142 12 C -0.047 4.047 13 C -0.571 4.571 14 H 0.052 0.948 15 C -0.194 4.194 16 N -0.593 5.593 17 Si 0.774 3.226 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.167 1.167 21 C 0.039 3.961 22 H 0.152 0.848 23 C -0.165 4.165 24 C -0.087 4.087 25 N -0.234 5.234 26 C -0.133 4.133 27 C -0.100 4.100 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.251 0.749 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.118 0.882 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.337 1.557 -33.551 34.008 hybrid contribution 0.262 -0.014 0.363 0.448 sum -5.075 1.543 -33.188 33.609 Atomic orbital electron populations 1.21593 0.94517 1.01791 1.01964 1.21780 0.96828 0.96673 1.01205 1.22060 0.76974 0.98033 1.04260 1.47951 1.07797 1.70927 1.04663 1.20065 0.87772 0.79659 0.85080 1.90974 1.12831 1.45583 1.86157 1.20621 0.87601 0.78526 0.85859 1.90699 1.14690 1.48159 1.87297 1.45908 1.13374 1.70019 1.05388 1.21441 0.94840 1.01821 0.81304 1.21505 0.97838 1.01879 0.92936 1.19445 0.95781 0.96985 0.92494 1.21481 0.95321 1.48649 0.91684 0.94847 1.26034 1.03069 0.94445 0.95846 1.70069 1.37367 1.52194 0.99697 0.85647 0.79617 0.79281 0.78055 1.19177 1.21109 1.16683 1.22144 0.94118 0.94699 0.85136 0.84847 1.22660 0.94143 0.97099 1.02629 1.22987 0.97261 0.91632 0.96810 1.65584 1.01593 1.02830 1.53394 1.22493 0.94929 0.97337 0.98513 1.23474 0.90364 0.96626 0.99566 0.93649 0.91104 0.92787 0.91549 0.93859 0.89996 0.88054 0.74923 0.91178 0.91334 0.92160 0.92065 0.95676 0.95871 0.92497 0.92953 0.88183 0.91768 0.92513 0.94438 0.92081 0.91760 0.91155 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.13 -2.14 5.69 30.59 0.17 -1.97 16 3 C 0.11 1.75 4.96 86.38 0.43 2.18 16 4 N -0.58 -10.74 2.42 -794.44 -1.92 -12.66 16 5 C 0.49 12.41 6.73 87.27 0.59 13.00 16 6 O -0.48 -13.85 12.55 -3.27 -0.04 -13.89 16 7 C 0.49 13.82 7.65 87.27 0.67 14.49 16 8 O -0.53 -15.82 11.42 -3.25 -0.04 -15.86 16 9 N -0.69 -19.93 5.55 -464.42 -2.58 -22.51 16 10 C 0.13 4.06 5.67 86.38 0.49 4.55 16 11 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 12 C -0.01 -0.42 4.04 29.85 0.12 -0.29 16 13 C -0.53 -30.77 9.66 25.60 0.25 -30.52 16 14 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 15 C 0.00 0.16 5.47 84.65 0.46 0.62 16 16 N -0.95 -60.29 13.96 21.44 0.30 -59.99 16 17 Si 0.95 44.32 27.47 68.60 1.88 46.21 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 20 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 21 C 0.14 1.94 3.57 45.89 0.16 2.11 16 22 H 0.13 0.92 7.79 -2.38 -0.02 0.90 16 23 C -0.13 -1.85 6.07 31.49 0.19 -1.66 16 24 C 0.04 0.67 6.30 86.45 0.54 1.22 16 25 N -0.51 -10.11 3.33 -906.88 -3.02 -13.13 16 26 C 0.02 0.26 9.53 127.69 1.22 1.48 16 27 C 0.03 0.45 5.46 86.39 0.47 0.92 16 28 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.04 1.02 6.47 -2.38 -0.02 1.01 16 33 H 0.08 1.72 5.84 -2.39 -0.01 1.70 16 34 H 0.10 0.99 7.85 -2.38 -0.02 0.97 16 35 H 0.41 11.44 7.96 -92.71 -0.74 10.70 16 36 H 0.07 2.20 8.14 -2.38 -0.02 2.19 16 37 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.02 1.12 7.20 -2.38 -0.02 1.10 16 41 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 42 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.05 1.06 7.22 -2.39 -0.02 1.04 16 44 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 0.70 7.98 -2.39 -0.02 0.68 16 47 H 0.04 0.48 7.98 -2.38 -0.02 0.46 16 48 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 0.78 7.91 -2.38 -0.02 0.77 16 51 H 0.06 1.25 7.98 -2.39 -0.02 1.23 16 Total: -1.00 -70.73 397.17 1.34 -69.39 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.11 Total: 21.42 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.64 Total: 1.02 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -7.21 Total: -108.29 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.08 Total: -29.75 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.21 kcal Total: -70.73 1.34 -69.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592334734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.377 kcal (2) G-P(sol) polarization free energy of solvation -70.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds