Wall clock time and date at job start Fri Apr 10 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47335 * 2 1 4 4 N 1.46495 * 109.47156 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00415 * 276.76310 * 4 3 2 6 6 O 1.21351 * 120.00423 * 176.29782 * 5 4 3 7 7 C 1.49449 * 119.99545 * 356.30121 * 5 4 3 8 8 O 1.21355 * 120.00313 * 5.70773 * 7 5 4 9 9 N 1.34783 * 120.00232 * 185.70965 * 7 5 4 10 10 C 1.46497 * 120.00058 * 179.97438 * 9 7 5 11 11 C 1.53007 * 109.46685 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46873 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47119 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00090 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00059 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00013 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99897 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.47050 * 90.00113 * 17 15 13 19 19 H 1.48500 * 109.46975 * 209.99959 * 17 15 13 20 20 H 1.48498 * 109.47282 * 330.00306 * 17 15 13 21 21 C 1.46503 * 120.00066 * 96.76401 * 4 3 2 22 22 H 1.09001 * 110.28620 * 357.87078 * 21 4 3 23 23 C 1.54257 * 110.32495 * 119.99997 * 21 4 3 24 24 C 1.54384 * 105.14819 * 118.94729 * 23 21 4 25 25 N 1.48715 * 104.51992 * 336.26736 * 24 23 21 26 26 C 1.46901 * 111.01673 * 158.96813 * 25 24 23 27 27 C 1.48559 * 104.28573 * 39.36365 * 25 24 23 28 28 H 1.09009 * 109.47319 * 59.99658 * 1 2 3 29 29 H 1.08997 * 109.47682 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47338 * 299.99705 * 1 2 3 31 31 H 1.09004 * 109.47338 * 240.00295 * 2 1 3 32 32 H 1.08997 * 109.47425 * 120.00806 * 2 1 3 33 33 H 1.08994 * 109.46598 * 60.00668 * 3 2 1 34 34 H 1.08999 * 109.47137 * 300.00374 * 3 2 1 35 35 H 0.96998 * 119.99201 * 359.97438 * 9 7 5 36 36 H 1.09000 * 109.46922 * 299.99905 * 10 9 7 37 37 H 1.08993 * 109.47107 * 60.00163 * 10 9 7 38 38 H 1.08994 * 109.47011 * 299.99897 * 11 10 9 39 39 H 1.08996 * 109.46745 * 60.00250 * 11 10 9 40 40 H 1.08997 * 109.47728 * 300.00340 * 12 11 10 41 41 H 1.09001 * 109.46989 * 59.99940 * 12 11 10 42 42 H 0.96997 * 120.00296 * 179.97438 * 16 15 13 43 43 H 1.09002 * 110.32451 * 237.89015 * 23 21 4 44 44 H 1.08996 * 110.32556 * 0.02562 * 23 21 4 45 45 H 1.09004 * 110.40904 * 94.97931 * 24 23 21 46 46 H 1.09008 * 110.40975 * 217.41683 * 24 23 21 47 47 H 1.09004 * 109.46782 * 304.49339 * 26 25 24 48 48 H 1.08996 * 109.47069 * 64.49045 * 26 25 24 49 49 H 1.09003 * 109.46819 * 184.49130 * 26 25 24 50 50 H 1.09002 * 110.41144 * 201.79465 * 27 25 24 51 51 H 1.08996 * 110.41478 * 79.35431 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1794 1.3048 1.1581 6 8 5.3910 1.2373 1.1507 7 6 3.4350 1.2353 2.4522 8 8 2.2220 1.1984 2.4533 9 7 4.1108 1.2137 3.6181 10 6 3.3811 1.1461 4.8866 11 6 4.3772 1.1350 6.0480 12 6 3.6152 1.0650 7.3728 13 6 4.5962 1.0547 8.5167 14 1 5.6571 1.0936 8.3186 15 6 4.1393 0.9944 9.8162 16 7 4.9955 0.9849 10.8144 17 14 2.3043 0.9264 10.1589 18 1 1.8606 -0.4903 10.1998 19 1 2.0206 1.5719 11.4658 20 1 1.5730 1.6432 9.0835 21 6 4.2369 1.5921 -1.2608 22 1 3.5407 1.6532 -2.0973 23 6 5.1312 2.8481 -1.2151 24 6 6.5727 2.3235 -1.3893 25 7 6.5115 0.9080 -0.9374 26 6 7.6309 0.1309 -1.4861 27 6 5.2124 0.4122 -1.4602 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 5.0804 1.2429 3.6172 36 1 2.7281 2.0142 4.9768 37 1 2.7817 0.2362 4.9129 38 1 5.0305 0.2672 5.9579 39 1 4.9763 2.0452 6.0214 40 1 2.9620 1.9330 7.4626 41 1 3.0157 0.1551 7.3995 42 1 4.6741 0.9429 11.7286 43 1 4.8741 3.5258 -2.0292 44 1 5.0260 3.3531 -0.2550 45 1 6.8723 2.3754 -2.4361 46 1 7.2626 2.8936 -0.7668 47 1 7.6354 0.2178 -2.5727 48 1 8.5698 0.5148 -1.0871 49 1 7.5181 -0.9164 -1.2057 50 1 4.8801 -0.4561 -0.8911 51 1 5.2979 0.1643 -2.5181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592334735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:47 Heat of formation + Delta-G solvation = -48.655195 kcal Electronic energy + Delta-G solvation = -28779.723124 eV Core-core repulsion = 24907.907298 eV Total energy + Delta-G solvation = -3871.815825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07543 -39.31027 -37.61686 -36.63291 -35.35041 -33.31811 -33.25030 -31.43296 -31.31460 -28.98195 -27.60547 -26.29055 -25.94952 -24.33495 -22.65916 -21.73711 -21.38845 -21.17409 -20.52425 -19.19135 -17.63817 -16.94766 -16.66416 -16.24197 -15.96331 -15.80121 -15.42165 -14.99793 -14.80975 -14.75146 -14.28968 -14.12923 -13.77772 -13.64405 -13.40290 -13.05688 -12.71564 -12.60133 -12.58709 -12.31323 -12.20898 -12.01001 -11.91811 -11.88273 -11.72300 -11.51615 -11.29764 -11.26570 -11.10836 -10.96960 -10.89704 -10.65953 -10.11115 -9.90516 -9.74233 -9.23070 -9.14337 -9.00366 -8.76286 -8.54932 -8.43032 -6.05290 -4.04080 1.60381 2.36477 3.31399 3.33905 3.38929 3.42574 3.50946 3.82144 4.27257 4.36154 4.44761 4.53376 4.70050 4.83608 4.89624 4.94097 4.99249 5.14134 5.18832 5.22276 5.25598 5.28520 5.31861 5.46774 5.48113 5.49695 5.60393 5.61421 5.67897 5.68868 5.73672 5.84561 5.91086 5.97544 6.05128 6.10549 6.33042 6.37294 6.42777 6.63759 6.68038 6.77489 6.85488 7.01905 7.22561 7.35858 7.42424 7.76541 7.89620 8.17123 8.51577 8.99175 9.56654 11.08041 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.002660 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.567997 B =10525.756372 C =11926.360516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.097 3.903 4 N -0.588 5.588 5 C 0.493 3.507 6 O -0.463 6.463 7 C 0.497 3.503 8 O -0.522 6.522 9 N -0.693 5.693 10 C 0.114 3.886 11 C -0.115 4.115 12 C -0.010 4.010 13 C -0.522 4.522 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.145 3.855 22 H 0.098 0.902 23 C -0.131 4.131 24 C 0.040 3.960 25 N -0.478 5.478 26 C 0.014 3.986 27 C 0.027 3.973 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.081 0.919 47 H 0.021 0.979 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 1.168 -31.167 31.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C -0.025 4.025 4 N -0.323 5.323 5 C 0.274 3.726 6 O -0.334 6.334 7 C 0.278 3.722 8 O -0.400 6.400 9 N -0.345 5.345 10 C -0.009 4.009 11 C -0.153 4.153 12 C -0.048 4.048 13 C -0.560 4.560 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.040 3.960 22 H 0.116 0.884 23 C -0.170 4.170 24 C -0.088 4.088 25 N -0.202 5.202 26 C -0.135 4.135 27 C -0.102 4.102 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.100 0.900 47 H 0.039 0.961 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.100 0.900 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.277 1.048 -30.349 30.544 hybrid contribution -0.520 -0.113 -0.596 0.799 sum -3.797 0.935 -30.945 31.191 Atomic orbital electron populations 1.21631 0.95155 1.01652 1.01856 1.21812 0.96324 0.96890 1.01846 1.22239 0.77772 0.98029 1.04449 1.47892 1.07298 1.71823 1.05294 1.20272 0.88093 0.79318 0.84928 1.90973 1.12025 1.44235 1.86134 1.20294 0.87810 0.78526 0.85600 1.90642 1.13426 1.48931 1.87038 1.46024 1.11690 1.71257 1.05515 1.21784 0.95709 1.02173 0.81221 1.21729 0.97639 1.02099 0.93811 1.19497 0.96406 0.96611 0.92274 1.21102 0.94488 1.50930 0.89494 0.90942 1.25030 0.97716 0.94504 0.96235 1.69910 1.34227 1.50928 0.99113 0.86775 0.86140 0.78622 0.77745 1.20254 1.21391 1.18896 1.21850 0.93581 0.94916 0.85606 0.88424 1.22691 0.94507 0.96877 1.02962 1.23056 0.97046 0.90822 0.97912 1.65594 1.00581 1.01197 1.52813 1.22532 0.95324 0.99161 0.96523 1.23428 0.90930 0.97975 0.97854 0.93158 0.92842 0.91965 0.92889 0.91375 0.86735 0.91428 0.75265 0.91321 0.91324 0.91885 0.91885 0.96297 0.96733 0.92693 0.90885 0.90301 0.94407 0.90010 0.96091 0.91251 0.91527 0.89955 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.91 37.15 0.37 -0.85 16 2 C -0.13 -1.22 5.75 -26.73 -0.15 -1.38 16 3 C 0.10 0.90 4.99 -4.04 -0.02 0.88 16 4 N -0.59 -6.01 2.43 -165.04 -0.40 -6.41 16 5 C 0.49 6.34 6.71 -11.58 -0.08 6.26 16 6 O -0.46 -6.65 12.56 5.50 0.07 -6.58 16 7 C 0.50 7.06 7.66 -11.58 -0.09 6.97 16 8 O -0.52 -7.93 11.83 5.49 0.06 -7.87 16 9 N -0.69 -10.00 5.55 -60.73 -0.34 -10.34 16 10 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 11 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 12 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 13 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 17 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.26 -6.22 6.54 56.52 0.37 -5.86 16 21 C 0.14 1.21 3.57 -66.55 -0.24 0.97 16 22 H 0.10 0.59 7.78 -51.93 -0.40 0.19 16 23 C -0.13 -1.09 6.07 -25.35 -0.15 -1.25 16 24 C 0.04 0.35 6.33 -2.09 -0.01 0.34 16 25 N -0.48 -5.03 3.31 -238.08 -0.79 -5.82 16 26 C 0.01 0.12 9.53 60.07 0.57 0.69 16 27 C 0.03 0.25 5.42 -2.18 -0.01 0.24 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.81 7.01 -51.93 -0.36 0.45 16 33 H 0.12 1.30 5.40 -51.93 -0.28 1.02 16 34 H 0.07 0.48 7.82 -51.93 -0.41 0.07 16 35 H 0.41 5.62 7.96 -40.82 -0.32 5.29 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.81 7.28 -51.93 -0.38 0.44 16 45 H 0.04 0.28 7.91 -51.93 -0.41 -0.13 16 46 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 47 H 0.02 0.16 7.98 -51.93 -0.41 -0.26 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 51 H 0.05 0.35 7.97 -51.93 -0.41 -0.07 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -31.79 397.75 -9.05 -40.84 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -9.24 Total: 1.47 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -0.52 Total: -1.20 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.75 Total: -49.64 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.13 Total: -14.45 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.79 -9.05 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592334735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.812 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds