Wall clock time and date at job start Fri Apr 10 2020 18:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47335 * 2 1 4 4 N 1.46495 * 109.47156 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00415 * 276.76310 * 4 3 2 6 6 O 1.21351 * 120.00423 * 176.29782 * 5 4 3 7 7 C 1.49449 * 119.99545 * 356.30121 * 5 4 3 8 8 O 1.21355 * 120.00313 * 5.70773 * 7 5 4 9 9 N 1.34783 * 120.00232 * 185.70965 * 7 5 4 10 10 C 1.46497 * 120.00058 * 179.97438 * 9 7 5 11 11 C 1.53007 * 109.46685 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46873 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47119 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00090 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00059 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00013 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99897 * 359.97438 * 15 13 12 18 18 H 1.48509 * 109.47050 * 90.00113 * 17 15 13 19 19 H 1.48500 * 109.46975 * 209.99959 * 17 15 13 20 20 H 1.48498 * 109.47282 * 330.00306 * 17 15 13 21 21 C 1.46503 * 120.00066 * 96.76401 * 4 3 2 22 22 H 1.09001 * 110.28620 * 357.87078 * 21 4 3 23 23 C 1.54257 * 110.32495 * 119.99997 * 21 4 3 24 24 C 1.54384 * 105.14819 * 118.94729 * 23 21 4 25 25 N 1.48715 * 104.51992 * 336.26736 * 24 23 21 26 26 C 1.46901 * 111.01673 * 158.96813 * 25 24 23 27 27 C 1.48559 * 104.28573 * 39.36365 * 25 24 23 28 28 H 1.09009 * 109.47319 * 59.99658 * 1 2 3 29 29 H 1.08997 * 109.47682 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47338 * 299.99705 * 1 2 3 31 31 H 1.09004 * 109.47338 * 240.00295 * 2 1 3 32 32 H 1.08997 * 109.47425 * 120.00806 * 2 1 3 33 33 H 1.08994 * 109.46598 * 60.00668 * 3 2 1 34 34 H 1.08999 * 109.47137 * 300.00374 * 3 2 1 35 35 H 0.96998 * 119.99201 * 359.97438 * 9 7 5 36 36 H 1.09000 * 109.46922 * 299.99905 * 10 9 7 37 37 H 1.08993 * 109.47107 * 60.00163 * 10 9 7 38 38 H 1.08994 * 109.47011 * 299.99897 * 11 10 9 39 39 H 1.08996 * 109.46745 * 60.00250 * 11 10 9 40 40 H 1.08997 * 109.47728 * 300.00340 * 12 11 10 41 41 H 1.09001 * 109.46989 * 59.99940 * 12 11 10 42 42 H 0.96997 * 120.00296 * 179.97438 * 16 15 13 43 43 H 1.09002 * 110.32451 * 237.89015 * 23 21 4 44 44 H 1.08996 * 110.32556 * 0.02562 * 23 21 4 45 45 H 1.09004 * 110.40904 * 94.97931 * 24 23 21 46 46 H 1.09008 * 110.40975 * 217.41683 * 24 23 21 47 47 H 1.09004 * 109.46782 * 304.49339 * 26 25 24 48 48 H 1.08996 * 109.47069 * 64.49045 * 26 25 24 49 49 H 1.09003 * 109.46819 * 184.49130 * 26 25 24 50 50 H 1.09002 * 110.41144 * 201.79465 * 27 25 24 51 51 H 1.08996 * 110.41478 * 79.35431 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1794 1.3048 1.1581 6 8 5.3910 1.2373 1.1507 7 6 3.4350 1.2353 2.4522 8 8 2.2220 1.1984 2.4533 9 7 4.1108 1.2137 3.6181 10 6 3.3811 1.1461 4.8866 11 6 4.3772 1.1350 6.0480 12 6 3.6152 1.0650 7.3728 13 6 4.5962 1.0547 8.5167 14 1 5.6571 1.0936 8.3186 15 6 4.1393 0.9944 9.8162 16 7 4.9955 0.9849 10.8144 17 14 2.3043 0.9264 10.1589 18 1 1.8606 -0.4903 10.1998 19 1 2.0206 1.5719 11.4658 20 1 1.5730 1.6432 9.0835 21 6 4.2369 1.5921 -1.2608 22 1 3.5407 1.6532 -2.0973 23 6 5.1312 2.8481 -1.2151 24 6 6.5727 2.3235 -1.3893 25 7 6.5115 0.9080 -0.9374 26 6 7.6309 0.1309 -1.4861 27 6 5.2124 0.4122 -1.4602 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 5.0804 1.2429 3.6172 36 1 2.7281 2.0142 4.9768 37 1 2.7817 0.2362 4.9129 38 1 5.0305 0.2672 5.9579 39 1 4.9763 2.0452 6.0214 40 1 2.9620 1.9330 7.4626 41 1 3.0157 0.1551 7.3995 42 1 4.6741 0.9429 11.7286 43 1 4.8741 3.5258 -2.0292 44 1 5.0260 3.3531 -0.2550 45 1 6.8723 2.3754 -2.4361 46 1 7.2626 2.8936 -0.7668 47 1 7.6354 0.2178 -2.5727 48 1 8.5698 0.5148 -1.0871 49 1 7.5181 -0.9164 -1.2057 50 1 4.8801 -0.4561 -0.8911 51 1 5.2979 0.1643 -2.5181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592334735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:46 Heat of formation + Delta-G solvation = -69.457773 kcal Electronic energy + Delta-G solvation = -28780.625191 eV Core-core repulsion = 24907.907298 eV Total energy + Delta-G solvation = -3872.717893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01600 -40.26367 -38.53924 -37.63343 -36.64419 -35.09579 -34.02033 -33.25796 -32.02838 -29.71808 -29.21700 -27.16699 -26.71258 -25.55798 -24.00463 -22.52346 -22.30417 -22.07598 -21.96907 -20.26589 -18.96663 -18.50826 -17.76729 -17.09593 -17.07140 -16.82152 -16.26573 -16.18841 -16.14341 -15.61798 -15.58442 -15.16723 -14.82315 -14.77477 -14.69692 -14.15573 -13.86153 -13.78872 -13.62049 -13.30689 -13.24286 -13.04083 -12.88867 -12.75813 -12.67993 -12.62136 -12.42074 -12.23057 -12.00232 -11.97538 -11.88315 -11.78980 -11.73638 -11.61628 -11.43819 -11.33579 -10.75812 -10.22237 -10.14514 -9.64642 -9.10832 -8.28705 -6.33271 0.54076 1.38230 1.39464 1.40910 1.51843 2.28995 2.37412 2.52839 3.06983 3.18012 3.39630 3.66099 3.73145 4.00549 4.04407 4.17911 4.19459 4.22684 4.30960 4.33789 4.46508 4.49052 4.52827 4.54806 4.59904 4.67675 4.79109 4.80751 4.87027 4.88677 4.90560 4.98528 5.01451 5.01497 5.03991 5.16796 5.18247 5.30337 5.34160 5.45103 5.51630 5.55158 5.62495 5.65503 6.01348 6.07772 6.19954 6.28038 6.36137 6.75087 6.84855 7.12405 7.31483 8.88079 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.002660 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.567997 B =10525.756372 C =11926.360516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.098 3.902 4 N -0.578 5.578 5 C 0.493 3.507 6 O -0.483 6.483 7 C 0.494 3.506 8 O -0.532 6.532 9 N -0.694 5.694 10 C 0.129 3.871 11 C -0.104 4.104 12 C -0.009 4.009 13 C -0.533 4.533 14 H 0.033 0.967 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.951 3.049 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.243 1.243 21 C 0.141 3.859 22 H 0.134 0.866 23 C -0.127 4.127 24 C 0.041 3.959 25 N -0.510 5.510 26 C 0.016 3.984 27 C 0.030 3.970 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.414 0.586 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.266 0.734 43 H 0.101 0.899 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.037 0.963 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.413 1.527 -34.237 34.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.024 4.024 4 N -0.312 5.312 5 C 0.274 3.726 6 O -0.356 6.356 7 C 0.276 3.724 8 O -0.410 6.410 9 N -0.346 5.346 10 C 0.006 3.994 11 C -0.142 4.142 12 C -0.047 4.047 13 C -0.571 4.571 14 H 0.052 0.948 15 C -0.194 4.194 16 N -0.593 5.593 17 Si 0.774 3.226 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.167 1.167 21 C 0.038 3.962 22 H 0.151 0.849 23 C -0.166 4.166 24 C -0.087 4.087 25 N -0.234 5.234 26 C -0.132 4.132 27 C -0.099 4.099 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.251 0.749 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.538 1.410 -33.468 33.953 hybrid contribution 0.276 -0.229 0.320 0.481 sum -5.262 1.181 -33.148 33.584 Atomic orbital electron populations 1.21601 0.94307 1.01878 1.02143 1.21748 0.97004 0.96698 1.00927 1.22263 0.77006 0.98028 1.05089 1.47958 1.07831 1.70272 1.05171 1.20038 0.87770 0.79642 0.85159 1.90974 1.12629 1.45636 1.86328 1.20645 0.87792 0.77972 0.86031 1.90651 1.13872 1.49157 1.87340 1.45918 1.11816 1.71655 1.05235 1.21452 0.94740 1.02271 0.80985 1.21506 0.97703 1.01969 0.92982 1.19444 0.95718 0.97076 0.92471 1.21481 0.93871 1.50274 0.91515 0.94846 1.26037 1.03277 0.94129 0.95959 1.70068 1.36893 1.52621 0.99743 0.85646 0.79541 0.79302 0.78104 1.19191 1.21111 1.16664 1.22154 0.94101 0.94555 0.85359 0.84874 1.22679 0.94121 0.97069 1.02742 1.23038 0.97256 0.89861 0.98560 1.65516 1.01516 1.02189 1.54228 1.22489 0.94750 0.98568 0.97435 1.23389 0.90458 0.97412 0.98617 0.90986 0.92703 0.93499 0.91535 0.94518 0.88807 0.88039 0.74901 0.91123 0.91320 0.92173 0.92029 0.95646 0.95884 0.92498 0.88036 0.92709 0.92515 0.91607 0.94445 0.91756 0.92141 0.92077 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.13 -2.13 5.75 30.59 0.18 -1.96 16 3 C 0.10 1.59 4.99 86.38 0.43 2.02 16 4 N -0.58 -10.79 2.43 -794.43 -1.93 -12.72 16 5 C 0.49 12.45 6.71 87.27 0.59 13.04 16 6 O -0.48 -13.90 12.56 -3.25 -0.04 -13.94 16 7 C 0.49 13.90 7.66 87.27 0.67 14.57 16 8 O -0.53 -15.91 11.83 -3.26 -0.04 -15.95 16 9 N -0.69 -19.92 5.55 -464.40 -2.58 -22.50 16 10 C 0.13 4.04 5.67 86.38 0.49 4.53 16 11 C -0.10 -3.87 5.27 30.60 0.16 -3.71 16 12 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 13 C -0.53 -30.75 9.66 25.60 0.25 -30.51 16 14 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 15 C 0.00 0.15 5.47 84.66 0.46 0.62 16 16 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 17 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.24 -10.43 6.54 99.48 0.65 -9.77 16 21 C 0.14 1.95 3.57 45.89 0.16 2.11 16 22 H 0.13 0.94 7.78 -2.39 -0.02 0.92 16 23 C -0.13 -1.82 6.07 31.49 0.19 -1.63 16 24 C 0.04 0.66 6.33 86.42 0.55 1.21 16 25 N -0.51 -10.22 3.31 -907.15 -3.00 -13.22 16 26 C 0.02 0.27 9.53 127.69 1.22 1.49 16 27 C 0.03 0.49 5.42 86.45 0.47 0.96 16 28 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 0.86 7.01 -2.39 -0.02 0.84 16 33 H 0.09 2.00 5.40 -2.40 -0.01 1.98 16 34 H 0.10 1.00 7.82 -2.39 -0.02 0.98 16 35 H 0.41 11.42 7.96 -92.71 -0.74 10.69 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 41 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 42 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 43 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.05 1.07 7.28 -2.39 -0.02 1.05 16 45 H 0.06 0.70 7.91 -2.38 -0.02 0.68 16 46 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.04 0.48 7.98 -2.38 -0.02 0.46 16 48 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 50 H 0.06 1.25 7.96 -2.39 -0.02 1.23 16 51 H 0.07 0.80 7.97 -2.39 -0.02 0.78 16 Total: -1.00 -70.73 397.75 1.35 -69.38 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.10 Total: 21.66 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.65 Total: 1.08 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -7.21 Total: -108.41 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.08 Total: -29.89 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -70.73 1.35 -69.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592334735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.080 kcal (2) G-P(sol) polarization free energy of solvation -70.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds