Wall clock time and date at job start Fri Apr 10 2020 18:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 C 1.50698 * 109.47750 * 239.99703 * 2 1 3 5 5 H 1.08001 * 120.00382 * 240.00440 * 4 2 1 6 6 C 1.37881 * 119.99447 * 59.99849 * 4 2 1 7 7 N 1.31508 * 120.00450 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99665 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47111 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47448 * 120.00372 * 8 6 4 11 11 H 1.48510 * 109.46908 * 240.00368 * 8 6 4 12 12 C 1.53002 * 109.46956 * 119.99455 * 2 1 3 13 13 N 1.46493 * 109.47502 * 300.00338 * 12 2 1 14 14 C 1.34774 * 120.00059 * 179.97438 * 13 12 2 15 15 O 1.21351 * 120.00436 * 0.02562 * 14 13 12 16 16 C 1.49457 * 120.00066 * 179.97438 * 14 13 12 17 17 O 1.21351 * 119.99498 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00066 * 180.02562 * 16 14 13 19 19 C 1.46498 * 119.99805 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47248 * 180.02562 * 19 18 16 21 21 C 1.52993 * 109.47398 * 179.97438 * 20 19 18 22 22 C 1.53120 * 109.52343 * 184.99571 * 21 20 19 23 23 C 1.53042 * 109.27821 * 182.43872 * 22 21 20 24 24 N 1.46848 * 109.52160 * 59.18425 * 23 22 21 25 25 C 1.46847 * 111.19556 * 298.25623 * 24 23 22 26 26 C 1.53034 * 109.52616 * 61.74332 * 25 24 23 27 27 H 1.09000 * 109.47221 * 300.00302 * 1 2 3 28 28 H 1.09008 * 109.46901 * 60.00343 * 1 2 3 29 29 H 1.08998 * 109.47272 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47209 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47283 * 299.99414 * 3 2 1 32 32 H 1.09000 * 109.47354 * 59.99779 * 3 2 1 33 33 H 0.96997 * 120.00130 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47427 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.46843 * 60.00732 * 12 2 1 36 36 H 0.96996 * 120.00000 * 359.97438 * 13 12 2 37 37 H 0.96996 * 119.99941 * 0.02562 * 18 16 14 38 38 H 1.08993 * 109.47437 * 59.99757 * 19 18 16 39 39 H 1.08998 * 109.47055 * 299.99666 * 19 18 16 40 40 H 1.09003 * 109.47427 * 59.99269 * 20 19 18 41 41 H 1.09008 * 109.46614 * 299.99668 * 20 19 18 42 42 H 1.08996 * 109.57542 * 305.15898 * 21 20 19 43 43 H 1.08997 * 109.49895 * 62.50324 * 22 21 20 44 44 H 1.08998 * 109.50437 * 302.38327 * 22 21 20 45 45 H 1.08995 * 109.46577 * 299.16647 * 23 22 21 46 46 H 1.08994 * 109.45929 * 179.19867 * 23 22 21 47 47 H 1.00901 * 111.00066 * 62.35005 * 24 23 22 48 48 H 1.09000 * 109.46087 * 181.75730 * 25 24 23 49 49 H 1.09004 * 109.46240 * 301.72671 * 25 24 23 50 50 H 1.08998 * 109.50577 * 180.88107 * 26 25 24 51 51 H 1.09000 * 109.50061 * 60.76065 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 3.1468 -2.2870 -3.6036 10 1 1.1665 -1.5867 -4.8160 11 1 3.1469 -0.1873 -4.8163 12 6 2.0399 -0.7211 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6695 15 8 2.5744 -1.4779 3.7810 16 6 1.3790 0.2136 4.8898 17 8 0.6817 1.2005 4.7784 18 7 1.7046 -0.2468 6.1139 19 6 1.2162 0.4439 7.3100 20 6 1.7266 -0.2769 8.5594 21 6 1.2171 0.4447 9.8085 22 6 1.8274 -0.1995 11.0563 23 6 1.2674 0.4866 12.3045 24 7 -0.1945 0.3489 12.3259 25 6 -0.8063 1.0013 11.1612 26 6 -0.3082 0.3307 9.8790 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 0.7096 1.1617 -3.4844 34 1 3.1300 -0.7216 1.2492 35 1 1.6767 -1.7488 1.2493 36 1 0.9942 0.7583 2.3564 37 1 2.2622 -1.0354 6.2030 38 1 0.1262 0.4439 7.3100 39 1 1.5795 1.4715 7.3100 40 1 2.8167 -0.2766 8.5592 41 1 1.3636 -1.3048 8.5596 42 1 1.5021 1.4958 9.7648 43 1 2.9110 -0.0837 11.0327 44 1 1.5746 -1.2595 11.0793 45 1 1.5324 1.5437 12.2877 46 1 1.6892 0.0207 13.1950 47 1 -0.4655 -0.6215 12.3807 48 1 -1.8907 0.9092 11.2215 49 1 -0.5315 2.0560 11.1498 50 1 -0.7504 0.8252 9.0142 51 1 -0.5947 -0.7210 9.8835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593769048.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:49 Heat of formation + Delta-G solvation = -117.311120 kcal Electronic energy + Delta-G solvation = -27535.629820 eV Core-core repulsion = 23660.836850 eV Total energy + Delta-G solvation = -3874.792969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73434 -40.16317 -39.62666 -38.20741 -36.78399 -35.10484 -34.08031 -32.75405 -31.76472 -29.97456 -27.90840 -27.59813 -27.22507 -25.72507 -24.17089 -23.62624 -22.43734 -21.57272 -21.00300 -20.70372 -19.59334 -18.05870 -17.72837 -17.25781 -17.03334 -16.71071 -16.48483 -16.09253 -15.98098 -15.55664 -15.35732 -15.21986 -15.01089 -14.80654 -14.74224 -14.32088 -14.06539 -14.00568 -13.23987 -13.21071 -13.14835 -13.07392 -12.83339 -12.74698 -12.71888 -12.56551 -12.29118 -12.25871 -12.13095 -12.10893 -12.09463 -11.51927 -11.43482 -11.31247 -11.14489 -10.77881 -10.64640 -10.42326 -10.33778 -10.13484 -9.26426 -8.02101 -6.18498 0.32747 1.34153 1.42791 1.47322 1.56395 2.12759 2.44909 2.70325 3.21830 3.41271 3.46585 3.62832 3.73174 3.96502 4.11724 4.20940 4.27839 4.33279 4.46019 4.47275 4.50394 4.54775 4.61206 4.66760 4.81473 4.87359 4.91330 4.98523 5.02851 5.03502 5.04029 5.04731 5.13908 5.14155 5.16052 5.20282 5.22185 5.25961 5.46742 5.47041 5.63711 5.67276 5.92851 6.10193 6.12817 6.18010 6.37533 6.40676 6.51394 6.72290 6.85883 6.94858 7.49506 8.97370 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.040783 B = 0.001786 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.387796 B =15670.558797 C =16002.865705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.048 3.952 3 C -0.123 4.123 4 C -0.524 4.524 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.497 3.503 15 O -0.551 6.551 16 C 0.512 3.488 17 O -0.543 6.543 18 N -0.688 5.688 19 C 0.115 3.885 20 C -0.117 4.117 21 C -0.080 4.080 22 C -0.146 4.146 23 C 0.056 3.944 24 N -0.697 5.697 25 C 0.057 3.943 26 C -0.154 4.154 27 H 0.029 0.971 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.260 0.740 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.413 0.587 37 H 0.420 0.580 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.345 0.655 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -0.845 28.275 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.047 3.953 3 C -0.181 4.181 4 C -0.562 4.562 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.020 3.980 13 N -0.333 5.333 14 C 0.278 3.722 15 O -0.431 6.431 16 C 0.292 3.708 17 O -0.421 6.421 18 N -0.341 5.341 19 C -0.007 4.007 20 C -0.155 4.155 21 C -0.099 4.099 22 C -0.186 4.186 23 C -0.074 4.074 24 N -0.326 5.326 25 C -0.073 4.073 26 C -0.193 4.193 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.251 0.749 37 H 0.257 0.743 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.163 0.837 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.565 -0.171 28.568 28.574 hybrid contribution 0.493 -0.960 -2.052 2.318 sum -0.072 -1.131 26.516 26.540 Atomic orbital electron populations 1.21700 0.97304 0.98909 1.00195 1.18409 0.93209 0.93066 0.90577 1.21699 0.98223 0.97989 1.00193 1.21258 1.31678 1.12220 0.91093 0.93016 1.25506 0.95151 0.95599 1.01183 1.69928 1.37064 1.23399 1.23575 0.85650 0.78037 0.78717 0.80041 1.19627 1.20916 1.20927 1.21550 0.97943 0.95495 0.82982 1.46078 1.50761 1.31431 1.05066 1.20360 0.81685 0.84894 0.85309 1.90711 1.38543 1.26702 1.87101 1.20019 0.81166 0.84396 0.85248 1.90754 1.37881 1.26353 1.87082 1.45772 1.51883 1.32069 1.04377 1.21699 0.99808 0.96615 0.82625 1.21804 1.01951 0.99960 0.91806 1.21069 0.95112 1.00061 0.93646 1.22253 1.01287 1.00148 0.94865 1.22040 0.87230 1.00989 0.97123 1.60650 1.09058 1.21162 1.41739 1.22008 0.99288 0.98553 0.87455 1.22368 0.95673 1.01627 0.99659 0.95192 0.91798 0.95737 0.95743 0.91790 0.95204 0.93056 0.92692 0.92694 0.74919 0.74284 0.91019 0.91288 0.90057 0.90410 0.90895 0.90639 0.91564 0.91376 0.90011 0.83698 0.90460 0.91382 0.91451 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.08 71.98 0.58 -5.02 16 2 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -5.61 8.08 71.98 0.58 -5.02 16 4 C -0.52 -27.19 8.01 25.60 0.21 -26.99 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 6 C 0.03 1.32 5.15 84.66 0.44 1.76 16 7 N -0.90 -48.24 9.35 21.45 0.20 -48.04 16 8 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.14 5.93 4.50 86.38 0.39 6.32 16 13 N -0.68 -24.77 4.95 -464.41 -2.30 -27.07 16 14 C 0.50 16.87 7.89 87.27 0.69 17.56 16 15 O -0.55 -20.39 16.48 -3.25 -0.05 -20.44 16 16 C 0.51 14.91 7.89 87.27 0.69 15.59 16 17 O -0.54 -18.13 16.48 -3.25 -0.05 -18.18 16 18 N -0.69 -14.48 5.55 -464.41 -2.58 -17.05 16 19 C 0.11 1.85 5.44 86.38 0.47 2.32 16 20 C -0.12 -1.20 4.80 30.59 0.15 -1.05 16 21 C -0.08 -0.74 2.25 -10.71 -0.02 -0.77 16 22 C -0.15 -1.14 5.36 30.65 0.16 -0.98 16 23 C 0.06 0.49 6.55 86.33 0.57 1.06 16 24 N -0.70 -7.34 6.87 -514.01 -3.53 -10.87 16 25 C 0.06 0.59 6.55 86.32 0.57 1.16 16 26 C -0.15 -1.54 5.06 30.65 0.16 -1.39 16 27 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 28 H 0.06 3.23 6.07 -2.38 -0.01 3.21 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 32 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 33 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 34 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.41 14.70 5.63 -92.71 -0.52 14.18 16 37 H 0.42 7.71 7.94 -92.71 -0.74 6.97 16 38 H 0.07 1.23 6.64 -2.39 -0.02 1.21 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.35 2.98 8.86 -89.69 -0.79 2.19 16 48 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 50 H 0.07 0.77 6.71 -2.39 -0.02 0.75 16 51 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -59.71 396.48 -1.81 -61.52 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -1.11 Total: 29.17 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.59 Total: 6.74 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -8.21 Total: -103.03 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.11 Total: -38.62 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -59.71 -1.81 -61.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593769048.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.787 kcal (2) G-P(sol) polarization free energy of solvation -59.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds