Wall clock time and date at job start Fri Apr 10 2020 18:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 C 1.50698 * 109.47750 * 239.99703 * 2 1 3 5 5 H 1.08001 * 120.00382 * 240.00440 * 4 2 1 6 6 C 1.37881 * 119.99447 * 59.99849 * 4 2 1 7 7 N 1.31508 * 120.00450 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99665 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47111 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47448 * 120.00372 * 8 6 4 11 11 H 1.48510 * 109.46908 * 240.00368 * 8 6 4 12 12 C 1.53002 * 109.46956 * 119.99455 * 2 1 3 13 13 N 1.46493 * 109.47502 * 300.00338 * 12 2 1 14 14 C 1.34774 * 120.00059 * 179.97438 * 13 12 2 15 15 O 1.21351 * 120.00436 * 0.02562 * 14 13 12 16 16 C 1.49457 * 120.00066 * 179.97438 * 14 13 12 17 17 O 1.21351 * 119.99498 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00066 * 180.02562 * 16 14 13 19 19 C 1.46498 * 119.99805 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47248 * 180.02562 * 19 18 16 21 21 C 1.52993 * 109.47398 * 179.97438 * 20 19 18 22 22 C 1.53120 * 109.52343 * 184.99571 * 21 20 19 23 23 C 1.53042 * 109.27821 * 182.43872 * 22 21 20 24 24 N 1.46848 * 109.52160 * 59.18425 * 23 22 21 25 25 C 1.46847 * 111.19556 * 298.25623 * 24 23 22 26 26 C 1.53034 * 109.52616 * 61.74332 * 25 24 23 27 27 H 1.09000 * 109.47221 * 300.00302 * 1 2 3 28 28 H 1.09008 * 109.46901 * 60.00343 * 1 2 3 29 29 H 1.08998 * 109.47272 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47209 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47283 * 299.99414 * 3 2 1 32 32 H 1.09000 * 109.47354 * 59.99779 * 3 2 1 33 33 H 0.96997 * 120.00130 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47427 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.46843 * 60.00732 * 12 2 1 36 36 H 0.96996 * 120.00000 * 359.97438 * 13 12 2 37 37 H 0.96996 * 119.99941 * 0.02562 * 18 16 14 38 38 H 1.08993 * 109.47437 * 59.99757 * 19 18 16 39 39 H 1.08998 * 109.47055 * 299.99666 * 19 18 16 40 40 H 1.09003 * 109.47427 * 59.99269 * 20 19 18 41 41 H 1.09008 * 109.46614 * 299.99668 * 20 19 18 42 42 H 1.08996 * 109.57542 * 305.15898 * 21 20 19 43 43 H 1.08997 * 109.49895 * 62.50324 * 22 21 20 44 44 H 1.08998 * 109.50437 * 302.38327 * 22 21 20 45 45 H 1.08995 * 109.46577 * 299.16647 * 23 22 21 46 46 H 1.08994 * 109.45929 * 179.19867 * 23 22 21 47 47 H 1.00901 * 111.00066 * 62.35005 * 24 23 22 48 48 H 1.09000 * 109.46087 * 181.75730 * 25 24 23 49 49 H 1.09004 * 109.46240 * 301.72671 * 25 24 23 50 50 H 1.08998 * 109.50577 * 180.88107 * 26 25 24 51 51 H 1.09000 * 109.50061 * 60.76065 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 3.1468 -2.2870 -3.6036 10 1 1.1665 -1.5867 -4.8160 11 1 3.1469 -0.1873 -4.8163 12 6 2.0399 -0.7211 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6695 15 8 2.5744 -1.4779 3.7810 16 6 1.3790 0.2136 4.8898 17 8 0.6817 1.2005 4.7784 18 7 1.7046 -0.2468 6.1139 19 6 1.2162 0.4439 7.3100 20 6 1.7266 -0.2769 8.5594 21 6 1.2171 0.4447 9.8085 22 6 1.8274 -0.1995 11.0563 23 6 1.2674 0.4866 12.3045 24 7 -0.1945 0.3489 12.3259 25 6 -0.8063 1.0013 11.1612 26 6 -0.3082 0.3307 9.8790 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 0.7096 1.1617 -3.4844 34 1 3.1300 -0.7216 1.2492 35 1 1.6767 -1.7488 1.2493 36 1 0.9942 0.7583 2.3564 37 1 2.2622 -1.0354 6.2030 38 1 0.1262 0.4439 7.3100 39 1 1.5795 1.4715 7.3100 40 1 2.8167 -0.2766 8.5592 41 1 1.3636 -1.3048 8.5596 42 1 1.5021 1.4958 9.7648 43 1 2.9110 -0.0837 11.0327 44 1 1.5746 -1.2595 11.0793 45 1 1.5324 1.5437 12.2877 46 1 1.6892 0.0207 13.1950 47 1 -0.4655 -0.6215 12.3807 48 1 -1.8907 0.9092 11.2215 49 1 -0.5315 2.0560 11.1498 50 1 -0.7504 0.8252 9.0142 51 1 -0.5947 -0.7210 9.8835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593769048.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:50 Heat of formation + Delta-G solvation = -97.471230 kcal Electronic energy + Delta-G solvation = -27534.769498 eV Core-core repulsion = 23660.836850 eV Total energy + Delta-G solvation = -3873.932647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45552 -39.55849 -38.36325 -36.50870 -35.87945 -33.66672 -33.10746 -31.33863 -30.90323 -29.24471 -26.42615 -25.73508 -25.37488 -24.70985 -23.44102 -22.79925 -21.79243 -20.74006 -20.06043 -18.99935 -18.20298 -16.85107 -16.49507 -16.05169 -15.86537 -15.39194 -15.15079 -15.12354 -14.90542 -14.75563 -14.57782 -14.42315 -13.87234 -13.58644 -13.38554 -12.94831 -12.78352 -12.69064 -12.51814 -12.23794 -12.17051 -11.77198 -11.69384 -11.59831 -11.43555 -11.41514 -11.19717 -10.98829 -10.90610 -10.68466 -10.68202 -10.41547 -10.21315 -9.66758 -9.56295 -9.34810 -9.24711 -8.82801 -8.80489 -8.61969 -8.38790 -6.03935 -4.14655 1.63923 2.55340 3.25951 3.34698 3.38706 3.45822 3.81776 3.91737 4.15354 4.19655 4.37815 4.45389 4.62359 4.68994 4.78729 4.83655 4.92861 4.95833 5.05497 5.17003 5.22779 5.32952 5.37968 5.42796 5.46430 5.57589 5.59954 5.62646 5.75819 5.91682 6.09761 6.12334 6.21908 6.45589 6.55076 6.61430 6.80968 6.83849 6.90301 6.92667 6.98972 7.08095 7.32002 7.53789 7.65487 7.70181 7.95345 7.98763 8.11432 8.30852 8.39762 8.85793 9.51300 10.97518 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.040783 B = 0.001786 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.387796 B =15670.558797 C =16002.865705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.495 3.505 15 O -0.536 6.536 16 C 0.507 3.493 17 O -0.521 6.521 18 N -0.707 5.707 19 C 0.117 3.883 20 C -0.127 4.127 21 C -0.083 4.083 22 C -0.153 4.153 23 C 0.056 3.944 24 N -0.688 5.688 25 C 0.055 3.945 26 C -0.158 4.158 27 H 0.008 0.992 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.008 0.992 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.411 0.589 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.340 0.660 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 -0.343 26.727 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.006 3.994 13 N -0.331 5.331 14 C 0.275 3.725 15 O -0.415 6.415 16 C 0.288 3.712 17 O -0.396 6.396 18 N -0.361 5.361 19 C -0.007 4.007 20 C -0.165 4.165 21 C -0.102 4.102 22 C -0.192 4.192 23 C -0.074 4.074 24 N -0.316 5.316 25 C -0.074 4.074 26 C -0.197 4.197 27 H 0.027 0.973 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.248 0.752 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.157 0.843 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.092 0.908 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.929 0.349 26.975 26.993 hybrid contribution 0.602 -1.110 -1.659 2.085 sum -0.327 -0.761 25.316 25.329 Atomic orbital electron populations 1.21853 0.97566 0.99285 1.00398 1.18398 0.93010 0.92900 0.90300 1.21853 0.98611 0.98235 1.00398 1.20982 1.31604 1.12155 0.89738 0.92293 1.24889 0.94839 0.94925 0.98898 1.69813 1.36548 1.22674 1.23201 0.86501 0.78624 0.79714 0.82942 1.19765 1.21052 1.21055 1.21945 0.98553 0.96037 0.82857 1.46224 1.50395 1.31355 1.05165 1.19970 0.82396 0.85227 0.84951 1.90721 1.37977 1.26007 1.86789 1.20494 0.81019 0.84694 0.85023 1.90755 1.36544 1.25405 1.86875 1.45758 1.53142 1.32330 1.04900 1.21501 0.99808 0.96540 0.82811 1.21862 1.01540 1.00020 0.93113 1.21098 0.95225 1.00229 0.93627 1.22315 1.01073 1.00215 0.95581 1.22031 0.87579 1.01163 0.96633 1.60650 1.08570 1.20724 1.41697 1.22040 0.99148 0.98863 0.87387 1.22414 0.95592 1.01696 1.00004 0.97272 0.89429 0.95346 0.95349 0.89422 0.97281 0.92985 0.91993 0.91999 0.75177 0.75197 0.90891 0.91096 0.90857 0.91024 0.90579 0.91195 0.91819 0.90863 0.90706 0.84252 0.90614 0.90818 0.90789 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 2 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.38 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.54 9.35 55.43 0.52 -23.02 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 13 N -0.68 -12.68 4.95 -60.73 -0.30 -12.98 16 14 C 0.50 8.70 7.89 -11.58 -0.09 8.61 16 15 O -0.54 -10.25 16.48 5.50 0.09 -10.16 16 16 C 0.51 7.76 7.89 -11.58 -0.09 7.67 16 17 O -0.52 -9.02 16.48 5.50 0.09 -8.93 16 18 N -0.71 -8.13 5.55 -60.73 -0.34 -8.46 16 19 C 0.12 1.05 5.44 -4.04 -0.02 1.03 16 20 C -0.13 -0.80 4.80 -26.73 -0.13 -0.93 16 21 C -0.08 -0.46 2.25 -90.50 -0.20 -0.67 16 22 C -0.15 -0.75 5.36 -26.65 -0.14 -0.90 16 23 C 0.06 0.29 6.55 -3.83 -0.03 0.27 16 24 N -0.69 -4.09 6.87 -113.82 -0.78 -4.87 16 25 C 0.06 0.32 6.55 -3.84 -0.03 0.29 16 26 C -0.16 -0.90 5.06 -26.65 -0.13 -1.04 16 27 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 28 H 0.09 2.21 6.07 -51.92 -0.32 1.89 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 32 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 33 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.41 7.56 5.63 -40.82 -0.23 7.33 16 37 H 0.41 4.25 7.94 -40.82 -0.32 3.92 16 38 H 0.07 0.69 6.64 -51.93 -0.34 0.34 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.34 1.72 8.86 -39.29 -0.35 1.37 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.47 6.71 -51.93 -0.35 0.12 16 51 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -28.61 396.48 -9.32 -37.93 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.82 Total: 8.05 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.73 Total: 0.93 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.90 Total: -49.33 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.18 Total: -19.09 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.61 -9.32 -37.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593769048.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.546 kcal (2) G-P(sol) polarization free energy of solvation -28.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds